Wall clock time and date at job start Tue Mar 31 2020 23:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99832 * 2 1 4 4 H 1.08999 * 109.47091 * 329.99324 * 3 2 1 5 5 C 1.52994 * 109.47551 * 89.99581 * 3 2 1 6 6 C 1.53004 * 109.46975 * 209.99662 * 3 2 1 7 7 C 1.50702 * 109.47207 * 64.99695 * 6 3 2 8 8 O 1.21285 * 119.99830 * 0.02562 * 7 6 3 9 9 N 1.34780 * 120.00126 * 180.02562 * 7 6 3 10 10 C 1.47147 * 120.68233 * 179.97438 * 9 7 6 11 11 C 1.53890 * 108.04566 * 132.65886 * 10 9 7 12 12 H 1.09001 * 112.12301 * 182.01055 * 11 10 9 13 13 C 1.54548 * 107.80582 * 306.64692 * 11 10 9 14 14 C 1.54258 * 104.93892 * 88.96690 * 13 11 10 15 15 C 1.54543 * 104.94075 * 359.97438 * 14 13 11 16 16 H 1.08999 * 112.20429 * 146.47286 * 15 14 13 17 17 C 1.48435 * 120.80799 * 0.40830 * 9 7 6 18 18 N 1.48732 * 107.17583 * 58.43426 * 11 10 9 19 19 C 1.46891 * 111.00335 * 167.48067 * 18 11 10 20 20 C 1.50701 * 109.47363 * 298.15472 * 19 18 11 21 21 O 1.21293 * 119.99683 * 353.57591 * 20 19 18 22 22 N 1.34771 * 119.99840 * 173.57169 * 20 19 18 23 23 C 1.37101 * 119.99931 * 180.02562 * 22 20 19 24 24 H 1.08006 * 119.99729 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00194 * 180.02562 * 23 22 20 26 26 N 1.31400 * 120.00054 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99970 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47386 * 89.99936 * 27 25 23 29 29 H 1.48498 * 109.47182 * 210.00209 * 27 25 23 30 30 H 1.48505 * 109.47323 * 330.00382 * 27 25 23 31 31 H 1.09001 * 109.47307 * 300.00550 * 1 2 3 32 32 H 1.09001 * 109.46781 * 60.00900 * 1 2 3 33 33 H 1.09003 * 109.46654 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.47349 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.47514 * 299.99521 * 5 3 2 36 36 H 1.09003 * 109.47324 * 60.00243 * 5 3 2 37 37 H 1.09000 * 109.47134 * 304.99679 * 6 3 2 38 38 H 1.08997 * 109.47151 * 184.99705 * 6 3 2 39 39 H 1.08997 * 109.74550 * 13.02104 * 10 9 7 40 40 H 1.08998 * 109.78804 * 252.31992 * 10 9 7 41 41 H 1.09005 * 110.34800 * 207.82922 * 13 11 10 42 42 H 1.08991 * 110.34934 * 329.99043 * 13 11 10 43 43 H 1.09003 * 110.34064 * 241.13126 * 14 13 11 44 44 H 1.08997 * 110.34891 * 118.87196 * 14 13 11 45 45 H 1.08997 * 110.57862 * 107.84905 * 17 9 7 46 46 H 1.09000 * 109.56445 * 346.70935 * 17 9 7 47 47 H 1.09003 * 109.47348 * 58.15948 * 19 18 11 48 48 H 1.09006 * 109.47531 * 178.15276 * 19 18 11 49 49 H 0.97002 * 120.00820 * 0.02562 * 22 20 19 50 50 H 0.97001 * 120.00462 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2175 1.7715 1.4424 6 6 3.3589 1.2632 -0.7212 7 6 3.1417 0.9234 -2.1733 8 8 2.0187 0.7342 -2.5903 9 7 4.1955 0.8298 -3.0084 10 6 4.0007 0.4984 -4.4288 11 6 4.8260 1.4904 -5.2673 12 1 4.7016 1.3260 -6.3376 13 6 4.4303 2.9198 -4.8331 14 6 5.3834 3.2600 -3.6688 15 6 6.2709 2.0060 -3.5011 16 1 7.2836 2.2573 -3.1859 17 6 5.5782 1.0490 -2.5152 18 7 6.2437 1.3548 -4.8383 19 6 7.1450 2.0380 -5.7756 20 6 7.0287 1.4032 -7.1374 21 8 6.3600 0.4021 -7.2847 22 7 7.6677 1.9480 -8.1916 23 6 7.5615 1.3708 -9.4306 24 1 6.9654 0.4798 -9.5620 25 6 8.2207 1.9321 -10.5174 26 7 8.9464 3.0159 -10.3575 27 14 8.0766 1.1453 -12.2054 28 1 6.9156 1.7274 -12.9255 29 1 9.3180 1.4018 -12.9788 30 1 7.8814 -0.3191 -12.0540 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.6613 2.7671 1.4424 35 1 1.2567 1.8017 1.9562 36 1 2.8829 1.0777 1.9564 37 1 3.9931 0.5052 -0.2616 38 1 3.8427 2.2369 -0.6443 39 1 2.9453 0.5875 -4.6863 40 1 4.3419 -0.5189 -4.6205 41 1 4.5734 3.6194 -5.6567 42 1 3.3943 2.9402 -4.4953 43 1 4.8160 3.4471 -2.7571 44 1 5.9946 4.1267 -3.9202 45 1 6.1234 0.1062 -2.4718 46 1 5.5448 1.5019 -1.5243 47 1 6.8711 3.0910 -5.8409 48 1 8.1721 1.9512 -5.4208 49 1 8.2028 2.7485 -8.0738 50 1 9.4069 3.4076 -11.1161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691813427.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:01 Heat of formation + Delta-G solvation = -120.794450 kcal Electronic energy + Delta-G solvation = -30987.473331 eV Core-core repulsion = 26821.158599 eV Total energy + Delta-G solvation = -4166.314732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.11947 -40.45847 -39.55648 -38.60202 -36.04472 -35.46405 -33.89596 -33.29420 -32.51030 -32.22149 -29.65818 -28.59058 -27.50378 -27.04409 -25.63206 -25.36614 -22.67721 -21.65754 -21.38709 -20.87588 -19.92929 -19.39688 -18.27141 -17.86743 -17.67394 -17.15520 -16.97625 -16.47347 -16.30447 -16.00693 -15.89122 -15.67702 -15.50417 -15.17015 -15.03701 -14.87499 -14.41427 -13.98106 -13.78448 -13.62350 -13.57940 -13.49483 -13.34758 -13.28559 -12.91563 -12.90240 -12.84226 -12.51540 -12.41291 -12.29421 -12.16778 -12.13503 -11.94728 -11.83454 -11.60818 -11.45262 -11.40339 -10.76506 -10.49515 -10.26759 -9.99873 -9.75445 -9.32510 -8.46986 -5.94928 1.36433 1.40403 1.52711 1.72852 1.99659 2.06641 2.27959 2.76748 2.92189 3.20349 3.29119 3.48615 3.71633 3.81878 3.86551 3.92021 4.02393 4.22728 4.23656 4.30274 4.32837 4.41018 4.45666 4.48287 4.52069 4.58099 4.60399 4.61969 4.68915 4.74226 4.75767 4.80653 4.84195 4.86344 4.89736 4.94871 4.97821 5.08741 5.14284 5.25346 5.35803 5.40742 5.50883 5.82881 5.91886 6.10484 6.33698 6.52540 6.60997 7.13500 7.25447 7.57405 8.13481 8.70387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029022 B = 0.002294 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.555224 B =12202.946315 C =12698.918997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.404 6.404 3 C 0.092 3.908 4 H 0.052 0.948 5 C -0.166 4.166 6 C -0.132 4.132 7 C 0.510 3.490 8 O -0.586 6.586 9 N -0.606 5.606 10 C 0.140 3.860 11 C 0.055 3.945 12 H 0.076 0.924 13 C -0.143 4.143 14 C -0.133 4.133 15 C 0.045 3.955 16 H 0.136 0.864 17 C 0.121 3.879 18 N -0.496 5.496 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.616 6.616 22 N -0.574 5.574 23 C -0.330 4.330 24 H 0.076 0.924 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.275 1.275 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.118 0.882 38 H 0.141 0.859 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.067 0.933 48 H 0.116 0.884 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 4.351 25.600 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.323 6.323 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.224 4.224 6 C -0.171 4.171 7 C 0.300 3.700 8 O -0.466 6.466 9 N -0.339 5.339 10 C 0.016 3.984 11 C -0.054 4.054 12 H 0.094 0.906 13 C -0.182 4.182 14 C -0.172 4.172 15 C -0.064 4.064 16 H 0.154 0.846 17 C -0.001 4.001 18 N -0.219 5.219 19 C -0.081 4.081 20 C 0.227 3.773 21 O -0.503 6.503 22 N -0.212 5.212 23 C -0.460 4.460 24 H 0.094 0.906 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.198 1.198 29 H -0.194 1.194 30 H -0.199 1.199 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.148 0.852 47 H 0.085 0.915 48 H 0.134 0.866 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.525 2.954 25.168 26.434 hybrid contribution -0.366 0.851 -1.790 2.016 sum -7.891 3.806 23.378 24.966 Atomic orbital electron populations 1.22729 0.80498 1.02851 0.99807 1.87840 1.20619 1.28686 1.95163 1.21990 0.93546 0.84695 0.96339 0.92962 1.22240 1.02932 1.02769 0.94431 1.21994 0.99271 1.06561 0.89292 1.21278 0.83544 0.75804 0.89353 1.90661 1.25002 1.52212 1.78723 1.48551 1.07792 1.69161 1.08413 1.21380 0.98884 0.97432 0.80670 1.23275 0.88817 0.94406 0.98949 0.90627 1.22785 1.00437 0.96197 0.98805 1.22783 0.97433 0.98602 0.98358 1.23739 1.01097 0.92187 0.89346 0.84589 1.22453 0.79604 1.00123 0.97871 1.65114 1.04075 1.50493 1.02253 1.21840 0.99833 0.96497 0.89910 1.20820 0.83062 0.86382 0.86987 1.90496 1.45154 1.28638 1.85965 1.41942 1.44920 1.27121 1.07208 1.19607 1.29883 1.10769 0.85706 0.90561 1.25984 0.95634 0.96602 1.03024 1.69657 1.31791 1.20995 1.33602 0.84976 0.78102 0.78291 0.77269 1.19813 1.19446 1.19946 0.92620 0.95280 0.89629 0.89318 0.92269 0.91159 0.86353 0.84100 0.91193 0.92957 0.92902 0.91978 0.89230 0.90271 0.90218 0.85161 0.91499 0.86564 0.77031 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.82 113.37 1.23 1.94 16 2 O -0.40 -9.18 9.58 -135.20 -1.30 -10.47 16 3 C 0.09 1.54 2.27 30.59 0.07 1.60 16 4 H 0.05 1.00 7.60 -2.39 -0.02 0.99 16 5 C -0.17 -1.62 9.53 71.98 0.69 -0.94 16 6 C -0.13 -1.85 3.80 29.85 0.11 -1.73 16 7 C 0.51 12.40 7.59 87.66 0.67 13.06 16 8 O -0.59 -19.69 14.88 10.73 0.16 -19.53 16 9 N -0.61 -14.36 2.25 -811.76 -1.83 -16.19 16 10 C 0.14 4.47 5.90 86.56 0.51 4.98 16 11 C 0.06 1.82 3.12 45.39 0.14 1.97 16 12 H 0.08 3.24 5.96 -2.39 -0.01 3.22 16 13 C -0.14 -3.80 5.53 31.55 0.17 -3.63 16 14 C -0.13 -2.38 5.52 31.55 0.17 -2.21 16 15 C 0.04 0.82 3.63 45.38 0.16 0.99 16 16 H 0.14 1.72 8.09 -2.39 -0.02 1.70 16 17 C 0.12 1.92 5.92 86.30 0.51 2.43 16 18 N -0.50 -14.85 4.76 -831.60 -3.96 -18.80 16 19 C 0.05 1.65 5.32 85.56 0.45 2.10 16 20 C 0.44 20.59 7.22 87.66 0.63 21.22 16 21 O -0.62 -33.83 14.10 -3.07 -0.04 -33.87 16 22 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16 23 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 24 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 25 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 26 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 27 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 30 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 31 H 0.06 0.78 7.87 -2.39 -0.02 0.76 16 32 H 0.03 0.63 8.08 -2.39 -0.02 0.61 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 0.48 8.14 -2.38 -0.02 0.47 16 35 H 0.06 0.59 7.87 -2.39 -0.02 0.57 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.12 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.14 0.89 7.62 -2.39 -0.02 0.87 16 39 H 0.07 2.44 7.10 -2.39 -0.02 2.42 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.51 8.10 -2.38 -0.02 1.49 16 42 H 0.06 1.71 7.84 -2.39 -0.02 1.69 16 43 H 0.09 1.23 7.86 -2.39 -0.02 1.21 16 44 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 45 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.13 0.89 6.12 -2.39 -0.01 0.87 16 47 H 0.07 1.97 7.00 -2.39 -0.02 1.95 16 48 H 0.12 3.23 8.14 -2.38 -0.02 3.21 16 49 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 50 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -77.40 391.58 0.74 -76.66 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.21 Total: 33.21 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 6.80 Total: 23.64 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -7.12 Total: -114.95 kcal Atomic # 8 Polarization: -62.70 SS G_CDS: -1.18 Total: -63.88 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.40 0.74 -76.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691813427.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.134 kcal (2) G-P(sol) polarization free energy of solvation -77.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds