Wall clock time and date at job start Tue Mar 31 2020 23:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46837 * 2 1 4 4 C 1.52997 * 109.47576 * 240.00148 * 2 1 3 5 5 C 1.50697 * 109.47452 * 64.99486 * 4 2 1 6 6 N 1.34770 * 120.00255 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99579 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.47015 * 119.99709 * 2 1 3 9 9 O 1.21286 * 120.00193 * 32.15184 * 8 2 1 10 10 N 1.34778 * 119.99793 * 212.15014 * 8 2 1 11 11 C 1.47151 * 120.99183 * 354.47993 * 10 8 2 12 12 C 1.53302 * 108.37207 * 230.59934 * 11 10 8 13 13 O 1.42961 * 109.23077 * 307.64869 * 12 11 10 14 14 C 1.42899 * 114.21183 * 62.48429 * 13 12 11 15 15 C 1.52988 * 109.56006 * 57.48468 * 14 13 12 16 16 C 1.53191 * 109.35466 * 59.05001 * 15 14 13 17 17 N 1.46930 * 108.77517 * 54.57687 * 16 15 14 18 18 C 1.36932 * 120.65068 * 126.29912 * 17 16 15 19 19 H 1.08000 * 119.99483 * 331.33973 * 18 17 16 20 20 C 1.38811 * 120.00447 * 151.34144 * 18 17 16 21 21 N 1.31618 * 120.00471 * 144.60912 * 20 18 17 22 22 Si 1.86805 * 119.99765 * 324.60883 * 20 18 17 23 23 H 1.48502 * 109.46834 * 270.00008 * 22 20 18 24 24 H 1.48501 * 109.47259 * 30.00034 * 22 20 18 25 25 H 1.48496 * 109.47155 * 150.00021 * 22 20 18 26 26 C 1.46943 * 118.70663 * 306.56674 * 17 16 15 27 27 C 1.52763 * 108.99876 * 53.39197 * 26 17 16 28 28 C 1.47157 * 120.98448 * 174.47989 * 10 8 2 29 29 H 1.08999 * 109.47367 * 298.54332 * 1 2 3 30 30 H 1.09001 * 109.47091 * 58.55123 * 1 2 3 31 31 H 1.09008 * 109.47063 * 178.54539 * 1 2 3 32 32 H 1.08993 * 109.47294 * 185.00164 * 4 2 1 33 33 H 1.09000 * 109.46963 * 304.99926 * 4 2 1 34 34 H 0.96999 * 120.00257 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99796 * 180.02562 * 6 5 4 36 36 H 1.08992 * 109.68570 * 110.87731 * 11 10 8 37 37 H 1.09001 * 109.68375 * 350.31221 * 11 10 8 38 38 H 1.08997 * 109.50774 * 187.72637 * 12 11 10 39 39 H 1.08997 * 109.50974 * 67.57899 * 12 11 10 40 40 H 1.09007 * 109.49008 * 299.08584 * 15 14 13 41 41 H 1.09000 * 109.51195 * 179.03437 * 15 14 13 42 42 H 1.08997 * 109.58757 * 294.78094 * 16 15 14 43 43 H 1.09003 * 109.69905 * 174.42438 * 16 15 14 44 44 H 0.97007 * 119.99239 * 354.91265 * 21 20 18 45 45 H 1.08999 * 109.58261 * 173.22662 * 26 17 16 46 46 H 1.08994 * 109.58734 * 293.65241 * 26 17 16 47 47 H 1.08999 * 109.55537 * 185.58929 * 27 26 17 48 48 H 1.08999 * 109.37410 * 65.57019 * 27 26 17 49 49 H 1.08992 * 109.67933 * 9.78689 * 28 10 8 50 50 H 1.09001 * 109.67855 * 249.24632 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 7 1.9846 -0.3919 -3.7001 7 8 1.0116 1.0873 -2.3632 8 6 2.0323 -0.7103 1.2305 9 8 1.3960 -1.6285 1.7029 10 7 3.1886 -0.3254 1.8060 11 6 4.0382 0.7033 1.1852 12 6 5.4707 0.1631 1.1051 13 8 5.8735 -0.2968 2.3974 14 6 5.0913 -1.3801 2.9040 15 6 5.1424 -2.5519 1.9217 16 6 6.5974 -2.9917 1.7312 17 7 7.1800 -3.2820 3.0485 18 6 7.7797 -4.4878 3.2962 19 1 7.4578 -5.3705 2.7635 20 6 8.8012 -4.5758 4.2319 21 7 8.9169 -5.6520 4.9808 22 14 10.0119 -3.1668 4.4282 23 1 11.1654 -3.3748 3.5164 24 1 9.3397 -1.8861 4.0919 25 1 10.4930 -3.1196 5.8323 26 6 7.1013 -2.2553 4.0968 27 6 5.6457 -1.8216 4.2599 28 6 3.6390 -0.9213 3.0739 29 1 -0.3634 0.4910 0.9027 30 1 -0.3633 0.5362 -0.8767 31 1 -0.3633 -1.0274 -0.0261 32 1 3.1263 -0.7994 -1.2055 33 1 1.6055 -1.7197 -1.2951 34 1 2.4879 -1.2161 -3.7908 35 1 1.7282 0.1092 -4.4901 36 1 4.0207 1.6088 1.7915 37 1 3.6729 0.9251 0.1824 38 1 6.1412 0.9568 0.7759 39 1 5.5087 -0.6640 0.3962 40 1 4.7279 -2.2409 0.9627 41 1 4.5596 -3.3839 2.3169 42 1 7.1609 -2.1921 1.2505 43 1 6.6323 -3.8874 1.1109 44 1 8.2464 -6.3514 4.9316 45 1 7.4667 -2.6656 5.0381 46 1 7.7064 -1.3947 3.8115 47 1 5.5891 -0.9912 4.9637 48 1 5.0590 -2.6591 4.6375 49 1 3.0104 -1.7766 3.3211 50 1 3.5794 -0.1791 3.8699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700331334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:02 Heat of formation + Delta-G solvation = -89.092350 kcal Electronic energy + Delta-G solvation = -31984.320037 eV Core-core repulsion = 27819.380012 eV Total energy + Delta-G solvation = -4164.940025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.04821 -40.00717 -38.91192 -36.46267 -34.77989 -34.42936 -34.12391 -33.04521 -31.41128 -30.35104 -28.99510 -28.26900 -27.30876 -24.46495 -23.77179 -23.19102 -22.37020 -21.12715 -20.64561 -19.27524 -18.84656 -18.07966 -17.64400 -17.39760 -16.89420 -16.12693 -15.76626 -15.69145 -15.50875 -15.05529 -14.94946 -14.29700 -14.22903 -14.14372 -13.87172 -13.68448 -13.48049 -13.40229 -13.26024 -12.85608 -12.40338 -12.20028 -12.05821 -11.98661 -11.88165 -11.60999 -11.55410 -11.36863 -11.28020 -10.80373 -10.62450 -10.46434 -10.43953 -10.35210 -10.13143 -9.97442 -9.73001 -9.60655 -9.56813 -9.17232 -8.54657 -8.24521 -6.93904 -6.33095 -3.23000 2.18706 2.36388 2.69868 3.15592 3.55666 3.60941 3.76557 3.82207 4.15282 4.34744 4.46303 4.62551 4.66003 4.69271 4.76008 4.95429 4.96898 4.98770 5.05369 5.13702 5.18521 5.21875 5.29722 5.44306 5.53561 5.55553 5.65860 5.67818 5.77857 5.81799 5.87109 6.05006 6.09812 6.14601 6.18786 6.26390 6.33331 6.35950 6.43585 6.60298 6.77811 6.81008 6.84464 7.06285 7.19929 7.38757 7.80545 7.99693 8.10126 8.49471 9.06624 9.68686 10.29271 11.06991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.003004 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.250879 B = 9317.571192 C = 9556.268585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.099 0.901 4 C -0.136 4.136 5 C 0.522 3.478 6 N -0.856 5.856 7 O -0.538 6.538 8 C 0.519 3.481 9 O -0.534 6.534 10 N -0.610 5.610 11 C 0.070 3.930 12 C 0.044 3.956 13 O -0.359 6.359 14 C 0.118 3.882 15 C -0.151 4.151 16 C 0.152 3.848 17 N -0.598 5.598 18 C -0.361 4.361 19 H 0.061 0.939 20 C 0.004 3.996 21 N -0.900 5.900 22 Si 1.014 2.986 23 H -0.299 1.299 24 H -0.265 1.265 25 H -0.295 1.295 26 C 0.150 3.850 27 C -0.123 4.123 28 C 0.088 3.912 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.403 0.597 35 H 0.402 0.598 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.021 0.979 43 H 0.054 0.946 44 H 0.266 0.734 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.100 0.900 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 14.215 -14.636 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.118 0.882 4 C -0.177 4.177 5 C 0.307 3.693 6 N -0.419 5.419 7 O -0.415 6.415 8 C 0.307 3.693 9 O -0.410 6.410 10 N -0.344 5.344 11 C -0.053 4.053 12 C -0.034 4.034 13 O -0.277 6.277 14 C 0.078 3.922 15 C -0.190 4.190 16 C 0.025 3.975 17 N -0.322 5.322 18 C -0.488 4.488 19 H 0.079 0.921 20 C -0.200 4.200 21 N -0.537 5.537 22 Si 0.843 3.157 23 H -0.227 1.227 24 H -0.191 1.191 25 H -0.221 1.221 26 C 0.024 3.976 27 C -0.163 4.163 28 C -0.034 4.034 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.232 0.768 35 H 0.233 0.767 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.118 0.882 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.765 14.853 -13.196 23.615 hybrid contribution -1.298 -0.766 -1.463 2.100 sum -14.063 14.087 -14.659 24.720 Atomic orbital electron populations 1.21780 0.91771 1.02982 1.03201 1.21060 0.99043 1.00356 0.90994 0.88248 1.21641 1.03355 1.00947 0.91744 1.20495 0.78441 0.85260 0.85109 1.43888 1.60167 1.29630 1.08265 1.90736 1.39550 1.24526 1.86662 1.20611 0.80097 0.83381 0.85231 1.90703 1.56639 1.29011 1.64614 1.48169 1.21436 1.40442 1.24369 1.22550 0.92007 0.91494 0.99297 1.22912 0.93750 0.99374 0.87348 1.88051 1.56550 1.50910 1.32192 1.21737 0.88301 0.86309 0.95874 1.22490 1.00832 0.97721 0.97998 1.20815 0.90147 0.97690 0.88813 1.44288 1.66490 1.15373 1.06008 1.20028 1.17136 0.85219 1.26464 0.92085 1.26141 0.97870 1.01734 0.94217 1.70896 1.39071 1.10539 1.33226 0.84661 0.77633 0.77686 0.75704 1.22678 1.19118 1.22122 1.21217 0.91942 0.91808 0.92655 1.22024 1.01080 1.00296 0.92860 1.22458 0.96455 0.99652 0.84860 0.92451 0.90047 0.91902 0.88320 0.87626 0.76807 0.76702 0.90397 0.89103 0.87972 0.92282 0.92978 0.91193 0.96066 0.92762 0.92386 0.91737 0.94279 0.91882 0.90537 0.88218 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.51 37.16 0.32 -1.12 16 2 C -0.09 -0.89 1.54 -91.78 -0.14 -1.03 16 3 H 0.10 0.89 6.25 -51.93 -0.32 0.57 16 4 C -0.14 -1.01 4.98 -27.89 -0.14 -1.15 16 5 C 0.52 4.03 7.83 -10.99 -0.09 3.94 16 6 N -0.86 -3.69 8.87 31.22 0.28 -3.41 16 7 O -0.54 -6.08 14.80 5.55 0.08 -6.00 16 8 C 0.52 6.50 6.73 -10.99 -0.07 6.43 16 9 O -0.53 -8.65 15.72 5.55 0.09 -8.56 16 10 N -0.61 -7.28 2.52 -172.30 -0.43 -7.72 16 11 C 0.07 0.64 6.31 -3.53 -0.02 0.62 16 12 C 0.04 0.48 6.60 37.31 0.25 0.72 16 13 O -0.36 -5.44 9.01 -35.23 -0.32 -5.76 16 14 C 0.12 1.84 0.68 -90.50 -0.06 1.78 16 15 C -0.15 -2.53 4.33 -26.64 -0.12 -2.64 16 16 C 0.15 3.03 6.29 -3.71 -0.02 3.01 16 17 N -0.60 -14.24 2.70 -172.57 -0.47 -14.70 16 18 C -0.36 -10.06 9.70 -15.06 -0.15 -10.21 16 19 H 0.06 1.83 8.06 -52.49 -0.42 1.41 16 20 C 0.00 0.13 4.83 -17.43 -0.08 0.04 16 21 N -0.90 -27.55 13.70 55.49 0.76 -26.79 16 22 Si 1.01 25.26 27.02 -169.99 -4.59 20.66 16 23 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.27 -6.12 4.71 56.52 0.27 -5.85 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 C 0.15 3.25 4.11 -3.92 -0.02 3.24 16 27 C -0.12 -2.17 5.09 -26.86 -0.14 -2.31 16 28 C 0.09 1.22 5.31 -3.55 -0.02 1.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.85 5.98 -51.93 -0.31 0.54 16 31 H 0.06 0.68 7.90 -51.92 -0.41 0.27 16 32 H 0.10 0.59 7.82 -51.93 -0.41 0.19 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 0.77 8.83 -40.82 -0.36 0.41 16 35 H 0.40 1.41 8.93 -40.82 -0.36 1.05 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.63 5.39 -51.93 -0.28 0.35 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.65 6.29 -51.93 -0.33 0.32 16 40 H 0.05 0.76 6.16 -51.93 -0.32 0.44 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.02 0.42 7.83 -51.93 -0.41 0.01 16 43 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 44 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 45 H 0.06 1.52 5.88 -51.93 -0.31 1.21 16 46 H 0.04 0.87 6.26 -51.93 -0.33 0.54 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.10 1.53 7.06 -51.93 -0.37 1.17 16 50 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -35.51 376.51 -7.44 -42.95 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.01 Total: 1.13 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -0.50 Total: 2.53 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.14 Total: -52.62 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.15 Total: -20.32 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.59 Total: 20.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.51 -7.44 -42.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.138 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds