Wall clock time and date at job start Tue Mar 31 2020 22:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47596 * 2 1 4 4 C 1.52997 * 109.47237 * 239.99732 * 2 1 3 5 5 C 1.53002 * 109.47536 * 175.00214 * 4 2 1 6 6 C 1.52993 * 109.47442 * 180.02562 * 5 4 2 7 7 N 1.46903 * 109.47295 * 179.97438 * 6 5 4 8 8 C 1.46900 * 110.99866 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47082 * 180.02562 * 8 7 6 10 10 O 1.21297 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00366 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00004 * 180.02562 * 11 9 8 13 13 H 1.07996 * 120.00009 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99886 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99811 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00240 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47188 * 89.99815 * 16 14 12 18 18 H 1.48497 * 109.47695 * 210.00167 * 16 14 12 19 19 H 1.48510 * 109.47141 * 330.00259 * 16 14 12 20 20 N 1.46504 * 109.47279 * 120.00317 * 2 1 3 21 21 C 1.34783 * 119.99502 * 274.99747 * 20 2 1 22 22 O 1.21738 * 120.00042 * 0.02562 * 21 20 2 23 23 C 1.41806 * 119.99531 * 179.97438 * 21 20 2 24 24 C 1.33453 * 118.78191 * 179.97438 * 23 21 20 25 25 O 1.34437 * 123.09977 * 180.43265 * 24 23 21 26 26 C 1.45359 * 117.42257 * 343.69039 * 25 24 23 27 27 C 1.53477 * 108.29631 * 47.46477 * 26 25 24 28 28 C 1.50412 * 118.78994 * 0.02562 * 23 21 20 29 29 H 1.09000 * 109.46728 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46714 * 299.99836 * 1 2 3 31 31 H 1.09000 * 109.46897 * 60.00231 * 1 2 3 32 32 H 1.09007 * 109.47487 * 295.00358 * 4 2 1 33 33 H 1.09006 * 109.46928 * 54.99917 * 4 2 1 34 34 H 1.09011 * 109.46694 * 300.00046 * 5 4 2 35 35 H 1.08996 * 109.47353 * 59.99926 * 5 4 2 36 36 H 1.09007 * 109.47104 * 299.99852 * 6 5 4 37 37 H 1.09006 * 109.47405 * 59.99468 * 6 5 4 38 38 H 1.00893 * 111.00000 * 303.95093 * 7 6 5 39 39 H 1.08999 * 109.47144 * 300.00003 * 8 7 6 40 40 H 1.08992 * 109.47358 * 60.00085 * 8 7 6 41 41 H 0.96998 * 119.99265 * 359.97438 * 11 9 8 42 42 H 0.96998 * 120.00110 * 180.02562 * 15 14 12 43 43 H 0.97001 * 120.00671 * 94.99837 * 20 2 1 44 44 H 1.07997 * 118.46399 * 0.43403 * 24 23 21 45 45 H 1.09002 * 109.70736 * 287.75145 * 26 25 24 46 46 H 1.09003 * 109.70464 * 167.17860 * 26 25 24 47 47 H 1.08999 * 109.70852 * 56.97038 * 27 26 25 48 48 H 1.09004 * 109.70320 * 177.58274 * 27 26 25 49 49 H 1.09002 * 109.45541 * 42.27034 * 28 23 21 50 50 H 1.09003 * 109.43535 * 282.32827 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 6 4.0748 -1.3341 -2.5631 7 7 5.5388 -1.2300 -2.6254 8 6 6.0650 -1.9129 -3.8148 9 6 7.5663 -1.7855 -3.8441 10 8 8.1414 -1.1846 -2.9612 11 7 8.2701 -2.3385 -4.8518 12 6 9.6360 -2.2230 -4.8781 13 1 10.1479 -1.6887 -4.0915 14 6 10.3615 -2.7936 -5.9167 15 7 9.7385 -3.4442 -6.8735 16 14 12.2224 -2.6357 -5.9530 17 1 12.8306 -3.7814 -5.2299 18 1 12.6918 -2.6341 -7.3618 19 1 12.6245 -1.3661 -5.2959 20 7 2.0184 -0.6907 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8572 1.1628 2.4119 23 6 2.6193 -0.6869 3.5151 24 6 2.7380 0.0024 4.6516 25 8 3.1841 -0.5418 5.7971 26 6 3.2033 -1.9925 5.8862 27 6 3.8468 -2.5453 4.6071 28 6 2.9691 -2.1465 3.4167 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7716 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4370 -1.3574 35 1 3.9995 -1.0729 -0.4260 36 1 3.7864 -2.3845 -2.5199 37 1 3.6401 -0.8743 -3.4508 38 1 5.8340 -0.2655 -2.6015 39 1 5.7908 -2.9672 -3.7796 40 1 5.6439 -1.4577 -4.7112 41 1 7.8102 -2.8187 -5.5580 42 1 10.2450 -3.8428 -7.5984 43 1 2.2491 -1.6319 1.1526 44 1 2.4626 1.0467 4.6514 45 1 2.1843 -2.3687 5.9771 46 1 3.7872 -2.2998 6.7538 47 1 4.8443 -2.1231 4.4855 48 1 3.9119 -3.6317 4.6684 49 1 3.5111 -2.3282 2.4886 50 1 2.0548 -2.7399 3.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675862892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:19 Heat of formation + Delta-G solvation = -115.329409 kcal Electronic energy + Delta-G solvation = -28654.801419 eV Core-core repulsion = 24488.723669 eV Total energy + Delta-G solvation = -4166.077750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.98032 -39.55000 -38.31036 -37.08065 -35.46957 -34.69455 -33.87240 -32.46013 -31.88745 -31.20233 -30.33939 -27.30557 -26.19929 -25.25961 -24.69034 -23.44316 -22.05796 -21.40729 -20.88027 -19.31013 -19.19248 -18.23253 -17.87164 -16.90705 -16.42277 -16.14685 -15.92397 -15.57896 -15.46193 -14.91909 -14.75242 -14.50603 -14.40291 -14.21395 -13.89127 -13.85713 -13.63268 -13.46371 -13.26196 -13.24473 -12.88749 -12.65293 -12.36692 -11.99413 -11.77218 -11.64542 -11.55469 -11.40902 -11.37492 -11.29955 -11.10325 -11.05504 -10.87977 -10.72612 -10.39073 -10.21241 -10.01881 -9.50464 -9.27820 -8.82780 -8.44887 -8.03771 -7.95042 -6.41298 -3.82023 1.10278 2.76770 3.14852 3.18225 3.20202 3.26679 3.32807 3.91748 4.07028 4.18584 4.24748 4.27897 4.42562 4.59589 4.69682 4.79000 4.81074 4.89174 4.96617 5.01094 5.09356 5.16778 5.18729 5.25495 5.30960 5.36190 5.40307 5.42853 5.56314 5.61397 5.62431 5.65321 5.69680 5.79411 5.81971 5.86591 5.96882 5.99830 6.11031 6.20831 6.29879 6.38191 6.80657 7.25424 7.38352 7.55703 7.68945 8.07114 8.11965 8.62087 9.18486 9.55012 10.06723 10.76503 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012805 B = 0.001812 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.121253 B =15448.030309 C =17015.017896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.270 1.270 20 N -0.722 5.722 21 C 0.575 3.425 22 O -0.562 6.562 23 C -0.319 4.319 24 C 0.160 3.840 25 O -0.311 6.311 26 C 0.052 3.948 27 C -0.158 4.158 28 C -0.074 4.074 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.349 0.651 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.399 0.601 44 H 0.180 0.820 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.240 0.069 18.744 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.758 3.242 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 N -0.374 5.374 21 C 0.366 3.634 22 O -0.444 6.444 23 C -0.323 4.323 24 C 0.092 3.908 25 O -0.221 6.221 26 C -0.022 4.022 27 C -0.196 4.196 28 C -0.111 4.111 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.234 0.766 44 H 0.196 0.804 45 H 0.091 0.909 46 H 0.127 0.873 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.782 0.749 19.784 28.703 hybrid contribution 0.445 -0.454 -1.607 1.728 sum -20.337 0.295 18.177 27.278 Atomic orbital electron populations 1.22168 0.95432 1.01950 1.02475 1.20958 0.93690 0.97764 0.83832 0.89319 1.21875 0.96273 1.01055 0.97173 1.21554 0.94012 1.01088 0.98819 1.21976 0.88264 1.00442 0.96354 1.60065 1.08107 1.21486 1.40670 1.21662 0.94976 1.00082 0.91464 1.19841 0.88146 0.84962 0.84464 1.90524 1.71165 1.46237 1.38786 1.41869 1.07414 1.48544 1.22294 1.19706 0.81536 1.32786 1.08805 0.87934 1.25267 1.00716 0.96615 0.95433 1.69611 1.36676 1.35913 1.12177 0.85850 0.82183 0.78929 0.77280 1.20391 1.20947 1.19421 1.45994 1.67711 1.13975 1.09689 1.16556 0.77237 0.86334 0.83272 1.90802 1.52255 1.15793 1.85550 1.20041 1.18384 0.98650 0.95274 1.23009 0.85985 0.98202 0.83555 1.86313 1.77728 1.23624 1.34479 1.23573 1.01927 0.77227 0.99435 1.22192 1.00382 1.02450 0.94556 1.20263 0.99754 0.91729 0.99353 0.92612 0.92177 0.91663 0.91307 0.90344 0.91879 0.90918 0.91294 0.95679 0.83200 0.89700 0.93958 0.77469 0.91894 0.76562 0.80380 0.90854 0.87273 0.90008 0.89338 0.89974 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.14 1.25 2.57 -67.93 -0.17 1.07 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 4 C -0.13 -0.97 4.75 -26.73 -0.13 -1.10 16 5 C -0.12 -1.20 5.36 -26.73 -0.14 -1.34 16 6 C 0.06 0.71 5.68 -3.83 -0.02 0.69 16 7 N -0.67 -11.03 6.13 -115.06 -0.70 -11.73 16 8 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 9 C 0.44 10.58 7.82 -10.99 -0.09 10.50 16 10 O -0.58 -16.15 15.78 5.54 0.09 -16.06 16 11 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 12 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 13 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 15 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 16 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 20 N -0.72 -6.36 4.44 -56.65 -0.25 -6.61 16 21 C 0.57 6.34 7.50 -14.89 -0.11 6.22 16 22 O -0.56 -8.08 15.58 5.16 0.08 -8.00 16 23 C -0.32 -2.87 5.70 -105.07 -0.60 -3.47 16 24 C 0.16 1.43 10.47 29.06 0.30 1.73 16 25 O -0.31 -2.55 10.48 -15.13 -0.16 -2.71 16 26 C 0.05 0.27 7.15 37.40 0.27 0.54 16 27 C -0.16 -0.87 6.23 -26.39 -0.16 -1.03 16 28 C -0.07 -0.48 5.08 -27.93 -0.14 -0.62 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.35 6.01 8.43 -39.30 -0.33 5.68 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.40 2.77 6.71 -40.82 -0.27 2.50 16 44 H 0.18 1.59 7.21 -52.49 -0.38 1.21 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.08 0.53 7.15 -51.93 -0.37 0.16 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 411.09 15.07 6.20 6.20 Total: -1.00 -34.33 411.09 -8.35 -42.68 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -8.33 Total: 13.48 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.92 Total: 5.06 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.29 Total: -56.82 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.01 Total: -26.76 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.33 -8.35 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675862892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.647 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds