Wall clock time and date at job start Tue Mar 31 2020 23:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99247 * 9 7 5 11 11 H 1.48496 * 109.47375 * 209.99772 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99467 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.09006 * 109.51126 * 184.99727 * 13 2 1 15 15 C 1.53296 * 109.51206 * 64.90104 * 13 2 1 16 16 N 1.47152 * 108.38901 * 187.77162 * 15 13 2 17 17 C 1.34773 * 120.98350 * 230.51874 * 16 15 13 18 18 O 1.21281 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00121 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.47164 * 179.97438 * 19 17 16 21 21 C 1.45755 * 117.94974 * 269.73570 * 20 19 17 22 22 C 1.53102 * 110.38441 * 160.74470 * 21 20 19 23 23 C 1.53346 * 108.52942 * 51.11998 * 22 21 20 24 24 C 1.53067 * 108.42066 * 292.30702 * 23 22 21 25 25 C 1.33352 * 117.94510 * 90.00136 * 20 19 17 26 26 O 1.21285 * 118.24613 * 2.20124 * 25 20 19 27 27 C 1.47151 * 118.03239 * 50.53234 * 16 15 13 28 28 C 1.53289 * 108.38681 * 309.46609 * 27 16 15 29 29 O 1.42960 * 109.51691 * 305.10322 * 13 2 1 30 30 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 31 31 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68396 * 307.49868 * 15 13 2 36 36 H 1.09004 * 109.68024 * 68.00855 * 15 13 2 37 37 H 1.08997 * 109.47372 * 299.99807 * 19 17 16 38 38 H 1.09005 * 109.47106 * 59.99740 * 19 17 16 39 39 H 1.08991 * 109.30362 * 281.23953 * 21 20 19 40 40 H 1.09005 * 109.29611 * 40.61640 * 21 20 19 41 41 H 1.09000 * 109.80711 * 291.32454 * 22 21 20 42 42 H 1.09007 * 109.67489 * 170.83184 * 22 21 20 43 43 H 1.08999 * 109.66860 * 172.57523 * 23 22 21 44 44 H 1.09000 * 109.70494 * 52.05722 * 23 22 21 45 45 H 1.09003 * 109.40240 * 288.76793 * 24 23 22 46 46 H 1.09006 * 109.39930 * 169.02931 * 24 23 22 47 47 H 1.08995 * 109.68172 * 69.19319 * 27 16 15 48 48 H 1.08999 * 109.67716 * 189.74474 * 27 16 15 49 49 H 1.09005 * 109.51503 * 172.22814 * 28 27 16 50 50 H 1.09006 * 109.51733 * 292.32810 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.5139 0.1823 5.8845 11 1 3.8842 -0.3287 5.9187 12 1 3.0951 1.6924 4.8356 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7999 -1.2062 15 6 1.6328 0.0683 -2.4985 16 7 1.9677 -0.7350 -3.6850 17 6 2.6728 -0.2061 -4.7045 18 8 3.0408 0.9484 -4.6526 19 6 3.0041 -1.0491 -5.9089 20 7 3.7700 -0.2500 -6.8686 21 6 3.0317 0.4919 -7.8829 22 6 3.9029 1.6068 -8.4679 23 6 5.2434 1.0011 -8.9012 24 6 6.0023 0.5592 -7.6475 25 6 5.0993 -0.2514 -6.7627 26 8 5.6062 -0.9440 -5.9058 27 6 1.5098 -2.1329 -3.7256 28 6 1.9230 -2.8153 -2.4166 29 8 1.4686 -2.0303 -1.3115 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6319 1.1526 34 1 3.2330 -2.4001 4.2460 35 1 0.5603 0.2619 -2.4770 36 1 2.1757 1.0130 -2.5288 37 1 3.5960 -1.9100 -5.5982 38 1 2.0815 -1.3924 -6.3770 39 1 2.7293 -0.1889 -8.6785 40 1 2.1422 0.9314 -7.4315 41 1 4.0752 2.3749 -7.7140 42 1 3.4044 2.0473 -9.3314 43 1 5.8268 1.7484 -9.4391 44 1 5.0664 0.1401 -9.5457 45 1 6.3473 1.4389 -7.1042 46 1 6.8616 -0.0450 -7.9387 47 1 0.4250 -2.1610 -3.8277 48 1 1.9718 -2.6461 -4.5689 49 1 1.4755 -3.8080 -2.3664 50 1 3.0089 -2.9031 -2.3787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700603347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:45 Heat of formation + Delta-G solvation = -91.851539 kcal Electronic energy + Delta-G solvation = -30843.782135 eV Core-core repulsion = 26678.722462 eV Total energy + Delta-G solvation = -4165.059673 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10104 -39.99491 -38.27966 -36.73886 -35.51014 -34.52552 -34.40116 -32.47811 -30.43832 -30.03537 -28.91580 -28.27359 -26.68123 -24.90471 -24.50191 -23.43791 -22.89221 -22.07233 -19.71730 -19.47964 -18.86962 -17.63676 -17.24741 -17.00669 -16.82948 -16.20322 -15.93940 -15.51803 -15.39788 -15.01400 -14.65598 -14.57985 -14.43288 -14.21538 -13.91778 -13.69502 -13.48327 -13.43702 -13.28451 -12.82769 -12.52011 -12.37042 -12.17596 -12.04331 -11.96345 -11.68188 -11.39436 -11.37947 -11.29729 -11.10208 -10.81341 -10.70979 -10.52184 -10.29061 -10.14825 -9.94754 -9.88910 -9.80405 -9.62274 -8.98406 -8.85738 -8.48339 -6.89681 -5.69811 -2.98535 2.26959 2.49310 2.57835 2.96975 3.47752 3.52654 3.54495 3.99211 4.19162 4.26322 4.31089 4.35081 4.40650 4.61279 4.73145 4.76658 4.86371 4.92129 5.03000 5.03132 5.09994 5.14839 5.20303 5.31360 5.35468 5.40147 5.43991 5.46836 5.51497 5.62665 5.69804 5.75655 5.77340 5.82460 5.94756 6.00934 6.02001 6.22894 6.37932 6.49394 6.67730 6.84889 7.11827 7.18015 7.24445 7.50274 7.75029 7.89236 8.04216 8.48315 9.60087 10.17881 10.54572 11.52666 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.002411 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.671167 B =11611.834936 C =11998.156683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.058 0.942 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.084 3.916 16 N -0.612 5.612 17 C 0.502 3.498 18 O -0.532 6.532 19 C 0.089 3.911 20 N -0.587 5.587 21 C 0.117 3.883 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.522 3.478 26 O -0.550 6.550 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 1.757 -30.370 30.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.076 0.924 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.016 3.984 14 H 0.081 0.919 15 C -0.039 4.039 16 N -0.347 5.347 17 C 0.288 3.712 18 O -0.408 6.408 19 C -0.038 4.038 20 N -0.319 5.319 21 C -0.006 4.006 22 C -0.174 4.174 23 C -0.161 4.161 24 C -0.172 4.172 25 C 0.311 3.689 26 O -0.427 6.427 27 C -0.051 4.051 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.122 0.878 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.509 2.098 -29.647 29.759 hybrid contribution 0.179 0.179 0.770 0.810 sum -1.330 2.277 -28.877 28.997 Atomic orbital electron populations 1.22412 0.98673 1.01603 0.99485 1.20185 0.92791 0.94588 0.84986 0.92377 1.42354 1.77848 1.10978 1.04870 1.19245 1.36632 0.93797 0.87285 0.91197 1.24741 1.02278 0.95954 0.98001 1.69680 1.51018 1.08516 1.28689 0.86201 0.77247 0.78796 0.84021 1.21775 1.21831 1.20789 1.22972 0.97692 0.83008 0.94684 0.91860 1.22473 1.01762 0.95845 0.83781 1.48194 1.54781 1.12806 1.18951 1.21066 0.77499 0.88303 0.84306 1.90688 1.52344 1.17879 1.79919 1.21380 0.98164 0.95130 0.89104 1.46908 1.05788 1.48296 1.30955 1.21456 0.95280 0.93682 0.90198 1.21905 0.95976 0.97814 1.01699 1.21666 0.96175 1.01408 0.96820 1.21643 0.98252 1.01157 0.96143 1.20191 0.82152 0.81958 0.84601 1.90746 1.73705 1.42047 1.36217 1.22523 1.00766 0.81701 1.00149 1.22902 0.99750 0.95174 0.85518 1.88099 1.67674 1.25786 1.45977 0.94732 0.92424 0.92907 0.77663 0.93580 0.90139 0.88384 0.86442 0.87565 0.91457 0.90602 0.90411 0.89693 0.90427 0.91098 0.88027 0.88151 0.90186 0.89372 0.87764 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.06 37.16 0.34 -2.69 16 2 C 0.19 3.83 2.77 -67.93 -0.19 3.64 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -18.73 5.10 -53.43 -0.27 -19.00 16 5 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 6 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 9 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 C 0.08 1.36 2.61 -26.58 -0.07 1.29 16 14 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 15 C 0.08 1.27 5.82 -3.53 -0.02 1.25 16 16 N -0.61 -8.02 3.02 -172.28 -0.52 -8.54 16 17 C 0.50 6.87 7.77 -10.99 -0.09 6.78 16 18 O -0.53 -9.22 15.89 5.56 0.09 -9.13 16 19 C 0.09 0.88 4.07 -5.19 -0.02 0.86 16 20 N -0.59 -5.87 2.30 -176.22 -0.41 -6.28 16 21 C 0.12 0.76 6.32 -4.39 -0.03 0.73 16 22 C -0.14 -0.75 6.03 -26.50 -0.16 -0.91 16 23 C -0.12 -0.63 6.03 -26.52 -0.16 -0.79 16 24 C -0.13 -1.07 6.03 -28.10 -0.17 -1.24 16 25 C 0.52 6.29 7.44 -11.87 -0.09 6.20 16 26 O -0.55 -9.02 16.18 5.55 0.09 -8.93 16 27 C 0.07 0.71 6.54 -3.54 -0.02 0.69 16 28 C 0.04 0.56 6.98 37.31 0.26 0.82 16 29 O -0.36 -6.18 9.24 -35.23 -0.33 -6.50 16 30 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 31 H 0.06 1.13 7.56 -51.92 -0.39 0.74 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.39 10.94 7.58 -40.82 -0.31 10.63 16 34 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.08 1.13 6.27 -51.93 -0.33 0.81 16 36 H 0.10 1.61 7.08 -51.93 -0.37 1.24 16 37 H 0.12 1.23 6.65 -51.93 -0.35 0.89 16 38 H 0.11 0.64 7.88 -51.93 -0.41 0.24 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.61 6.05 -51.93 -0.31 0.29 16 49 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -37.61 394.07 -8.62 -46.23 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.26 Total: 7.26 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -0.66 Total: 9.20 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.47 Total: -61.98 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.15 Total: -24.56 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.61 -8.62 -46.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700603347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.619 kcal (2) G-P(sol) polarization free energy of solvation -37.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds