Wall clock time and date at job start Tue Mar 31 2020 23:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99247 * 9 7 5 11 11 H 1.48496 * 109.47375 * 209.99772 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99467 * 9 7 5 13 13 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 14 14 H 1.09006 * 109.51126 * 184.99727 * 13 2 1 15 15 C 1.53296 * 109.51206 * 64.90104 * 13 2 1 16 16 N 1.47152 * 108.38901 * 187.77162 * 15 13 2 17 17 C 1.34773 * 120.98350 * 230.51874 * 16 15 13 18 18 O 1.21281 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00121 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.47164 * 179.97438 * 19 17 16 21 21 C 1.45755 * 117.94974 * 269.73570 * 20 19 17 22 22 C 1.53102 * 110.38441 * 160.74470 * 21 20 19 23 23 C 1.53346 * 108.52942 * 51.11998 * 22 21 20 24 24 C 1.53067 * 108.42066 * 292.30702 * 23 22 21 25 25 C 1.33352 * 117.94510 * 90.00136 * 20 19 17 26 26 O 1.21285 * 118.24613 * 2.20124 * 25 20 19 27 27 C 1.47151 * 118.03239 * 50.53234 * 16 15 13 28 28 C 1.53289 * 108.38681 * 309.46609 * 27 16 15 29 29 O 1.42960 * 109.51691 * 305.10322 * 13 2 1 30 30 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 31 31 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 33 33 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 34 34 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68396 * 307.49868 * 15 13 2 36 36 H 1.09004 * 109.68024 * 68.00855 * 15 13 2 37 37 H 1.08997 * 109.47372 * 299.99807 * 19 17 16 38 38 H 1.09005 * 109.47106 * 59.99740 * 19 17 16 39 39 H 1.08991 * 109.30362 * 281.23953 * 21 20 19 40 40 H 1.09005 * 109.29611 * 40.61640 * 21 20 19 41 41 H 1.09000 * 109.80711 * 291.32454 * 22 21 20 42 42 H 1.09007 * 109.67489 * 170.83184 * 22 21 20 43 43 H 1.08999 * 109.66860 * 172.57523 * 23 22 21 44 44 H 1.09000 * 109.70494 * 52.05722 * 23 22 21 45 45 H 1.09003 * 109.40240 * 288.76793 * 24 23 22 46 46 H 1.09006 * 109.39930 * 169.02931 * 24 23 22 47 47 H 1.08995 * 109.68172 * 69.19319 * 27 16 15 48 48 H 1.08999 * 109.67716 * 189.74474 * 27 16 15 49 49 H 1.09005 * 109.51503 * 172.22814 * 28 27 16 50 50 H 1.09006 * 109.51733 * 292.32810 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.5139 0.1823 5.8845 11 1 3.8842 -0.3287 5.9187 12 1 3.0951 1.6924 4.8356 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7999 -1.2062 15 6 1.6328 0.0683 -2.4985 16 7 1.9677 -0.7350 -3.6850 17 6 2.6728 -0.2061 -4.7045 18 8 3.0408 0.9484 -4.6526 19 6 3.0041 -1.0491 -5.9089 20 7 3.7700 -0.2500 -6.8686 21 6 3.0317 0.4919 -7.8829 22 6 3.9029 1.6068 -8.4679 23 6 5.2434 1.0011 -8.9012 24 6 6.0023 0.5592 -7.6475 25 6 5.0993 -0.2514 -6.7627 26 8 5.6062 -0.9440 -5.9058 27 6 1.5098 -2.1329 -3.7256 28 6 1.9230 -2.8153 -2.4166 29 8 1.4686 -2.0303 -1.3115 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6319 1.1526 34 1 3.2330 -2.4001 4.2460 35 1 0.5603 0.2619 -2.4770 36 1 2.1757 1.0130 -2.5288 37 1 3.5960 -1.9100 -5.5982 38 1 2.0815 -1.3924 -6.3770 39 1 2.7293 -0.1889 -8.6785 40 1 2.1422 0.9314 -7.4315 41 1 4.0752 2.3749 -7.7140 42 1 3.4044 2.0473 -9.3314 43 1 5.8268 1.7484 -9.4391 44 1 5.0664 0.1401 -9.5457 45 1 6.3473 1.4389 -7.1042 46 1 6.8616 -0.0450 -7.9387 47 1 0.4250 -2.1610 -3.8277 48 1 1.9718 -2.6461 -4.5689 49 1 1.4755 -3.8080 -2.3664 50 1 3.0089 -2.9031 -2.3787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700603347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:44 Heat of formation + Delta-G solvation = -119.430527 kcal Electronic energy + Delta-G solvation = -30844.978049 eV Core-core repulsion = 26678.722462 eV Total energy + Delta-G solvation = -4166.255587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00275 -41.06038 -39.51418 -37.51780 -37.14854 -35.78778 -35.09145 -34.33989 -32.01251 -30.68775 -30.00385 -29.74917 -27.85456 -26.37995 -25.35854 -24.87476 -23.87507 -23.07277 -21.25788 -20.48392 -19.58755 -19.32964 -18.53413 -18.02157 -17.63781 -17.41663 -17.04944 -16.75555 -16.48075 -16.23196 -16.02384 -15.87071 -15.31839 -15.16346 -15.13876 -14.81978 -14.51551 -14.41263 -14.28258 -14.17825 -14.01735 -13.64603 -13.21293 -13.18082 -12.98456 -12.84458 -12.73589 -12.46970 -12.40397 -12.24766 -12.20120 -11.89253 -11.86227 -11.83553 -11.67028 -11.61260 -11.25954 -11.05438 -10.95488 -10.78301 -9.80768 -9.63914 -9.03205 -7.94085 -5.23239 1.33411 1.45266 1.47695 1.48136 1.55881 1.77604 2.07894 2.54978 2.75182 3.36730 3.40027 3.55777 3.56754 3.82098 3.87938 3.90321 3.92143 3.93959 3.97764 4.10680 4.12307 4.27452 4.30165 4.35752 4.43700 4.49771 4.54798 4.57263 4.59122 4.61383 4.76418 4.81996 4.84963 4.92616 4.94214 5.04186 5.07260 5.12722 5.18775 5.23673 5.31868 5.37680 5.49035 5.60603 6.20443 6.22596 6.27716 6.35997 6.95739 7.07797 7.33179 8.08492 8.33543 9.29559 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.002411 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.671167 B =11611.834936 C =11998.156683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.176 3.824 3 H 0.054 0.946 4 N -0.733 5.733 5 C -0.240 4.240 6 H 0.077 0.923 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.974 3.026 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.270 1.270 13 C 0.091 3.909 14 H 0.028 0.972 15 C 0.095 3.905 16 N -0.614 5.614 17 C 0.495 3.505 18 O -0.577 6.577 19 C 0.090 3.910 20 N -0.585 5.585 21 C 0.108 3.892 22 C -0.135 4.135 23 C -0.114 4.114 24 C -0.133 4.133 25 C 0.509 3.491 26 O -0.607 6.607 27 C 0.076 3.924 28 C 0.034 3.966 29 O -0.379 6.379 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.156 0.844 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.125 0.875 49 H 0.133 0.867 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 2.063 -33.487 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.067 3.933 3 H 0.072 0.928 4 N -0.374 5.374 5 C -0.372 4.372 6 H 0.095 0.905 7 C -0.271 4.271 8 N -0.621 5.621 9 Si 0.803 3.197 10 H -0.212 1.212 11 H -0.223 1.223 12 H -0.195 1.195 13 C 0.031 3.969 14 H 0.046 0.954 15 C -0.028 4.028 16 N -0.348 5.348 17 C 0.284 3.716 18 O -0.457 6.457 19 C -0.036 4.036 20 N -0.316 5.316 21 C -0.013 4.013 22 C -0.173 4.173 23 C -0.151 4.151 24 C -0.172 4.172 25 C 0.300 3.700 26 O -0.489 6.489 27 C -0.046 4.046 28 C -0.043 4.043 29 O -0.298 6.298 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.174 0.826 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.143 0.857 49 H 0.151 0.849 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.351 2.435 -32.838 33.098 hybrid contribution 0.717 0.070 1.658 1.808 sum -2.634 2.504 -31.179 31.390 Atomic orbital electron populations 1.22192 0.96447 1.01332 1.00592 1.20421 0.94190 0.94253 0.84403 0.92780 1.42536 1.78371 1.10449 1.06007 1.19650 1.35132 0.94165 0.88236 0.90547 1.25593 1.03007 0.96917 1.01544 1.69848 1.52778 1.10167 1.29286 0.85124 0.76946 0.77949 0.79660 1.21204 1.22296 1.19475 1.22529 0.95449 0.84098 0.94815 0.95356 1.22172 1.02311 0.94822 0.83517 1.48309 1.54589 1.13921 1.17965 1.21837 0.76410 0.88157 0.85192 1.90666 1.53956 1.20075 1.80957 1.21546 1.00091 0.93985 0.88002 1.47121 1.05461 1.47919 1.31083 1.21789 0.94870 0.94499 0.90129 1.21933 0.96365 0.96965 1.02029 1.21661 0.95707 1.02424 0.95310 1.21701 0.98222 1.00330 0.96969 1.20941 0.83215 0.81532 0.84351 1.90710 1.74900 1.44604 1.38690 1.22747 1.02580 0.79631 0.99621 1.23236 0.99101 0.96247 0.85713 1.88047 1.67701 1.25558 1.48505 0.90951 0.93295 0.94363 0.79348 0.94107 0.88323 0.90201 0.86974 0.82642 0.88008 0.90841 0.92826 0.86789 0.88564 0.89562 0.88758 0.87543 0.87556 0.85669 0.84880 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.06 71.98 0.65 -4.71 16 2 C 0.18 7.43 2.77 44.99 0.12 7.55 16 3 H 0.05 2.30 8.08 -2.39 -0.02 2.28 16 4 N -0.73 -39.47 5.10 -322.96 -1.65 -41.12 16 5 C -0.24 -13.95 9.93 84.03 0.83 -13.11 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 8 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 9 Si 0.97 47.96 29.55 68.60 2.03 49.98 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.09 3.33 2.61 30.69 0.08 3.41 16 14 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 15 C 0.10 2.85 5.82 86.35 0.50 3.35 16 16 N -0.61 -15.25 3.02 -817.37 -2.47 -17.72 16 17 C 0.50 13.12 7.77 87.66 0.68 13.80 16 18 O -0.58 -20.27 15.89 -3.03 -0.05 -20.32 16 19 C 0.09 1.59 4.07 85.63 0.35 1.94 16 20 N -0.59 -10.75 2.30 -830.63 -1.91 -12.67 16 21 C 0.11 1.09 6.32 86.55 0.55 1.64 16 22 C -0.14 -1.14 6.03 30.74 0.19 -0.95 16 23 C -0.11 -0.86 6.03 30.73 0.19 -0.67 16 24 C -0.13 -2.07 6.03 29.71 0.18 -1.89 16 25 C 0.51 12.20 7.44 87.71 0.65 12.85 16 26 O -0.61 -20.66 16.18 -3.05 -0.05 -20.71 16 27 C 0.08 1.28 6.54 86.35 0.56 1.85 16 28 C 0.03 0.82 6.98 72.08 0.50 1.33 16 29 O -0.38 -13.12 9.24 -148.98 -1.38 -14.50 16 30 H 0.07 2.09 6.42 -2.39 -0.02 2.07 16 31 H 0.05 1.88 7.56 -2.38 -0.02 1.86 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.37 22.00 7.58 -92.70 -0.70 21.30 16 34 H 0.25 15.46 8.31 -92.71 -0.77 14.68 16 35 H 0.10 2.58 6.27 -2.39 -0.01 2.56 16 36 H 0.08 2.69 7.08 -2.39 -0.02 2.67 16 37 H 0.11 2.18 6.65 -2.39 -0.02 2.17 16 38 H 0.16 1.15 7.88 -2.38 -0.02 1.14 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.81 8.10 -2.38 -0.02 0.79 16 41 H 0.05 0.72 8.12 -2.39 -0.02 0.70 16 42 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 43 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.09 0.44 8.13 -2.39 -0.02 0.42 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.13 1.22 6.05 -2.39 -0.01 1.20 16 49 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 50 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -87.43 394.07 1.55 -85.88 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.24 Total: 30.76 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.51 Total: 22.14 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -5.75 Total: -133.23 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -1.47 Total: -55.53 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -87.43 1.55 -85.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700603347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.555 kcal (2) G-P(sol) polarization free energy of solvation -87.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds