Wall clock time and date at job start Tue Mar 31 2020 23:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00317 * 2 1 4 4 H 1.09003 * 109.47547 * 329.99775 * 3 2 1 5 5 C 1.53003 * 109.47227 * 89.99839 * 3 2 1 6 6 C 1.53001 * 109.47298 * 210.00204 * 3 2 1 7 7 C 1.50701 * 109.47364 * 64.99743 * 6 3 2 8 8 O 1.21282 * 119.99610 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99677 * 180.02562 * 7 6 3 10 10 C 1.46505 * 119.99305 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46784 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55903 * 94.99514 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50313 * 118.54933 * 274.97776 * 11 10 9 29 29 H 1.08997 * 109.47261 * 300.00382 * 1 2 3 30 30 H 1.09004 * 109.47218 * 59.99938 * 1 2 3 31 31 H 1.08993 * 109.47533 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46527 * 60.00401 * 5 3 2 33 33 H 1.09005 * 109.46916 * 179.97438 * 5 3 2 34 34 H 1.08989 * 109.47044 * 300.00031 * 5 3 2 35 35 H 1.09006 * 109.47017 * 304.99659 * 6 3 2 36 36 H 1.09004 * 109.47583 * 185.00430 * 6 3 2 37 37 H 0.96995 * 120.00499 * 0.02562 * 9 7 6 38 38 H 1.08995 * 109.47150 * 60.00098 * 10 9 7 39 39 H 1.09003 * 109.47146 * 299.99438 * 10 9 7 40 40 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 41 41 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 42 42 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 43 43 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 44 44 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 45 45 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 48 48 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 49 49 H 1.09000 * 109.42632 * 283.57557 * 28 11 10 50 50 H 1.08996 * 109.43207 * 43.42603 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2631 -0.7213 7 6 3.1416 0.9234 -2.1734 8 8 2.0186 0.7343 -2.5903 9 7 4.1953 0.8299 -3.0085 10 6 3.9840 0.5003 -4.4202 11 6 5.3125 0.4573 -5.1303 12 6 5.9082 -0.6884 -5.2637 13 6 7.2365 -0.8523 -5.9441 14 7 7.5409 0.3315 -6.7579 15 6 8.8944 0.2482 -7.3229 16 6 8.9582 -0.8903 -8.3081 17 8 7.9730 -1.5656 -8.5192 18 7 10.1098 -1.1575 -8.9554 19 6 10.1694 -2.1969 -9.8475 20 1 9.2924 -2.7987 -10.0349 21 6 11.3582 -2.4760 -10.5106 22 7 12.4255 -1.7440 -10.2822 23 14 11.4393 -3.8916 -11.7266 24 1 10.1125 -4.5542 -11.8041 25 1 11.8116 -3.3721 -13.0670 26 1 12.4580 -4.8736 -11.2759 27 6 7.3783 1.5555 -5.9559 28 6 5.8894 1.7431 -5.6533 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8830 1.0773 1.9563 33 1 2.6615 2.7669 1.4425 34 1 1.2569 1.8014 1.9563 35 1 3.9931 0.5050 -0.2617 36 1 3.8428 2.2368 -0.6443 37 1 5.0935 0.9809 -2.6749 38 1 3.3504 1.2589 -4.8796 39 1 3.4996 -0.4732 -4.4974 40 1 5.4240 -1.5677 -4.8652 41 1 7.2075 -1.7333 -6.5852 42 1 8.0140 -0.9823 -5.1912 43 1 9.6126 0.0758 -6.5213 44 1 9.1341 1.1822 -7.8309 45 1 10.8976 -0.6173 -8.7868 46 1 13.2552 -1.9386 -10.7453 47 1 7.9324 1.4581 -5.0222 48 1 7.7489 2.4132 -6.5173 49 1 5.3670 2.0301 -6.5659 50 1 5.7675 2.5261 -4.9050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677543141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:39 Heat of formation + Delta-G solvation = -127.072913 kcal Electronic energy + Delta-G solvation = -28828.256404 eV Core-core repulsion = 24661.669418 eV Total energy + Delta-G solvation = -4166.586986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02741 -40.58165 -39.39459 -38.75650 -36.53759 -35.83935 -34.19770 -33.63308 -33.22088 -31.77792 -30.13074 -28.83923 -27.55735 -27.08943 -25.67022 -24.64408 -23.14386 -22.47846 -21.32479 -21.04379 -19.87773 -18.82868 -18.07650 -17.84623 -17.74805 -17.24283 -16.75254 -16.64228 -16.31521 -16.00598 -15.92261 -15.86312 -15.52606 -15.33220 -15.31520 -14.70092 -14.57469 -14.14504 -13.88669 -13.80008 -13.68276 -13.50939 -13.46062 -13.25057 -13.03179 -12.95940 -12.89640 -12.76331 -12.48256 -12.40099 -12.31035 -12.11916 -12.07119 -11.64954 -11.46891 -11.44626 -10.95111 -10.52452 -10.26608 -10.07371 -9.99475 -9.86514 -9.16788 -8.45839 -5.93991 1.03641 1.36564 1.41978 1.55793 1.71916 2.07230 2.29045 2.42878 2.79180 2.91016 3.21180 3.40170 3.59142 3.78952 3.81901 3.89698 4.18486 4.22866 4.28676 4.37208 4.39255 4.43034 4.45722 4.47567 4.54226 4.58156 4.59395 4.63775 4.65031 4.71624 4.74601 4.79739 4.83803 4.91219 4.96773 5.06256 5.08956 5.20639 5.33424 5.38877 5.42669 5.45454 5.87340 5.97159 6.14379 6.23011 6.32366 6.61144 6.62680 7.14900 7.31681 7.58586 8.14985 8.71738 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030183 B = 0.001605 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.464130 B =17440.406224 C =17819.618890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.404 6.404 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.168 4.168 6 C -0.135 4.135 7 C 0.508 3.492 8 O -0.581 6.581 9 N -0.715 5.715 10 C 0.166 3.834 11 C -0.132 4.132 12 C -0.127 4.127 13 C 0.079 3.921 14 N -0.532 5.532 15 C 0.058 3.942 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.050 3.950 28 C -0.069 4.069 29 H 0.054 0.946 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.141 0.859 37 H 0.415 0.585 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.113 0.887 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.051 0.949 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 12.786 23.856 30.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.324 6.324 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.225 4.225 6 C -0.174 4.174 7 C 0.296 3.704 8 O -0.461 6.461 9 N -0.368 5.368 10 C 0.043 3.957 11 C -0.133 4.133 12 C -0.147 4.147 13 C -0.048 4.048 14 N -0.257 5.257 15 C -0.073 4.073 16 C 0.227 3.773 17 O -0.502 6.502 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.077 4.077 28 C -0.107 4.107 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.159 0.841 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.131 0.869 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.111 0.889 49 H 0.092 0.908 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.029 12.055 22.940 29.958 hybrid contribution 1.249 -0.655 -0.251 1.433 sum -13.780 11.400 22.689 28.890 Atomic orbital electron populations 1.22738 0.80429 1.02886 0.99904 1.87839 1.20684 1.28698 1.95165 1.21992 0.93707 0.84759 0.96229 0.92570 1.22250 1.02865 1.02693 0.94731 1.21949 0.99104 1.06741 0.89599 1.21237 0.84110 0.75726 0.89320 1.90686 1.25225 1.51300 1.78872 1.45999 1.10410 1.71586 1.08808 1.20099 0.94166 1.00571 0.80913 1.20939 0.95831 0.95925 1.00607 1.22196 0.96201 0.98014 0.98279 1.21009 0.94863 0.94512 0.94427 1.61973 1.25067 1.03164 1.35536 1.21777 0.90754 0.97990 0.96826 1.20850 0.83157 0.88007 0.85241 1.90470 1.36635 1.54265 1.68815 1.41935 1.11380 1.29899 1.38005 1.19679 0.97755 1.09340 1.19332 0.90478 1.25990 0.94234 1.01043 0.99903 1.69673 1.01848 1.40688 1.43907 0.84897 0.78143 0.77655 0.77794 1.19995 1.19645 1.19605 1.22363 0.97062 0.91930 0.96361 1.20474 0.94168 0.94661 1.01360 0.92743 0.94980 0.89650 0.91462 0.89387 0.92259 0.86694 0.84077 0.74867 0.91296 0.92907 0.86958 0.91127 0.93409 0.91255 0.86882 0.76995 0.91352 0.93054 0.88883 0.90779 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.82 113.37 1.23 1.84 16 2 O -0.40 -8.30 9.58 -135.20 -1.30 -9.59 16 3 C 0.09 1.31 2.27 30.60 0.07 1.38 16 4 H 0.06 0.92 7.60 -2.39 -0.02 0.90 16 5 C -0.17 -1.43 9.53 71.98 0.69 -0.74 16 6 C -0.13 -1.49 5.41 29.85 0.16 -1.32 16 7 C 0.51 9.73 7.71 87.66 0.68 10.41 16 8 O -0.58 -16.60 15.42 10.74 0.17 -16.44 16 9 N -0.72 -11.33 5.55 -466.77 -2.59 -13.92 16 10 C 0.17 3.40 5.72 85.63 0.49 3.89 16 11 C -0.13 -2.82 5.26 -15.40 -0.08 -2.90 16 12 C -0.13 -3.28 9.50 26.68 0.25 -3.03 16 13 C 0.08 2.52 5.22 85.39 0.45 2.96 16 14 N -0.53 -16.64 4.46 -905.51 -4.04 -20.68 16 15 C 0.06 1.93 5.44 85.56 0.47 2.39 16 16 C 0.44 20.78 7.54 87.66 0.66 21.44 16 17 O -0.62 -34.04 13.88 -3.07 -0.04 -34.08 16 18 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 19 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 23 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.05 1.05 5.59 86.27 0.48 1.53 16 28 C -0.07 -1.29 6.04 29.76 0.18 -1.11 16 29 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 30 H 0.03 0.61 8.09 -2.38 -0.02 0.59 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.06 0.52 7.87 -2.39 -0.02 0.50 16 35 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.14 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.41 4.20 8.46 -92.71 -0.78 3.42 16 38 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 39 H 0.05 1.29 7.85 -2.39 -0.02 1.27 16 40 H 0.11 2.78 7.81 -2.91 -0.02 2.75 16 41 H 0.07 2.91 5.98 -2.39 -0.01 2.89 16 42 H 0.05 1.39 8.06 -2.39 -0.02 1.37 16 43 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 44 H 0.11 3.27 7.94 -2.39 -0.02 3.25 16 45 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 46 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 47 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 48 H 0.09 1.69 7.92 -2.39 -0.02 1.67 16 49 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 50 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.72 409.38 -0.69 -77.40 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.57 Total: 33.66 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 7.00 Total: 18.53 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -7.97 Total: -114.63 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -1.17 Total: -60.11 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -76.72 -0.69 -77.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677543141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.671 kcal (2) G-P(sol) polarization free energy of solvation -76.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds