Wall clock time and date at job start Tue Mar 31 2020 23:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00317 * 2 1 4 4 H 1.09003 * 109.47547 * 329.99775 * 3 2 1 5 5 C 1.53003 * 109.47227 * 89.99839 * 3 2 1 6 6 C 1.53001 * 109.47298 * 210.00204 * 3 2 1 7 7 C 1.50701 * 109.47364 * 64.99743 * 6 3 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99677 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99305 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55903 * 94.99514 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50313 * 118.54933 * 274.97776 * 11 10 9 29 29 H 1.08997 * 109.47261 * 300.00382 * 1 2 3 30 30 H 1.09004 * 109.47218 * 59.99938 * 1 2 3 31 31 H 1.08993 * 109.47533 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46527 * 60.00401 * 5 3 2 33 33 H 1.09005 * 109.46916 * 179.97438 * 5 3 2 34 34 H 1.08989 * 109.47044 * 300.00031 * 5 3 2 35 35 H 1.09006 * 109.47017 * 304.99659 * 6 3 2 36 36 H 1.09004 * 109.47583 * 185.00430 * 6 3 2 37 37 H 0.96995 * 120.00499 * 0.02562 * 9 7 6 38 38 H 1.08995 * 109.47150 * 60.00098 * 10 9 7 39 39 H 1.09003 * 109.47146 * 299.99438 * 10 9 7 40 40 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 41 41 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 42 42 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 43 43 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 44 44 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 45 45 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 48 48 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 49 49 H 1.09000 * 109.42632 * 283.57557 * 28 11 10 50 50 H 1.08996 * 109.43207 * 43.42603 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2631 -0.7213 7 6 3.1416 0.9234 -2.1734 8 8 2.0186 0.7343 -2.5903 9 7 4.1953 0.8299 -3.0085 10 6 3.9840 0.5003 -4.4202 11 6 5.3125 0.4573 -5.1303 12 6 5.9082 -0.6884 -5.2637 13 6 7.2365 -0.8523 -5.9441 14 7 7.5409 0.3315 -6.7579 15 6 8.8944 0.2482 -7.3229 16 6 8.9582 -0.8903 -8.3081 17 8 7.9730 -1.5656 -8.5192 18 7 10.1098 -1.1575 -8.9554 19 6 10.1694 -2.1969 -9.8475 20 1 9.2924 -2.7987 -10.0349 21 6 11.3582 -2.4760 -10.5106 22 7 12.4255 -1.7440 -10.2822 23 14 11.4393 -3.8916 -11.7266 24 1 10.1125 -4.5542 -11.8041 25 1 11.8116 -3.3721 -13.0670 26 1 12.4580 -4.8736 -11.2759 27 6 7.3783 1.5555 -5.9559 28 6 5.8894 1.7431 -5.6533 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8830 1.0773 1.9563 33 1 2.6615 2.7669 1.4425 34 1 1.2569 1.8014 1.9563 35 1 3.9931 0.5050 -0.2617 36 1 3.8428 2.2368 -0.6443 37 1 5.0935 0.9809 -2.6749 38 1 3.3504 1.2589 -4.8796 39 1 3.4996 -0.4732 -4.4974 40 1 5.4240 -1.5677 -4.8652 41 1 7.2075 -1.7333 -6.5852 42 1 8.0140 -0.9823 -5.1912 43 1 9.6126 0.0758 -6.5213 44 1 9.1341 1.1822 -7.8309 45 1 10.8976 -0.6173 -8.7868 46 1 13.2552 -1.9386 -10.7453 47 1 7.9324 1.4581 -5.0222 48 1 7.7489 2.4132 -6.5173 49 1 5.3670 2.0301 -6.5659 50 1 5.7675 2.5261 -4.9050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677543141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:40 Heat of formation + Delta-G solvation = -101.676814 kcal Electronic energy + Delta-G solvation = -28827.155146 eV Core-core repulsion = 24661.669418 eV Total energy + Delta-G solvation = -4165.485729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.16852 -39.29898 -38.21893 -37.66863 -35.43345 -33.93554 -33.33963 -32.81030 -31.23771 -30.76540 -29.19514 -27.87733 -26.82051 -25.73995 -24.14557 -23.58619 -22.20113 -21.69061 -20.58101 -19.23799 -17.95394 -17.87260 -17.22901 -17.14268 -16.42928 -16.13634 -15.57131 -15.49480 -15.28710 -15.06948 -14.80949 -14.58934 -14.14863 -13.92054 -13.85572 -13.69202 -13.58785 -13.25030 -12.98560 -12.90628 -12.73913 -12.43991 -12.37632 -12.19779 -12.11536 -11.85373 -11.74600 -11.50378 -11.35383 -11.11013 -11.08549 -10.88053 -10.46765 -10.34392 -10.22737 -10.09577 -9.88053 -9.50790 -9.23113 -8.87817 -8.48077 -7.98897 -7.85032 -6.42547 -3.83213 2.00779 2.48969 3.15907 3.18895 3.26750 3.33952 3.48762 3.88745 3.97438 4.24026 4.36461 4.43299 4.57885 4.72460 4.75713 4.94100 5.01444 5.04417 5.04833 5.15584 5.21566 5.24492 5.25687 5.27205 5.31297 5.41814 5.50052 5.51993 5.53617 5.54325 5.67569 5.68443 5.74225 5.77712 5.90626 5.94416 6.10194 6.23253 6.24140 6.33643 6.45200 6.91891 6.93254 7.29742 7.32318 7.33845 7.54952 8.05742 8.06101 8.61102 9.17729 9.53765 10.05515 10.75247 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030183 B = 0.001605 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.464130 B =17440.406224 C =17819.618890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.141 4.141 7 C 0.513 3.487 8 O -0.535 6.535 9 N -0.727 5.727 10 C 0.159 3.841 11 C -0.156 4.156 12 C -0.107 4.107 13 C 0.073 3.927 14 N -0.509 5.509 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.050 3.950 28 C -0.070 4.070 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.033 0.967 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 10.837 22.133 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.181 4.181 7 C 0.299 3.701 8 O -0.412 6.412 9 N -0.380 5.380 10 C 0.037 3.963 11 C -0.157 4.157 12 C -0.126 4.126 13 C -0.054 4.054 14 N -0.233 5.233 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.078 4.078 28 C -0.107 4.107 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.861 10.071 21.187 28.317 hybrid contribution 1.566 -0.093 0.259 1.590 sum -14.294 9.978 21.446 27.637 Atomic orbital electron populations 1.22697 0.80962 1.02520 0.99692 1.87887 1.19852 1.26913 1.94942 1.21773 0.93537 0.85926 0.94620 0.91410 1.22307 1.02651 1.01658 0.96684 1.21863 0.99204 1.04454 0.92615 1.20553 0.84779 0.76788 0.87931 1.90698 1.23368 1.49216 1.77870 1.46145 1.09713 1.72308 1.09794 1.20296 0.94845 1.01459 0.79720 1.20849 0.96477 0.95997 1.02393 1.22347 0.96634 0.97046 0.96590 1.21253 0.93016 0.96025 0.95128 1.62033 1.25869 1.01518 1.33906 1.21908 0.89138 0.99986 0.97628 1.19741 0.84487 0.87422 0.85493 1.90485 1.35390 1.52596 1.67658 1.41874 1.10519 1.30018 1.37686 1.19756 0.97926 1.07868 1.17219 0.87838 1.25256 0.94938 0.98951 0.98802 1.69620 1.01517 1.39816 1.43387 0.85805 0.78476 0.80444 0.79650 1.19216 1.20759 1.20798 1.22222 0.96007 0.93646 0.95955 1.20392 0.95158 0.94468 1.00729 0.94664 0.93552 0.89982 0.91613 0.91466 0.92158 0.87984 0.87679 0.76605 0.91107 0.91168 0.87170 0.86472 0.94202 0.93446 0.89194 0.77508 0.91945 0.94895 0.90446 0.90108 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -3.95 9.58 -49.64 -0.48 -4.43 16 3 C 0.10 0.79 2.27 -26.73 -0.06 0.73 16 4 H 0.07 0.57 7.60 -51.93 -0.39 0.18 16 5 C -0.18 -0.96 9.53 37.16 0.35 -0.61 16 6 C -0.14 -0.96 5.41 -27.88 -0.15 -1.11 16 7 C 0.51 5.28 7.71 -10.98 -0.08 5.20 16 8 O -0.54 -7.63 15.42 -8.85 -0.14 -7.77 16 9 N -0.73 -6.51 5.55 -61.47 -0.34 -6.85 16 10 C 0.16 1.72 5.72 -5.19 -0.03 1.69 16 11 C -0.16 -1.79 5.26 -100.92 -0.53 -2.32 16 12 C -0.11 -1.39 9.50 -35.97 -0.34 -1.73 16 13 C 0.07 1.15 5.22 -5.28 -0.03 1.12 16 14 N -0.51 -8.25 4.46 -237.56 -1.06 -9.31 16 15 C 0.04 0.78 5.44 -4.98 -0.03 0.75 16 16 C 0.44 10.26 7.54 -10.99 -0.08 10.18 16 17 O -0.58 -15.30 13.88 5.55 0.08 -15.22 16 18 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.05 0.60 5.59 -3.59 -0.02 0.58 16 28 C -0.07 -0.75 6.04 -28.03 -0.17 -0.92 16 29 H 0.03 0.23 7.87 -51.93 -0.41 -0.18 16 30 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.32 7.87 -51.94 -0.41 -0.09 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.40 2.67 8.46 -40.82 -0.35 2.33 16 38 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 40 H 0.11 1.33 7.81 -52.49 -0.41 0.92 16 41 H 0.12 2.28 5.98 -51.93 -0.31 1.97 16 42 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 43 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 44 H 0.09 1.41 7.94 -51.93 -0.41 0.99 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 48 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 409.38 15.07 6.17 6.17 Total: -1.00 -33.83 409.38 -8.84 -42.67 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.40 Total: 9.50 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.32 Total: 7.07 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.73 Total: -53.91 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.54 Total: -27.42 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.83 -8.84 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677543141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.004 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds