Wall clock time and date at job start Tue Mar 31 2020 23:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46935 * 2 1 4 4 N 1.46901 * 109.47111 * 120.00486 * 2 1 3 5 5 C 1.46898 * 110.99614 * 274.99666 * 4 2 1 6 6 C 1.50706 * 109.46984 * 180.02562 * 5 4 2 7 7 O 1.21295 * 119.99863 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00080 * 180.02562 * 6 5 4 9 9 C 1.37105 * 119.99873 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99509 * 359.71860 * 9 8 6 11 11 C 1.38950 * 120.00048 * 179.72298 * 9 8 6 12 12 N 1.31413 * 119.99930 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99918 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47151 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47086 * 119.99941 * 13 11 9 16 16 H 1.48500 * 109.46879 * 239.99997 * 13 11 9 17 17 C 1.53001 * 109.46776 * 240.00548 * 2 1 3 18 18 H 1.08998 * 109.50624 * 185.09725 * 17 2 1 19 19 C 1.53298 * 109.51373 * 64.99809 * 17 2 1 20 20 N 1.47153 * 108.38364 * 187.76984 * 19 17 2 21 21 C 1.34777 * 120.98020 * 230.51295 * 20 19 17 22 22 O 1.21276 * 120.00137 * 359.97438 * 21 20 19 23 23 C 1.50696 * 119.99373 * 180.02562 * 21 20 19 24 24 C 1.52999 * 109.47022 * 180.02562 * 23 21 20 25 25 C 1.53006 * 117.49835 * 243.62310 * 24 23 21 26 26 C 1.52999 * 60.00003 * 252.50866 * 25 24 23 27 27 C 1.47152 * 118.03056 * 50.53920 * 20 19 17 28 28 C 1.53291 * 108.38425 * 309.45935 * 27 20 19 29 29 O 1.42957 * 109.51266 * 305.25089 * 17 2 1 30 30 H 1.09000 * 109.47218 * 59.99234 * 1 2 3 31 31 H 1.09003 * 109.46935 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46748 * 299.99606 * 1 2 3 33 33 H 1.00890 * 111.00276 * 38.95474 * 4 2 1 34 34 H 1.09004 * 109.47320 * 60.00702 * 5 4 2 35 35 H 1.09001 * 109.47291 * 299.99999 * 5 4 2 36 36 H 0.96996 * 119.99858 * 359.72084 * 8 6 5 37 37 H 0.96999 * 119.99993 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.68272 * 307.49971 * 19 17 2 39 39 H 1.09006 * 109.67939 * 68.01019 * 19 17 2 40 40 H 1.08999 * 109.47772 * 300.00217 * 23 21 20 41 41 H 1.09003 * 109.47672 * 60.00463 * 23 21 20 42 42 H 1.09001 * 115.55062 * 29.32474 * 24 23 21 43 43 H 1.09000 * 117.50106 * 0.02562 * 25 24 23 44 44 H 1.09002 * 117.49336 * 145.01962 * 25 24 23 45 45 H 1.09004 * 117.49836 * 252.51059 * 26 25 24 46 46 H 1.08991 * 117.50169 * 107.49050 * 26 25 24 47 47 H 1.08995 * 109.68241 * 69.18918 * 27 20 19 48 48 H 1.09005 * 109.67567 * 189.74048 * 27 20 19 49 49 H 1.09006 * 109.51044 * 172.22969 * 28 27 20 50 50 H 1.09001 * 109.51358 * 292.32689 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5886 -0.5217 3.5557 7 8 2.8689 -1.6987 3.4698 8 7 2.7288 0.1203 4.7323 9 6 3.1897 -0.5566 5.8319 10 1 3.4361 -1.6054 5.7562 11 6 3.3397 0.1066 7.0437 12 7 3.0403 1.3829 7.1356 13 14 3.9670 -0.8159 8.5420 14 1 4.2295 -2.2314 8.1777 15 1 5.2238 -0.1861 9.0207 16 1 2.9457 -0.7636 9.6188 17 6 2.0400 -0.7212 -1.2493 18 1 3.1261 -0.8013 -1.2055 19 6 1.6348 0.0699 -2.4984 20 7 1.9697 -0.7332 -3.6852 21 6 2.6763 -0.2044 -4.7038 22 8 3.0457 0.9495 -4.6510 23 6 3.0063 -1.0469 -5.9089 24 6 3.8094 -0.2133 -6.9094 25 6 3.1750 0.0546 -8.2758 26 6 4.3439 -0.9251 -8.1539 27 6 1.5097 -2.1303 -3.7270 28 6 1.9209 -2.8141 -2.4181 29 8 1.4659 -2.0288 -1.3136 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.4497 -1.4980 1.4099 34 1 1.0871 0.6162 2.5526 35 1 2.7590 1.0461 2.1182 36 1 2.5078 1.0623 4.8001 37 1 3.1446 1.8459 7.9815 38 1 0.5627 0.2650 -2.4776 39 1 2.1792 1.0139 -2.5277 40 1 3.5964 -1.9093 -5.5989 41 1 2.0833 -1.3878 -6.3778 42 1 4.4255 0.5752 -6.4770 43 1 2.1854 -0.3627 -8.4617 44 1 3.3737 1.0195 -8.7423 45 1 5.3115 -0.6048 -8.5403 46 1 4.1235 -1.9872 -8.2597 47 1 0.4250 -2.1567 -3.8300 48 1 1.9717 -2.6437 -4.5703 49 1 1.4719 -3.8062 -2.3690 50 1 3.0066 -2.9035 -2.3796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700596503.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:05 Heat of formation + Delta-G solvation = -111.282920 kcal Electronic energy + Delta-G solvation = -29485.973389 eV Core-core repulsion = 25320.071108 eV Total energy + Delta-G solvation = -4165.902281 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53559 -40.26762 -39.72072 -37.95057 -37.41111 -35.94618 -35.71386 -33.45290 -33.11985 -30.93852 -30.34632 -28.26629 -27.94949 -26.17964 -24.97366 -23.87090 -23.21989 -21.88020 -21.35204 -21.01753 -20.08584 -19.92061 -18.39648 -17.91541 -17.58370 -17.15734 -16.88286 -16.68448 -16.38195 -16.35544 -16.00111 -15.80477 -15.68397 -15.15400 -15.03152 -14.86177 -14.77233 -14.37773 -14.24781 -13.64319 -13.61445 -13.48623 -13.34131 -13.27670 -13.08288 -12.83169 -12.48294 -12.40668 -12.35783 -12.29838 -12.23917 -12.11225 -11.93972 -11.66967 -11.51708 -11.30640 -11.13657 -10.95352 -10.73700 -10.35456 -10.01740 -9.58735 -9.29431 -8.46994 -5.95821 1.36495 1.41561 1.55092 1.56134 1.81044 2.04901 2.29033 2.77855 2.87673 2.90587 3.20165 3.44054 3.48968 3.72572 3.83476 3.86122 3.94930 4.03461 4.07239 4.14616 4.21866 4.24481 4.30705 4.36754 4.43636 4.46038 4.48324 4.56847 4.59829 4.62040 4.69532 4.76638 4.81054 4.82336 4.91765 4.97708 5.02837 5.05353 5.27109 5.29081 5.34408 5.37430 5.40911 5.89240 6.09334 6.25286 6.30372 6.41745 6.60005 7.08555 7.12409 7.55896 8.11420 8.70639 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024552 B = 0.001786 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.179219 B =15670.367525 C =15799.992967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.099 0.901 4 N -0.674 5.674 5 C 0.065 3.935 6 C 0.438 3.562 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.994 3.006 14 H -0.274 1.274 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.102 3.898 18 H 0.046 0.954 19 C 0.086 3.914 20 N -0.617 5.617 21 C 0.511 3.489 22 O -0.585 6.585 23 C -0.099 4.099 24 C -0.164 4.164 25 C -0.181 4.181 26 C -0.164 4.164 27 C 0.074 3.926 28 C 0.039 3.961 29 O -0.382 6.382 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.348 0.652 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.126 0.874 49 H 0.128 0.872 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 -4.588 -30.100 31.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 H 0.117 0.883 4 N -0.306 5.306 5 C -0.068 4.068 6 C 0.225 3.775 7 O -0.510 6.510 8 N -0.211 5.211 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.818 3.182 14 H -0.198 1.198 15 H -0.196 1.196 16 H -0.195 1.195 17 C 0.043 3.957 18 H 0.064 0.936 19 C -0.037 4.037 20 N -0.351 5.351 21 C 0.301 3.699 22 O -0.465 6.465 23 C -0.138 4.138 24 C -0.183 4.183 25 C -0.218 4.218 26 C -0.201 4.201 27 C -0.048 4.048 28 C -0.038 4.038 29 O -0.300 6.300 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.167 0.833 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.133 0.867 47 H 0.111 0.889 48 H 0.144 0.856 49 H 0.146 0.854 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.001 -4.626 -29.995 30.759 hybrid contribution -0.333 0.607 1.234 1.415 sum -5.334 -4.019 -28.761 29.526 Atomic orbital electron populations 1.22392 0.95108 1.02840 1.02721 1.21610 0.94603 0.97300 0.88218 0.88296 1.60067 1.58661 1.09086 1.02743 1.21578 1.01155 0.95316 0.88720 1.20881 0.83419 0.88016 0.85140 1.90493 1.56626 1.18388 1.85446 1.41935 1.58384 1.12565 1.08176 1.19714 1.42145 0.95881 0.88635 0.90364 1.26052 0.97221 0.96631 1.01404 1.69680 1.48692 1.09605 1.28144 0.84856 0.78169 0.78000 0.77204 1.19831 1.19636 1.19481 1.22283 0.96544 0.83615 0.93277 0.93572 1.22256 1.02144 0.95266 0.84053 1.48297 1.54640 1.13890 1.18245 1.21338 0.76218 0.87700 0.84608 1.90676 1.54547 1.20310 1.80923 1.21286 1.02713 0.98075 0.91741 1.22006 1.03945 1.02651 0.89657 1.23127 0.98634 1.01142 0.98880 1.23086 0.98410 0.99118 0.99506 1.22722 1.01997 0.79956 1.00121 1.23185 0.99584 0.95839 0.85186 1.87979 1.67761 1.25750 1.48553 0.90282 0.91985 0.92619 0.83277 0.91357 0.87938 0.76966 0.91301 0.89121 0.89735 0.86276 0.85974 0.89545 0.87418 0.89380 0.88614 0.86697 0.88860 0.85597 0.85376 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 8.73 71.98 0.63 -2.88 16 2 C 0.09 2.26 2.46 44.92 0.11 2.37 16 3 H 0.10 2.22 7.80 -2.39 -0.02 2.20 16 4 N -0.67 -22.23 5.83 -495.55 -2.89 -25.11 16 5 C 0.06 2.28 5.97 85.56 0.51 2.79 16 6 C 0.44 21.40 7.82 87.66 0.69 22.09 16 7 O -0.62 -35.54 15.78 -3.08 -0.05 -35.59 16 8 N -0.57 -30.04 5.29 -306.97 -1.62 -31.66 16 9 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 10 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 11 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 12 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 13 Si 0.99 43.51 29.55 68.60 2.03 45.54 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 17 C 0.10 2.37 2.70 30.69 0.08 2.45 16 18 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 19 C 0.09 1.72 5.82 86.35 0.50 2.22 16 20 N -0.62 -10.49 3.02 -817.36 -2.47 -12.96 16 21 C 0.51 10.06 7.71 87.66 0.68 10.74 16 22 O -0.58 -17.05 15.03 -3.02 -0.05 -17.09 16 23 C -0.10 -1.08 4.35 29.85 0.13 -0.95 16 24 C -0.16 -2.37 5.41 -10.79 -0.06 -2.43 16 25 C -0.18 -2.06 10.18 30.60 0.31 -1.75 16 26 C -0.16 -1.57 10.25 30.59 0.31 -1.25 16 27 C 0.07 0.72 6.54 86.35 0.56 1.28 16 28 C 0.04 0.56 6.98 72.08 0.50 1.07 16 29 O -0.38 -8.53 9.45 -148.98 -1.41 -9.93 16 30 H 0.08 1.29 6.42 -2.39 -0.02 1.27 16 31 H 0.06 1.37 7.54 -2.39 -0.02 1.35 16 32 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 33 H 0.35 12.44 8.17 -89.70 -0.73 11.71 16 34 H 0.07 2.10 7.44 -2.39 -0.02 2.08 16 35 H 0.10 3.28 8.06 -2.39 -0.02 3.26 16 36 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 37 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 38 H 0.09 1.57 6.27 -2.39 -0.01 1.55 16 39 H 0.08 1.98 7.08 -2.38 -0.02 1.96 16 40 H 0.12 0.80 7.66 -2.39 -0.02 0.78 16 41 H 0.12 0.67 7.75 -2.39 -0.02 0.65 16 42 H 0.09 1.81 7.31 -2.39 -0.02 1.80 16 43 H 0.11 0.90 8.03 -2.39 -0.02 0.88 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.13 0.39 6.05 -2.38 -0.01 0.38 16 49 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -77.33 401.83 -0.43 -77.76 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.50 Total: 42.05 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.24 Total: 16.95 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -6.69 Total: -119.68 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -1.50 Total: -62.62 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -77.33 -0.43 -77.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700596503.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.526 kcal (2) G-P(sol) polarization free energy of solvation -77.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds