Wall clock time and date at job start Tue Mar 31 2020 23:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47446 * 2 1 4 4 C 1.53003 * 109.46824 * 120.00404 * 2 1 3 5 5 N 1.46904 * 109.46955 * 174.99785 * 4 2 1 6 6 C 1.46901 * 110.99799 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.46675 * 180.02562 * 6 5 4 8 8 O 1.21289 * 120.00367 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99480 * 180.02562 * 7 6 5 10 10 C 1.37102 * 119.99893 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99479 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00133 * 179.97438 * 10 9 7 13 13 N 1.31414 * 119.99865 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99854 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47000 * 90.00421 * 14 12 10 16 16 H 1.48499 * 109.46897 * 209.99923 * 14 12 10 17 17 H 1.48497 * 109.47475 * 330.00261 * 14 12 10 18 18 N 1.46508 * 109.46911 * 239.99796 * 2 1 3 19 19 C 1.34777 * 119.99862 * 85.00729 * 18 2 1 20 20 O 1.21285 * 119.99765 * 359.97438 * 19 18 2 21 21 C 1.50693 * 120.00196 * 179.97438 * 19 18 2 22 22 H 1.09006 * 115.55198 * 327.83508 * 21 19 18 23 23 C 1.53061 * 117.51080 * 182.12941 * 21 19 18 24 24 C 1.52720 * 117.51292 * 113.54290 * 21 19 18 25 25 C 1.53252 * 117.82228 * 359.59925 * 24 21 19 26 26 C 1.53330 * 108.48928 * 265.30839 * 25 24 21 27 27 O 1.42875 * 109.32377 * 306.03751 * 26 25 24 28 28 C 1.42864 * 114.52686 * 64.36118 * 27 26 25 29 29 C 1.53253 * 117.82584 * 215.33547 * 24 21 19 30 30 H 1.08997 * 109.46979 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47163 * 60.00192 * 1 2 3 32 32 H 1.08992 * 109.47164 * 300.00376 * 1 2 3 33 33 H 1.09005 * 109.46872 * 294.99303 * 4 2 1 34 34 H 1.08992 * 109.47290 * 54.99931 * 4 2 1 35 35 H 1.00906 * 110.99700 * 56.04240 * 5 4 2 36 36 H 1.09007 * 109.47248 * 300.00026 * 6 5 4 37 37 H 1.08996 * 109.46935 * 60.00133 * 6 5 4 38 38 H 0.96994 * 120.00272 * 0.02562 * 9 7 6 39 39 H 0.96993 * 119.99828 * 179.97438 * 13 12 10 40 40 H 0.96996 * 119.99979 * 264.99594 * 18 2 1 41 41 H 1.09003 * 117.50191 * 359.97438 * 23 21 19 42 42 H 1.08995 * 117.51027 * 145.03283 * 23 21 19 43 43 H 1.09002 * 109.63249 * 25.00434 * 25 24 21 44 44 H 1.08994 * 109.63171 * 145.60527 * 25 24 21 45 45 H 1.09007 * 109.49565 * 186.08234 * 26 25 24 46 46 H 1.08997 * 109.52362 * 66.01092 * 26 25 24 47 47 H 1.08999 * 109.49512 * 175.68681 * 28 27 26 48 48 H 1.08993 * 109.52334 * 55.60738 * 28 27 26 49 49 H 1.09007 * 109.62484 * 214.38866 * 29 24 21 50 50 H 1.08993 * 109.63616 * 334.78338 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5040 -0.8268 1.1904 6 6 4.0303 -1.5151 2.3767 7 6 5.5317 -1.6036 2.2812 8 8 6.1067 -1.1395 1.3194 9 7 6.2354 -2.1995 3.2642 10 6 7.6012 -2.2805 3.1772 11 1 8.1132 -1.8665 2.3211 12 6 8.3268 -2.8943 4.1908 13 7 7.7038 -3.3976 5.2327 14 14 10.1878 -3.0040 4.0725 15 1 10.7954 -1.8047 4.7031 16 1 10.6573 -4.2247 4.7759 17 1 10.5900 -3.0699 2.6446 18 7 2.0183 -0.6907 -1.1962 19 6 2.1471 -0.0183 -2.3572 20 8 1.8584 1.1584 -2.4117 21 6 2.6499 -0.7285 -3.5875 22 1 3.3670 -1.5297 -3.4079 23 6 2.8216 0.1011 -4.8622 24 6 1.6747 -0.9023 -4.7498 25 6 0.2544 -0.3522 -4.5802 26 6 -0.6510 -1.4871 -4.0872 27 8 -0.5386 -2.6011 -4.9748 28 6 0.7578 -3.2002 -5.0132 29 6 1.7667 -2.1910 -5.5742 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 1.7516 -0.1584 2.1370 34 1 1.6053 -1.7198 1.2951 35 1 3.9280 0.0824 1.0824 36 1 3.7557 -0.9573 3.2721 37 1 3.6094 -2.5191 2.4308 38 1 5.7755 -2.5716 4.0329 39 1 8.2103 -3.8264 5.9401 40 1 2.2490 -1.6318 -1.1526 41 1 2.5704 1.1605 -4.8109 42 1 3.6514 -0.1542 -5.5212 43 1 0.2597 0.4561 -3.8489 44 1 -0.1114 0.0186 -5.5377 45 1 -1.6852 -1.1434 -4.0640 46 1 -0.3452 -1.7880 -3.0852 47 1 0.7319 -4.0825 -5.6528 48 1 1.0552 -3.4899 -4.0055 49 1 1.5295 -1.9766 -6.6163 50 1 2.7749 -2.5992 -5.5046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699434463.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:36 Heat of formation + Delta-G solvation = -128.700229 kcal Electronic energy + Delta-G solvation = -29916.589755 eV Core-core repulsion = 25749.932203 eV Total energy + Delta-G solvation = -4166.657552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62647 -40.21855 -39.86304 -38.06158 -37.05730 -36.02323 -35.08938 -33.26467 -32.19994 -32.13139 -30.99427 -28.96648 -26.74974 -25.79042 -24.71167 -24.50147 -23.71992 -22.08039 -21.34931 -21.03830 -19.97554 -19.86626 -18.22819 -17.97956 -17.41728 -17.08944 -16.99986 -16.56245 -16.33608 -16.12454 -15.90115 -15.85709 -15.53279 -15.24696 -14.98864 -14.82351 -14.56834 -14.29346 -14.05640 -14.02475 -13.54740 -13.40756 -13.31246 -13.09051 -13.00313 -12.98511 -12.80073 -12.71595 -12.42516 -12.29332 -12.13091 -12.07108 -11.86064 -11.72551 -11.51370 -11.36966 -11.07911 -10.75226 -10.36212 -10.24019 -10.01925 -9.96803 -9.36169 -8.47552 -5.96028 1.37135 1.41258 1.51475 1.53685 2.05551 2.22610 2.28580 2.76105 2.89298 2.94298 3.20058 3.48862 3.55768 3.68428 3.76015 3.81123 3.84196 4.05157 4.10631 4.16694 4.25528 4.32460 4.37885 4.48636 4.49879 4.51825 4.58553 4.63233 4.64577 4.74251 4.75163 4.77054 4.80493 4.83040 4.91559 5.02860 5.07279 5.10059 5.19101 5.24579 5.28087 5.40250 5.59702 5.86266 6.08214 6.26776 6.29719 6.59764 6.64133 7.12409 7.32320 7.56338 8.11899 8.69819 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.002184 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.425995 B =12816.650013 C =13544.804936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.061 0.939 4 C 0.054 3.946 5 N -0.678 5.678 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.273 1.273 18 N -0.697 5.697 19 C 0.544 3.456 20 O -0.585 6.585 21 C -0.193 4.193 22 H 0.134 0.866 23 C -0.140 4.140 24 C -0.087 4.087 25 C -0.125 4.125 26 C 0.068 3.932 27 O -0.399 6.399 28 C 0.057 3.943 29 C -0.114 4.114 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.339 0.661 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.411 0.589 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.049 0.951 47 H 0.112 0.888 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.860 0.335 -15.188 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.309 5.309 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.198 1.198 18 N -0.346 5.346 19 C 0.332 3.668 20 O -0.466 6.466 21 C -0.214 4.214 22 H 0.151 0.849 23 C -0.177 4.177 24 C -0.088 4.088 25 C -0.163 4.163 26 C -0.009 4.009 27 O -0.318 6.318 28 C -0.019 4.019 29 C -0.151 4.151 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.157 0.843 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.247 0.753 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.120 0.880 46 H 0.068 0.932 47 H 0.130 0.870 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.781 0.715 -16.133 24.770 hybrid contribution 1.305 0.412 1.546 2.065 sum -17.477 1.128 -14.587 22.792 Atomic orbital electron populations 1.22050 0.93140 1.03188 1.02613 1.20952 0.94876 0.96151 0.83925 0.92081 1.22379 0.86842 1.02094 0.96170 1.60081 1.05339 1.26200 1.39307 1.21546 0.90289 1.01835 0.92967 1.20942 0.90682 0.82412 0.83515 1.90503 1.72859 1.53077 1.34625 1.41934 1.06813 1.51717 1.20623 1.19637 0.83136 1.36886 1.06604 0.90493 1.26011 1.04800 0.95844 0.94567 1.69663 1.38233 1.38529 1.09662 0.84957 0.77023 0.78191 0.78362 1.19750 1.19466 1.19810 1.45770 1.65798 1.14493 1.08549 1.19855 0.76255 0.86175 0.84553 1.90640 1.52735 1.17462 1.85774 1.22474 1.05438 1.04830 0.88659 0.84862 1.23087 1.00516 0.97327 0.96786 1.21494 0.91451 0.98511 0.97307 1.21889 0.92950 0.98642 1.02806 1.22583 1.00383 0.85645 0.92298 1.87844 1.31955 1.46719 1.65255 1.22768 0.82187 0.95568 1.01387 1.21885 1.01211 0.92588 0.99448 0.90765 0.93403 0.90117 0.92207 0.88464 0.84333 0.91597 0.87183 0.76933 0.91295 0.75345 0.89130 0.86109 0.91263 0.90144 0.87965 0.93249 0.87045 0.92720 0.89622 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.48 71.98 0.68 -1.72 16 2 C 0.15 3.00 2.81 44.99 0.13 3.12 16 3 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 4 C 0.05 1.05 5.24 86.30 0.45 1.50 16 5 N -0.68 -19.36 5.85 -517.91 -3.03 -22.39 16 6 C 0.07 2.07 6.17 85.56 0.53 2.60 16 7 C 0.44 20.14 7.82 87.66 0.69 20.82 16 8 O -0.62 -34.06 15.78 -3.06 -0.05 -34.11 16 9 N -0.57 -28.79 5.29 -306.98 -1.62 -30.42 16 10 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 11 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 14 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 N -0.70 -15.09 4.80 -442.52 -2.12 -17.21 16 19 C 0.54 13.78 6.52 87.65 0.57 14.36 16 20 O -0.58 -18.75 14.65 -3.04 -0.04 -18.80 16 21 C -0.19 -3.95 5.88 -11.61 -0.07 -4.02 16 22 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 23 C -0.14 -2.70 9.52 30.55 0.29 -2.41 16 24 C -0.09 -1.49 2.03 -52.17 -0.11 -1.60 16 25 C -0.13 -2.29 5.59 30.79 0.17 -2.12 16 26 C 0.07 1.12 6.85 72.09 0.49 1.61 16 27 O -0.40 -7.20 10.69 -148.98 -1.59 -8.79 16 28 C 0.06 0.77 6.85 72.09 0.49 1.27 16 29 C -0.11 -1.48 5.92 30.79 0.18 -1.30 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.34 11.15 8.43 -89.69 -0.76 10.39 16 36 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.40 18.81 7.90 -92.71 -0.73 18.07 16 39 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 40 H 0.41 7.98 8.60 -92.71 -0.80 7.19 16 41 H 0.09 2.09 7.67 -2.39 -0.02 2.07 16 42 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 1.56 5.95 -2.39 -0.01 1.55 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 Total: -1.00 -71.81 408.64 -1.69 -73.49 By element: Atomic # 1 Polarization: 49.65 SS G_CDS: -1.32 Total: 48.33 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.79 Total: 14.01 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.49 Total: -118.76 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -1.69 Total: -61.70 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.81 -1.69 -73.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699434463.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.206 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds