Wall clock time and date at job start Tue Mar 31 2020 23:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47446 * 2 1 4 4 C 1.53003 * 109.46824 * 120.00404 * 2 1 3 5 5 N 1.46904 * 109.46955 * 174.99785 * 4 2 1 6 6 C 1.46901 * 110.99799 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.46675 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00367 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99480 * 180.02562 * 7 6 5 10 10 C 1.37102 * 119.99893 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99479 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00133 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99865 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99854 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47000 * 90.00421 * 14 12 10 16 16 H 1.48499 * 109.46897 * 209.99923 * 14 12 10 17 17 H 1.48497 * 109.47475 * 330.00261 * 14 12 10 18 18 N 1.46508 * 109.46911 * 239.99796 * 2 1 3 19 19 C 1.34777 * 119.99862 * 85.00729 * 18 2 1 20 20 O 1.21285 * 119.99765 * 359.97438 * 19 18 2 21 21 C 1.50693 * 120.00196 * 179.97438 * 19 18 2 22 22 H 1.09006 * 115.55198 * 327.83508 * 21 19 18 23 23 C 1.53061 * 117.51080 * 182.12941 * 21 19 18 24 24 C 1.52720 * 117.51292 * 113.54290 * 21 19 18 25 25 C 1.53252 * 117.82228 * 359.59925 * 24 21 19 26 26 C 1.53330 * 108.48928 * 265.30839 * 25 24 21 27 27 O 1.42875 * 109.32377 * 306.03751 * 26 25 24 28 28 C 1.42864 * 114.52686 * 64.36118 * 27 26 25 29 29 C 1.53253 * 117.82584 * 215.33547 * 24 21 19 30 30 H 1.08997 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47163 * 60.00192 * 1 2 3 32 32 H 1.08992 * 109.47164 * 300.00376 * 1 2 3 33 33 H 1.09005 * 109.46872 * 294.99303 * 4 2 1 34 34 H 1.08992 * 109.47290 * 54.99931 * 4 2 1 35 35 H 1.00906 * 110.99700 * 56.04240 * 5 4 2 36 36 H 1.09007 * 109.47248 * 300.00026 * 6 5 4 37 37 H 1.08996 * 109.46935 * 60.00133 * 6 5 4 38 38 H 0.96994 * 120.00272 * 0.02562 * 9 7 6 39 39 H 0.96993 * 119.99828 * 179.97438 * 13 12 10 40 40 H 0.96996 * 119.99979 * 264.99594 * 18 2 1 41 41 H 1.09003 * 117.50191 * 359.97438 * 23 21 19 42 42 H 1.08995 * 117.51027 * 145.03283 * 23 21 19 43 43 H 1.09002 * 109.63249 * 25.00434 * 25 24 21 44 44 H 1.08994 * 109.63171 * 145.60527 * 25 24 21 45 45 H 1.09007 * 109.49565 * 186.08234 * 26 25 24 46 46 H 1.08997 * 109.52362 * 66.01092 * 26 25 24 47 47 H 1.08999 * 109.49512 * 175.68681 * 28 27 26 48 48 H 1.08993 * 109.52334 * 55.60738 * 28 27 26 49 49 H 1.09007 * 109.62484 * 214.38866 * 29 24 21 50 50 H 1.08993 * 109.63616 * 334.78338 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5040 -0.8268 1.1904 6 6 4.0303 -1.5151 2.3767 7 6 5.5317 -1.6036 2.2812 8 8 6.1067 -1.1395 1.3194 9 7 6.2354 -2.1995 3.2642 10 6 7.6012 -2.2805 3.1772 11 1 8.1132 -1.8665 2.3211 12 6 8.3268 -2.8943 4.1908 13 7 7.7038 -3.3976 5.2327 14 14 10.1878 -3.0040 4.0725 15 1 10.7954 -1.8047 4.7031 16 1 10.6573 -4.2247 4.7759 17 1 10.5900 -3.0699 2.6446 18 7 2.0183 -0.6907 -1.1962 19 6 2.1471 -0.0183 -2.3572 20 8 1.8584 1.1584 -2.4117 21 6 2.6499 -0.7285 -3.5875 22 1 3.3670 -1.5297 -3.4079 23 6 2.8216 0.1011 -4.8622 24 6 1.6747 -0.9023 -4.7498 25 6 0.2544 -0.3522 -4.5802 26 6 -0.6510 -1.4871 -4.0872 27 8 -0.5386 -2.6011 -4.9748 28 6 0.7578 -3.2002 -5.0132 29 6 1.7667 -2.1910 -5.5742 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 1.7516 -0.1584 2.1370 34 1 1.6053 -1.7198 1.2951 35 1 3.9280 0.0824 1.0824 36 1 3.7557 -0.9573 3.2721 37 1 3.6094 -2.5191 2.4308 38 1 5.7755 -2.5716 4.0329 39 1 8.2103 -3.8264 5.9401 40 1 2.2490 -1.6318 -1.1526 41 1 2.5704 1.1605 -4.8109 42 1 3.6514 -0.1542 -5.5212 43 1 0.2597 0.4561 -3.8489 44 1 -0.1114 0.0186 -5.5377 45 1 -1.6852 -1.1434 -4.0640 46 1 -0.3452 -1.7880 -3.0852 47 1 0.7319 -4.0825 -5.6528 48 1 1.0552 -3.4899 -4.0055 49 1 1.5295 -1.9766 -6.6163 50 1 2.7749 -2.5992 -5.5046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699434463.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:37 Heat of formation + Delta-G solvation = -103.991147 kcal Electronic energy + Delta-G solvation = -29915.518289 eV Core-core repulsion = 25749.932203 eV Total energy + Delta-G solvation = -4165.586086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79016 -39.14810 -38.33029 -37.11392 -36.10798 -34.30114 -33.67073 -31.55131 -31.33737 -31.13672 -30.25589 -27.63548 -25.29008 -24.72134 -24.03662 -23.26890 -22.98238 -21.19561 -20.44314 -19.32511 -19.10967 -17.92436 -17.31125 -16.79595 -16.37287 -16.33445 -15.85634 -15.26347 -15.18055 -15.10967 -14.67862 -14.56155 -14.33742 -14.14106 -13.80845 -13.64517 -13.49072 -13.30950 -13.27337 -12.71288 -12.61979 -12.46310 -12.22187 -12.02341 -11.83698 -11.64928 -11.58419 -11.51499 -11.31285 -11.06930 -11.04234 -10.98449 -10.67206 -10.41932 -10.29958 -10.24936 -9.81754 -9.54159 -9.51932 -9.04652 -8.52049 -8.14368 -7.99575 -6.44979 -3.85880 2.43704 3.09892 3.15460 3.24369 3.30232 3.55008 3.58766 3.86953 4.02024 4.23563 4.29146 4.42737 4.50154 4.55819 4.69865 4.72715 4.85412 4.96621 5.03460 5.07131 5.13629 5.19850 5.22047 5.25169 5.30043 5.36204 5.40636 5.41247 5.52516 5.53686 5.56873 5.59135 5.73728 5.74760 5.82482 5.85137 5.87772 5.91560 5.96175 6.02186 6.21589 6.49637 6.91464 7.10402 7.52159 7.54070 7.56696 8.02880 8.25626 8.57704 9.14681 9.50734 10.02064 10.72757 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.002184 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.425995 B =12816.650013 C =13544.804936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.702 5.702 19 C 0.549 3.451 20 O -0.549 6.549 21 C -0.183 4.183 22 H 0.125 0.875 23 C -0.135 4.135 24 C -0.100 4.100 25 C -0.127 4.127 26 C 0.065 3.935 27 O -0.384 6.384 28 C 0.063 3.937 29 C -0.118 4.118 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.351 0.649 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.405 0.595 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.053 0.947 49 H 0.079 0.921 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 1.733 -15.347 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.352 5.352 19 C 0.336 3.664 20 O -0.427 6.427 21 C -0.204 4.204 22 H 0.143 0.857 23 C -0.172 4.172 24 C -0.101 4.101 25 C -0.165 4.165 26 C -0.012 4.012 27 O -0.303 6.303 28 C -0.014 4.014 29 C -0.156 4.156 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.170 0.830 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.113 0.887 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.965 2.144 -16.321 24.366 hybrid contribution 1.108 -0.061 1.614 1.959 sum -16.857 2.083 -14.706 22.467 Atomic orbital electron populations 1.22138 0.95034 1.02191 1.02583 1.20942 0.93530 0.97493 0.84039 0.89603 1.22315 0.89575 1.00677 0.95679 1.60075 1.03007 1.26908 1.39917 1.21682 0.95338 0.99846 0.91365 1.19798 0.87995 0.84628 0.85050 1.90531 1.71104 1.51863 1.33167 1.41867 1.07417 1.50903 1.19832 1.19699 0.81498 1.35173 1.06527 0.87944 1.25265 1.00723 0.96737 0.95218 1.69609 1.36721 1.38603 1.09390 0.85856 0.82159 0.77659 0.78619 1.20406 1.20896 1.19390 1.45754 1.66398 1.14346 1.08716 1.19483 0.76743 0.86501 0.83695 1.90661 1.51019 1.15893 1.85169 1.22441 1.04377 1.04453 0.89155 0.85744 1.23046 0.99317 0.98097 0.96752 1.21429 0.92092 0.98113 0.98431 1.21937 0.92378 0.98891 1.03259 1.22583 0.99988 0.86059 0.92551 1.87860 1.30773 1.46571 1.65069 1.22595 0.82947 0.95100 1.00786 1.21863 1.00429 0.93664 0.99633 0.92325 0.91972 0.91584 0.93897 0.90476 0.82971 0.93840 0.89606 0.77477 0.91851 0.75966 0.87326 0.87870 0.89331 0.90402 0.88903 0.93129 0.88722 0.92913 0.90195 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.15 1.55 2.81 -67.92 -0.19 1.36 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.52 5.24 -3.82 -0.02 0.50 16 5 N -0.67 -9.97 5.85 -115.05 -0.67 -10.64 16 6 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 7 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16 8 O -0.58 -15.59 15.78 5.55 0.09 -15.50 16 9 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16 14 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 N -0.70 -7.77 4.80 -53.80 -0.26 -8.03 16 19 C 0.55 6.85 6.52 -10.99 -0.07 6.78 16 20 O -0.55 -8.43 14.65 5.55 0.08 -8.35 16 21 C -0.18 -1.90 5.88 -91.89 -0.54 -2.44 16 22 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 23 C -0.13 -1.31 9.52 -26.80 -0.26 -1.56 16 24 C -0.10 -0.89 2.03 -154.49 -0.31 -1.21 16 25 C -0.13 -1.17 5.59 -26.43 -0.15 -1.32 16 26 C 0.06 0.57 6.85 37.33 0.26 0.82 16 27 O -0.38 -3.76 10.69 -35.23 -0.38 -4.14 16 28 C 0.06 0.48 6.85 37.33 0.26 0.74 16 29 C -0.12 -0.88 5.92 -26.43 -0.16 -1.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 36 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.41 4.17 8.60 -40.82 -0.35 3.82 16 41 H 0.11 1.19 7.67 -51.93 -0.40 0.79 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.96 5.95 -51.93 -0.31 0.66 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 50 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 408.64 15.07 6.16 6.16 Total: -1.00 -32.63 408.64 -8.91 -41.54 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -8.38 Total: 16.28 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.19 Total: 4.52 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.27 Total: -56.40 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.21 Total: -27.99 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.63 -8.91 -41.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699434463.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.454 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds