Wall clock time and date at job start Tue Mar 31 2020 22:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99962 * 2 1 4 4 C 1.53000 * 109.47054 * 239.99970 * 3 2 1 5 5 O 1.42901 * 109.47617 * 359.97438 * 3 2 1 6 6 C 1.52993 * 109.47257 * 120.00174 * 3 2 1 7 7 C 1.50700 * 109.47416 * 179.97438 * 6 3 2 8 8 O 1.21278 * 120.00269 * 0.02562 * 7 6 3 9 9 N 1.34780 * 120.00068 * 179.97438 * 7 6 3 10 10 C 1.46497 * 119.99836 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47663 * 325.00220 * 10 9 7 12 12 C 1.53001 * 109.47085 * 85.00200 * 10 9 7 13 13 C 1.52999 * 109.47234 * 204.99781 * 10 9 7 14 14 C 1.53936 * 113.73633 * 161.73043 * 13 10 9 15 15 N 1.47962 * 86.18397 * 221.92587 * 14 13 10 16 16 C 1.46900 * 111.00213 * 137.58233 * 15 14 13 17 17 C 1.50694 * 109.46940 * 90.63989 * 16 15 14 18 18 O 1.21292 * 120.00119 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99775 * 179.97438 * 17 16 15 20 20 C 1.37090 * 119.99988 * 179.97438 * 19 17 16 21 21 H 1.08006 * 120.00155 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00171 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99831 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00075 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47078 * 89.99985 * 24 22 20 26 26 H 1.48499 * 109.46975 * 209.99593 * 24 22 20 27 27 H 1.48496 * 109.47220 * 329.99788 * 24 22 20 28 28 C 1.47967 * 90.76206 * 24.68651 * 15 14 13 29 29 H 1.07995 * 120.00091 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99902 * 0.02562 * 1 2 3 31 31 H 1.07998 * 120.00263 * 180.02562 * 2 1 3 32 32 H 1.09009 * 109.47193 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47354 * 300.00228 * 4 3 2 34 34 H 1.09007 * 109.47385 * 60.00497 * 4 3 2 35 35 H 0.96699 * 113.99526 * 59.99441 * 5 3 2 36 36 H 1.09001 * 109.46999 * 299.99800 * 6 3 2 37 37 H 1.09000 * 109.47422 * 59.99761 * 6 3 2 38 38 H 0.97003 * 120.00271 * 0.02562 * 9 7 6 39 39 H 1.09003 * 109.47220 * 180.02562 * 12 10 9 40 40 H 1.08999 * 109.47369 * 300.04827 * 12 10 9 41 41 H 1.09002 * 109.47575 * 60.04949 * 12 10 9 42 42 H 1.09001 * 112.94318 * 293.43778 * 13 10 9 43 43 H 1.09003 * 113.75742 * 336.24220 * 14 13 10 44 44 H 1.09002 * 113.76038 * 107.60529 * 14 13 10 45 45 H 1.08998 * 109.46933 * 210.64247 * 16 15 14 46 46 H 1.08997 * 109.46867 * 330.63843 * 16 15 14 47 47 H 0.97004 * 120.00034 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00106 * 179.97438 * 23 22 20 49 49 H 1.08998 * 113.76038 * 220.99530 * 28 15 14 50 50 H 1.09000 * 113.85331 * 89.64273 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2492 5 8 1.1350 2.3913 -0.0006 6 6 2.9431 1.3861 1.2492 7 6 3.6971 2.6910 1.2489 8 8 3.5455 3.4788 0.3394 9 7 4.5392 2.9829 2.2599 10 6 5.2717 4.2516 2.2599 11 1 5.5312 4.5214 1.2362 12 6 4.3944 5.3471 2.8691 13 6 6.5498 4.1027 3.0877 14 6 7.6014 5.1908 2.8052 15 7 8.5993 4.0994 2.8532 16 6 9.5889 4.2432 1.7770 17 6 10.7520 5.0644 2.2707 18 8 10.7564 5.4878 3.4073 19 7 11.7879 5.3274 1.4495 20 6 12.8458 6.0749 1.8984 21 1 12.8494 6.4527 2.9102 22 6 13.9135 6.3466 1.0516 23 7 13.9094 5.8866 -0.1793 24 14 15.3553 7.3645 1.6635 25 1 16.3778 6.4669 2.2586 26 1 15.9527 8.1101 0.5267 27 1 14.8817 8.3257 2.6916 28 6 7.5621 3.1083 2.4909 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 3.4878 2.3304 -1.2495 33 1 3.6514 0.5576 -1.2493 34 1 2.3165 1.3285 -2.1393 35 1 0.5434 2.4033 0.7642 36 1 2.3165 1.3284 2.1391 37 1 3.6515 0.5577 1.2492 38 1 4.6603 2.3530 2.9876 39 1 4.9392 6.2912 2.8687 40 1 3.4834 5.4527 2.2799 41 1 4.1355 5.0779 3.8931 42 1 6.3532 3.9451 4.1482 43 1 7.5025 5.6525 1.8227 44 1 7.7074 5.9185 3.6097 45 1 9.9424 3.2575 1.4745 46 1 9.1283 4.7415 0.9241 47 1 11.7848 4.9879 0.5408 48 1 14.6545 6.0766 -0.7706 49 1 7.6367 2.1722 3.0443 50 1 7.4505 2.9596 1.4168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675305830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:47 Heat of formation + Delta-G solvation = -93.830217 kcal Electronic energy + Delta-G solvation = -29422.189612 eV Core-core repulsion = 25257.044138 eV Total energy + Delta-G solvation = -4165.145475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60915 -40.84161 -39.66716 -38.79619 -36.27246 -35.87557 -33.94812 -33.32570 -32.80159 -31.87904 -30.66939 -28.74528 -27.43041 -26.99893 -25.64868 -24.00552 -22.66156 -21.40473 -20.98991 -20.56854 -20.53758 -19.89759 -18.28619 -17.85059 -17.52672 -17.25926 -16.77586 -16.56699 -16.53273 -16.23495 -15.95325 -15.62237 -15.44945 -15.35707 -14.86473 -14.69169 -14.12632 -14.01843 -13.88908 -13.69990 -13.52215 -13.43712 -13.18745 -13.13930 -12.97376 -12.83311 -12.62079 -12.44113 -12.43615 -12.36697 -12.14213 -11.98386 -11.86326 -11.81737 -11.58718 -11.50187 -11.13443 -10.51020 -10.38595 -10.28657 -10.02219 -10.00116 -9.61163 -8.47400 -5.96455 1.34018 1.37224 1.40473 1.53630 1.80227 2.04656 2.23028 2.27974 2.77654 3.18557 3.34162 3.38577 3.45741 3.65707 3.75302 3.83602 4.07697 4.10874 4.17576 4.20854 4.27317 4.37629 4.40247 4.43916 4.49102 4.51225 4.54205 4.66344 4.76206 4.77405 4.80437 4.83368 4.89659 4.95868 5.03115 5.17801 5.21080 5.31988 5.39173 5.40031 5.43262 5.64503 5.70487 5.84385 5.89560 6.08141 6.59713 6.70577 6.90515 7.12087 7.45159 7.55459 8.11824 8.70102 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.001811 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.891588 B =15455.934795 C =16028.934354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.190 4.190 3 C 0.173 3.827 4 C -0.150 4.150 5 O -0.563 6.563 6 C -0.157 4.157 7 C 0.509 3.491 8 O -0.563 6.563 9 N -0.714 5.714 10 C 0.160 3.840 11 H 0.063 0.937 12 C -0.156 4.156 13 C -0.097 4.097 14 C 0.013 3.987 15 N -0.481 5.481 16 C 0.024 3.976 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.014 3.986 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.380 0.620 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.415 0.585 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.107 0.893 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.343 -14.887 2.235 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.208 4.208 3 C 0.132 3.868 4 C -0.207 4.207 5 O -0.370 6.370 6 C -0.197 4.197 7 C 0.297 3.703 8 O -0.441 6.441 9 N -0.367 5.367 10 C 0.055 3.945 11 H 0.082 0.918 12 C -0.214 4.214 13 C -0.116 4.116 14 C -0.117 4.117 15 N -0.204 5.204 16 C -0.108 4.108 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.114 4.114 29 H 0.131 0.869 30 H 0.119 0.881 31 H 0.150 0.850 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.228 0.772 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.252 0.748 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.138 0.862 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.092 0.908 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.575 -13.981 2.200 30.108 hybrid contribution 0.457 0.337 -0.449 0.724 sum -26.117 -13.644 1.751 29.518 Atomic orbital electron populations 1.24022 0.96110 1.02927 0.98692 1.23594 0.96831 0.98375 1.01972 1.19896 0.88000 0.84496 0.94408 1.21938 0.99195 1.03469 0.96058 1.86716 1.50734 1.49887 1.49707 1.22401 1.00723 0.95689 1.00915 1.21010 0.79216 0.88924 0.81171 1.90707 1.64933 1.51593 1.36856 1.45944 1.44361 1.20658 1.25700 1.20743 0.90303 0.84576 0.98919 0.91843 1.22075 0.99475 0.98461 1.01427 1.23123 0.91638 0.95339 1.01535 1.23952 0.90930 0.95365 1.01441 1.68349 1.07465 1.06059 1.38512 1.22342 0.93469 1.00769 0.94243 1.20800 0.85265 0.84856 0.86159 1.90477 1.81385 1.57396 1.21067 1.41969 1.17496 1.47733 1.14246 1.19666 0.97870 1.29665 0.99178 0.90398 1.26059 1.01176 0.98874 0.95250 1.69677 1.33774 1.46283 1.06511 0.84911 0.77395 0.78047 0.77873 1.19536 1.19490 1.19806 1.24046 0.89577 0.97370 1.00443 0.86892 0.88097 0.85018 0.91689 0.89996 0.93353 0.77156 0.86088 0.85474 0.74846 0.91790 0.93557 0.90787 0.86198 0.91393 0.90628 0.87592 0.90843 0.77123 0.91309 0.87479 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 13.93 67.78 0.94 -0.64 16 2 C -0.19 -1.77 8.77 25.64 0.22 -1.54 16 3 C 0.17 2.34 0.94 -11.54 -0.01 2.33 16 4 C -0.15 -2.67 8.50 71.98 0.61 -2.06 16 5 O -0.56 -10.00 10.85 -131.53 -1.43 -11.42 16 6 C -0.16 -1.41 4.93 29.85 0.15 -1.26 16 7 C 0.51 8.41 7.35 87.66 0.64 9.06 16 8 O -0.56 -14.95 12.62 14.43 0.18 -14.77 16 9 N -0.71 -9.09 4.94 -442.54 -2.19 -11.28 16 10 C 0.16 2.82 2.29 44.99 0.10 2.92 16 11 H 0.06 1.48 7.48 -2.39 -0.02 1.46 16 12 C -0.16 -2.71 9.44 71.98 0.68 -2.03 16 13 C -0.10 -1.80 3.35 -10.15 -0.03 -1.83 16 14 C 0.01 0.35 7.41 86.41 0.64 0.99 16 15 N -0.48 -15.25 5.65 -912.28 -5.15 -20.40 16 16 C 0.02 0.84 5.28 85.56 0.45 1.29 16 17 C 0.44 21.84 7.83 87.65 0.69 22.53 16 18 O -0.62 -35.52 16.01 -3.07 -0.05 -35.57 16 19 N -0.58 -30.56 5.29 -306.98 -1.62 -32.18 16 20 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.66 13.05 21.66 0.28 -50.37 16 24 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 C 0.01 0.29 7.38 86.41 0.64 0.92 16 29 H 0.11 0.68 8.06 -2.91 -0.02 0.66 16 30 H 0.10 0.94 6.41 -2.91 -0.02 0.92 16 31 H 0.13 0.80 8.06 -2.91 -0.02 0.78 16 32 H 0.06 1.59 5.51 -2.38 -0.01 1.58 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.38 3.91 8.05 -74.06 -0.60 3.32 16 36 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.41 2.67 8.60 -92.71 -0.80 1.87 16 39 H 0.06 1.17 8.09 -2.39 -0.02 1.15 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 1.88 7.36 -2.39 -0.02 1.87 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.11 3.34 8.08 -2.39 -0.02 3.32 16 46 H 0.07 2.37 7.38 -2.39 -0.02 2.35 16 47 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 48 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 49 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.07 1.47 7.88 -2.39 -0.02 1.45 16 Total: -1.00 -80.00 409.48 -2.10 -82.11 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -1.16 Total: 36.45 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 7.01 Total: 11.72 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -8.68 Total: -114.24 kcal Atomic # 8 Polarization: -60.46 SS G_CDS: -1.29 Total: -61.76 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -80.00 -2.10 -82.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675305830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.724 kcal (2) G-P(sol) polarization free energy of solvation -80.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds