Wall clock time and date at job start Tue Mar 31 2020 23:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46837 * 2 1 4 4 C 1.52997 * 109.47576 * 240.00148 * 2 1 3 5 5 C 1.50697 * 109.47452 * 64.99486 * 4 2 1 6 6 N 1.34770 * 120.00255 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99579 * 0.02562 * 5 4 2 8 8 C 1.50699 * 109.47015 * 119.99709 * 2 1 3 9 9 O 1.21286 * 120.00193 * 32.15184 * 8 2 1 10 10 N 1.34778 * 119.99793 * 212.15014 * 8 2 1 11 11 C 1.47151 * 120.99183 * 354.47993 * 10 8 2 12 12 C 1.53302 * 108.37207 * 230.59934 * 11 10 8 13 13 O 1.42961 * 109.23077 * 307.64869 * 12 11 10 14 14 C 1.42899 * 114.21183 * 62.48429 * 13 12 11 15 15 C 1.52988 * 109.56006 * 57.48468 * 14 13 12 16 16 C 1.53191 * 109.35466 * 59.05001 * 15 14 13 17 17 N 1.46930 * 108.77517 * 54.57687 * 16 15 14 18 18 C 1.36932 * 120.65068 * 126.29912 * 17 16 15 19 19 H 1.08000 * 119.99483 * 331.33973 * 18 17 16 20 20 C 1.38811 * 120.00447 * 151.34144 * 18 17 16 21 21 N 1.31618 * 120.00471 * 144.60912 * 20 18 17 22 22 Si 1.86805 * 119.99765 * 324.60883 * 20 18 17 23 23 H 1.48502 * 109.46834 * 270.00008 * 22 20 18 24 24 H 1.48501 * 109.47259 * 30.00034 * 22 20 18 25 25 H 1.48496 * 109.47155 * 150.00021 * 22 20 18 26 26 C 1.46943 * 118.70663 * 306.56674 * 17 16 15 27 27 C 1.52763 * 108.99876 * 53.39197 * 26 17 16 28 28 C 1.47157 * 120.98448 * 174.47989 * 10 8 2 29 29 H 1.08999 * 109.47367 * 298.54332 * 1 2 3 30 30 H 1.09001 * 109.47091 * 58.55123 * 1 2 3 31 31 H 1.09008 * 109.47063 * 178.54539 * 1 2 3 32 32 H 1.08993 * 109.47294 * 185.00164 * 4 2 1 33 33 H 1.09000 * 109.46963 * 304.99926 * 4 2 1 34 34 H 0.96999 * 120.00257 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99796 * 180.02562 * 6 5 4 36 36 H 1.08992 * 109.68570 * 110.87731 * 11 10 8 37 37 H 1.09001 * 109.68375 * 350.31221 * 11 10 8 38 38 H 1.08997 * 109.50774 * 187.72637 * 12 11 10 39 39 H 1.08997 * 109.50974 * 67.57899 * 12 11 10 40 40 H 1.09007 * 109.49008 * 299.08584 * 15 14 13 41 41 H 1.09000 * 109.51195 * 179.03437 * 15 14 13 42 42 H 1.08997 * 109.58757 * 294.78094 * 16 15 14 43 43 H 1.09003 * 109.69905 * 174.42438 * 16 15 14 44 44 H 0.97007 * 119.99239 * 354.91265 * 21 20 18 45 45 H 1.08999 * 109.58261 * 173.22662 * 26 17 16 46 46 H 1.08994 * 109.58734 * 293.65241 * 26 17 16 47 47 H 1.08999 * 109.55537 * 185.58929 * 27 26 17 48 48 H 1.08999 * 109.37410 * 65.57019 * 27 26 17 49 49 H 1.08992 * 109.67933 * 9.78689 * 28 10 8 50 50 H 1.09001 * 109.67855 * 249.24632 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4766 6 7 1.9846 -0.3919 -3.7001 7 8 1.0116 1.0873 -2.3632 8 6 2.0323 -0.7103 1.2305 9 8 1.3960 -1.6285 1.7029 10 7 3.1886 -0.3254 1.8060 11 6 4.0382 0.7033 1.1852 12 6 5.4707 0.1631 1.1051 13 8 5.8735 -0.2968 2.3974 14 6 5.0913 -1.3801 2.9040 15 6 5.1424 -2.5519 1.9217 16 6 6.5974 -2.9917 1.7312 17 7 7.1800 -3.2820 3.0485 18 6 7.7797 -4.4878 3.2962 19 1 7.4578 -5.3705 2.7635 20 6 8.8012 -4.5758 4.2319 21 7 8.9169 -5.6520 4.9808 22 14 10.0119 -3.1668 4.4282 23 1 11.1654 -3.3748 3.5164 24 1 9.3397 -1.8861 4.0919 25 1 10.4930 -3.1196 5.8323 26 6 7.1013 -2.2553 4.0968 27 6 5.6457 -1.8216 4.2599 28 6 3.6390 -0.9213 3.0739 29 1 -0.3634 0.4910 0.9027 30 1 -0.3633 0.5362 -0.8767 31 1 -0.3633 -1.0274 -0.0261 32 1 3.1263 -0.7994 -1.2055 33 1 1.6055 -1.7197 -1.2951 34 1 2.4879 -1.2161 -3.7908 35 1 1.7282 0.1092 -4.4901 36 1 4.0207 1.6088 1.7915 37 1 3.6729 0.9251 0.1824 38 1 6.1412 0.9568 0.7759 39 1 5.5087 -0.6640 0.3962 40 1 4.7279 -2.2409 0.9627 41 1 4.5596 -3.3839 2.3169 42 1 7.1609 -2.1921 1.2505 43 1 6.6323 -3.8874 1.1109 44 1 8.2464 -6.3514 4.9316 45 1 7.4667 -2.6656 5.0381 46 1 7.7064 -1.3947 3.8115 47 1 5.5891 -0.9912 4.9637 48 1 5.0590 -2.6591 4.6375 49 1 3.0104 -1.7766 3.3211 50 1 3.5794 -0.1791 3.8699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700331334.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:01 Heat of formation + Delta-G solvation = -116.633911 kcal Electronic energy + Delta-G solvation = -31985.514329 eV Core-core repulsion = 27819.380012 eV Total energy + Delta-G solvation = -4166.134317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.04194 -40.81820 -39.92693 -37.96291 -35.86268 -35.26082 -34.71375 -34.62635 -33.09872 -31.94526 -30.14294 -28.93783 -28.56210 -25.93369 -24.87488 -24.47186 -23.77477 -22.46667 -21.46658 -20.64423 -19.74451 -19.42887 -18.80274 -18.16373 -17.64509 -17.19397 -17.01538 -16.58987 -16.39829 -16.18673 -16.10850 -15.80183 -15.73869 -15.25707 -15.04329 -14.99139 -14.77194 -14.44605 -14.26074 -13.96325 -13.78280 -13.53088 -13.34665 -13.17013 -13.09829 -12.82727 -12.76413 -12.42718 -12.27221 -12.18084 -12.06364 -11.93296 -11.73429 -11.56008 -11.42964 -11.18659 -11.08086 -10.84382 -10.69914 -10.55615 -10.40951 -9.55997 -8.97871 -8.56334 -5.43051 1.44521 1.55527 1.58066 1.62765 1.77874 1.79939 2.61754 2.62920 2.75790 2.98760 3.38238 3.46529 3.64424 3.67467 3.75821 3.79463 3.85253 3.98879 4.12770 4.16931 4.28052 4.32637 4.35557 4.44292 4.55728 4.57264 4.59940 4.64731 4.65344 4.73089 4.80493 4.85279 4.90854 4.93137 4.98239 5.03495 5.07451 5.09013 5.21173 5.24153 5.32354 5.46438 5.85062 5.93633 6.27069 6.29261 6.30897 6.45791 6.92942 7.04480 7.35489 7.65513 8.17320 8.80115 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.003004 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.250879 B = 9317.571192 C = 9556.268585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.113 0.887 4 C -0.134 4.134 5 C 0.524 3.476 6 N -0.838 5.838 7 O -0.577 6.577 8 C 0.519 3.481 9 O -0.577 6.577 10 N -0.609 5.609 11 C 0.071 3.929 12 C 0.036 3.964 13 O -0.375 6.375 14 C 0.128 3.872 15 C -0.139 4.139 16 C 0.151 3.849 17 N -0.613 5.613 18 C -0.350 4.350 19 H 0.025 0.975 20 C -0.047 4.047 21 N -0.937 5.937 22 Si 1.063 2.937 23 H -0.296 1.296 24 H -0.235 1.235 25 H -0.299 1.299 26 C 0.148 3.852 27 C -0.120 4.120 28 C 0.096 3.904 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.417 0.583 35 H 0.409 0.591 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.041 0.959 46 H 0.045 0.955 47 H 0.089 0.911 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.572 17.530 -16.572 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.131 0.869 4 C -0.174 4.174 5 C 0.309 3.691 6 N -0.402 5.402 7 O -0.457 6.457 8 C 0.309 3.691 9 O -0.456 6.456 10 N -0.342 5.342 11 C -0.051 4.051 12 C -0.041 4.041 13 O -0.294 6.294 14 C 0.087 3.913 15 C -0.178 4.178 16 C 0.026 3.974 17 N -0.338 5.338 18 C -0.479 4.479 19 H 0.042 0.958 20 C -0.245 4.245 21 N -0.577 5.577 22 Si 0.888 3.112 23 H -0.224 1.224 24 H -0.159 1.159 25 H -0.226 1.226 26 C 0.023 3.977 27 C -0.159 4.159 28 C -0.028 4.028 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.248 0.752 35 H 0.240 0.760 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.107 0.893 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.794 18.192 -15.201 26.939 hybrid contribution -1.346 -1.837 -0.968 2.475 sum -14.140 16.354 -16.170 26.997 Atomic orbital electron populations 1.21719 0.92556 1.02212 1.02832 1.21026 0.98339 1.00863 0.90494 0.86900 1.21631 1.04561 1.00615 0.90573 1.20484 0.78022 0.84687 0.85905 1.43753 1.59097 1.29879 1.07500 1.90729 1.41523 1.26264 1.87228 1.21102 0.79738 0.82740 0.85565 1.90694 1.57908 1.31046 1.65918 1.48248 1.21618 1.40636 1.23675 1.22750 0.90536 0.90836 1.00944 1.23244 0.95298 1.00241 0.85331 1.88018 1.56863 1.50175 1.34355 1.21435 0.89383 0.86265 0.94175 1.22320 0.98076 0.97633 0.99750 1.20910 0.91970 0.97666 0.86839 1.44384 1.66540 1.14555 1.08290 1.19882 1.16794 0.85939 1.25311 0.95766 1.27226 0.99571 1.03332 0.94339 1.71010 1.39524 1.11587 1.35552 0.84023 0.75520 0.76295 0.75382 1.22404 1.15877 1.22561 1.21200 0.94646 0.90929 0.90899 1.21899 0.98017 1.00819 0.95163 1.22193 0.94655 0.99515 0.86400 0.93073 0.90056 0.92898 0.86250 0.87390 0.75196 0.75957 0.89020 0.86279 0.85148 0.92230 0.90342 0.93563 0.94473 0.94088 0.93938 0.94085 0.93684 0.89283 0.91906 0.90225 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.51 71.98 0.61 -2.02 16 2 C -0.09 -1.43 1.54 -11.54 -0.02 -1.45 16 3 H 0.11 1.61 6.25 -2.38 -0.01 1.59 16 4 C -0.13 -1.56 4.98 29.85 0.15 -1.41 16 5 C 0.52 6.62 7.83 87.66 0.69 7.30 16 6 N -0.84 -4.70 8.87 -173.54 -1.54 -6.24 16 7 O -0.58 -11.77 14.80 -3.04 -0.04 -11.81 16 8 C 0.52 11.91 6.73 87.66 0.59 12.50 16 9 O -0.58 -18.30 15.72 -3.05 -0.05 -18.35 16 10 N -0.61 -12.67 2.52 -817.42 -2.06 -14.73 16 11 C 0.07 0.98 6.31 86.36 0.54 1.53 16 12 C 0.04 0.60 6.60 72.08 0.48 1.08 16 13 O -0.38 -9.92 9.01 -148.98 -1.34 -11.27 16 14 C 0.13 3.71 0.68 -10.71 -0.01 3.70 16 15 C -0.14 -4.44 4.33 30.65 0.13 -4.31 16 16 C 0.15 5.88 6.29 86.36 0.54 6.42 16 17 N -0.61 -29.09 2.70 -699.89 -1.89 -30.98 16 18 C -0.35 -20.08 9.70 84.03 0.82 -19.26 16 19 H 0.02 1.54 8.06 -2.91 -0.02 1.52 16 20 C -0.05 -2.74 4.83 84.86 0.41 -2.33 16 21 N -0.94 -59.42 13.70 21.65 0.30 -59.13 16 22 Si 1.06 51.35 27.02 68.60 1.85 53.21 16 23 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.23 -10.05 4.71 99.48 0.47 -9.58 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 26 C 0.15 6.27 4.11 86.22 0.35 6.62 16 27 C -0.12 -4.06 5.09 30.51 0.16 -3.90 16 28 C 0.10 2.45 5.31 86.34 0.46 2.90 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.60 5.98 -2.39 -0.01 1.59 16 31 H 0.05 1.11 7.90 -2.38 -0.02 1.09 16 32 H 0.12 0.90 7.82 -2.39 -0.02 0.89 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.42 0.19 8.83 -92.71 -0.82 -0.63 16 35 H 0.41 1.73 8.93 -92.70 -0.83 0.91 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 1.01 5.39 -2.39 -0.01 1.00 16 38 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.02 6.29 -2.39 -0.02 1.00 16 40 H 0.08 2.09 6.16 -2.38 -0.01 2.07 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.35 7.83 -2.39 -0.02 1.34 16 43 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 44 H 0.25 16.12 8.73 -92.70 -0.81 15.31 16 45 H 0.04 1.91 5.88 -2.39 -0.01 1.90 16 46 H 0.05 1.87 6.26 -2.39 -0.01 1.85 16 47 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.08 2.40 7.06 -2.39 -0.02 2.38 16 50 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -80.18 376.51 0.18 -80.00 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.95 Total: 11.92 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 5.90 Total: 7.37 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -5.20 Total: -111.07 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.43 Total: -41.43 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 1.85 Total: 53.21 kcal Total: -80.18 0.18 -80.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700331334.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.633 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds