Wall clock time and date at job start Tue Mar 31 2020 23:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47009 * 2 1 4 4 N 1.46501 * 109.46827 * 240.00263 * 2 1 3 5 5 C 1.36941 * 120.00117 * 84.99836 * 4 2 1 6 6 H 1.07992 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99650 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99587 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00324 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47100 * 90.00323 * 9 7 5 11 11 H 1.48505 * 109.47148 * 209.99948 * 9 7 5 12 12 H 1.48499 * 109.47064 * 330.00185 * 9 7 5 13 13 C 1.52996 * 109.46927 * 120.00220 * 2 1 3 14 14 H 1.09003 * 109.50868 * 174.89607 * 13 2 1 15 15 C 1.53288 * 109.51390 * 294.99679 * 13 2 1 16 16 N 1.47155 * 108.38703 * 172.27904 * 15 13 2 17 17 C 1.34779 * 120.97928 * 129.48712 * 16 15 13 18 18 O 1.21279 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99499 * 179.97438 * 17 16 15 20 20 N 1.46493 * 109.46813 * 179.97438 * 19 17 16 21 21 C 1.45760 * 117.94664 * 269.73729 * 20 19 17 22 22 C 1.53103 * 110.38665 * 160.74538 * 21 20 19 23 23 C 1.53352 * 108.52739 * 51.11418 * 22 21 20 24 24 C 1.53071 * 108.42483 * 292.30820 * 23 22 21 25 25 C 1.33359 * 117.94916 * 89.99988 * 20 19 17 26 26 O 1.21282 * 118.24166 * 2.24487 * 25 20 19 27 27 C 1.47142 * 118.03612 * 309.46948 * 16 15 13 28 28 C 1.53297 * 108.38766 * 50.53055 * 27 16 15 29 29 O 1.42968 * 109.26403 * 307.67587 * 28 27 16 30 30 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46941 * 299.99619 * 1 2 3 32 32 H 1.08999 * 109.47131 * 59.99706 * 1 2 3 33 33 H 0.97006 * 119.99818 * 265.00262 * 4 2 1 34 34 H 0.96999 * 119.99939 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.68556 * 52.55488 * 15 13 2 36 36 H 1.09009 * 109.68155 * 292.00435 * 15 13 2 37 37 H 1.09000 * 109.46933 * 299.99418 * 19 17 16 38 38 H 1.08999 * 109.47056 * 60.00283 * 19 17 16 39 39 H 1.09002 * 109.29763 * 281.23592 * 21 20 19 40 40 H 1.08996 * 109.29827 * 40.61446 * 21 20 19 41 41 H 1.09001 * 109.80814 * 291.32576 * 22 21 20 42 42 H 1.08999 * 109.67999 * 170.82342 * 22 21 20 43 43 H 1.09000 * 109.67358 * 172.57809 * 23 22 21 44 44 H 1.09001 * 109.70634 * 52.05994 * 23 22 21 45 45 H 1.09004 * 109.40015 * 288.77253 * 24 23 22 46 46 H 1.09000 * 109.39812 * 169.03334 * 24 23 22 47 47 H 1.09008 * 109.68311 * 290.80968 * 27 16 15 48 48 H 1.08998 * 109.71463 * 170.27588 * 27 16 15 49 49 H 1.09002 * 109.51172 * 67.62438 * 28 27 16 50 50 H 1.08997 * 109.51619 * 187.72551 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0405 -2.4242 7 6 2.6122 -0.6617 -3.5091 8 7 2.7384 -0.0049 -4.6428 9 14 3.0565 -2.4741 -3.4253 10 1 1.8593 -3.2925 -3.7453 11 1 4.1323 -2.7660 -4.4065 12 1 3.5309 -2.8047 -2.0575 13 6 2.0400 -0.7213 1.2492 14 1 3.1262 -0.8015 1.2053 15 6 1.6351 0.0696 2.4983 16 7 1.9710 -0.7330 3.6850 17 6 2.6778 -0.2036 4.7033 18 8 3.0472 0.9503 4.6496 19 6 3.0090 -1.0457 5.9084 20 7 3.7779 -0.2468 6.8658 21 6 5.2310 -0.2560 6.7517 22 6 5.8304 0.9526 7.4756 23 6 5.2543 1.0051 8.8958 24 6 3.7625 1.3346 8.8008 25 6 3.1047 0.4390 7.7905 26 8 1.8968 0.3335 7.8171 27 6 1.5122 -2.1305 3.7274 28 6 1.9231 -2.8142 2.4184 29 8 1.4668 -2.0304 1.3132 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.0616 -0.4622 -5.4348 35 1 0.5627 0.2640 2.4781 36 1 2.1793 1.0137 2.5275 37 1 2.0863 -1.3870 6.3778 38 1 3.5995 -1.9077 5.5982 39 1 5.6210 -1.1738 7.1917 40 1 5.5098 -0.2179 5.6987 41 1 5.5727 1.8677 6.9423 42 1 6.9145 0.8507 7.5243 43 1 5.7648 1.7778 9.4706 44 1 5.3864 0.0385 9.3820 45 1 3.6399 2.3743 8.4972 46 1 3.2961 1.1857 9.7747 47 1 0.4274 -2.1577 3.8309 48 1 1.9743 -2.6438 4.5706 49 1 3.0089 -2.9021 2.3788 50 1 1.4756 -3.8069 2.3700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700603348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:47 Heat of formation + Delta-G solvation = -88.716437 kcal Electronic energy + Delta-G solvation = -30891.063386 eV Core-core repulsion = 26726.139661 eV Total energy + Delta-G solvation = -4164.923725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16721 -40.10534 -38.40770 -36.78800 -35.71206 -34.66691 -34.45353 -32.52373 -30.74956 -30.09487 -29.02926 -28.71947 -26.80395 -24.97675 -24.55798 -23.43192 -22.86661 -21.99181 -19.87374 -19.59113 -18.90851 -17.88342 -17.49307 -17.16953 -16.89600 -16.32837 -16.05297 -15.59358 -15.53061 -15.10322 -14.74420 -14.57549 -14.44410 -14.41461 -14.01253 -13.82950 -13.58191 -13.51704 -13.21403 -12.82783 -12.72464 -12.42506 -12.37452 -12.12858 -12.07988 -11.71788 -11.59557 -11.42612 -11.40551 -11.29534 -10.94252 -10.77712 -10.66239 -10.40756 -10.17652 -10.01376 -9.99027 -9.96281 -9.57166 -9.04689 -8.91701 -8.60248 -7.25152 -5.74918 -3.10050 2.20608 2.42125 2.51742 2.88753 3.39984 3.44728 3.47192 3.80613 4.14535 4.20186 4.28245 4.31681 4.37194 4.58326 4.62000 4.65286 4.78326 4.88185 4.93449 4.99025 4.99931 5.03343 5.10796 5.20686 5.28075 5.31044 5.37668 5.43282 5.49226 5.53033 5.54155 5.58548 5.68778 5.71211 5.75401 5.88820 5.89942 6.12327 6.25965 6.34829 6.49441 6.75135 7.06080 7.07522 7.15892 7.29705 7.81913 7.97087 8.01573 8.44344 9.23498 9.95793 10.16870 11.43353 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.002485 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.952506 B =11262.834368 C =11503.566454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.068 0.932 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.886 3.114 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.073 3.927 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.613 5.613 17 C 0.502 3.498 18 O -0.530 6.530 19 C 0.089 3.911 20 N -0.586 5.586 21 C 0.115 3.885 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.523 3.477 26 O -0.554 6.554 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.362 6.362 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.053 0.947 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -4.608 29.922 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.086 0.914 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C 0.014 3.986 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.348 5.348 17 C 0.288 3.712 18 O -0.406 6.406 19 C -0.038 4.038 20 N -0.318 5.318 21 C -0.008 4.008 22 C -0.174 4.174 23 C -0.161 4.161 24 C -0.172 4.172 25 C 0.313 3.687 26 O -0.432 6.432 27 C -0.051 4.051 28 C -0.033 4.033 29 O -0.280 6.280 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.071 0.929 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.391 -3.893 29.620 30.196 hybrid contribution 0.523 -1.330 -0.036 1.430 sum 4.914 -5.224 29.583 30.440 Atomic orbital electron populations 1.22382 0.98079 1.01683 1.00151 1.20171 0.93065 0.94857 0.83882 0.91416 1.42702 1.79519 1.09720 1.06748 1.19080 1.36907 0.95611 0.85594 0.89159 1.24658 1.01443 0.97526 0.95532 1.69708 1.52724 1.35556 1.00232 0.86523 0.78080 0.86890 0.76898 1.21063 1.21913 1.20335 1.23032 0.97533 0.82992 0.95072 0.91837 1.22454 1.02171 0.95794 0.83420 1.48178 1.54722 1.12834 1.19084 1.21073 0.77770 0.88375 0.83934 1.90697 1.52763 1.17615 1.79503 1.21382 0.99791 0.93692 0.88921 1.46917 1.07035 1.47793 1.30075 1.21485 0.78508 0.98891 1.01878 1.21907 1.00945 0.98701 0.95855 1.21671 0.94401 1.02831 0.97193 1.21642 0.96340 1.00281 0.98914 1.20185 0.87419 0.79729 0.81408 1.90719 1.14726 1.64090 1.73642 1.22508 1.01248 0.81688 0.99692 1.22921 0.99407 0.95251 0.85721 1.88103 1.67788 1.25983 1.46140 0.92511 0.94297 0.92370 0.80098 0.93100 0.89964 0.88129 0.86449 0.87550 0.91372 0.90463 0.90373 0.89592 0.90386 0.91090 0.88029 0.88178 0.90036 0.89303 0.92901 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.06 37.16 0.34 -2.60 16 2 C 0.19 3.68 2.77 -67.93 -0.19 3.50 16 3 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 4 N -0.74 -17.81 4.91 -53.42 -0.26 -18.08 16 5 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 8 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 9 Si 0.89 22.45 27.74 -169.99 -4.71 17.73 16 10 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 13 C 0.07 1.18 2.60 -26.58 -0.07 1.11 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.08 1.20 5.82 -3.54 -0.02 1.18 16 16 N -0.61 -7.57 3.02 -172.28 -0.52 -8.09 16 17 C 0.50 6.57 7.77 -10.98 -0.09 6.48 16 18 O -0.53 -8.90 15.89 5.56 0.09 -8.81 16 19 C 0.09 0.84 4.07 -5.19 -0.02 0.82 16 20 N -0.59 -5.63 2.30 -176.22 -0.41 -6.04 16 21 C 0.12 0.77 6.32 -4.39 -0.03 0.74 16 22 C -0.14 -0.76 6.03 -26.50 -0.16 -0.92 16 23 C -0.12 -0.60 6.03 -26.51 -0.16 -0.76 16 24 C -0.13 -0.98 6.03 -28.10 -0.17 -1.15 16 25 C 0.52 5.90 7.44 -11.87 -0.09 5.81 16 26 O -0.55 -8.42 16.18 5.56 0.09 -8.33 16 27 C 0.07 0.65 6.54 -3.54 -0.02 0.63 16 28 C 0.05 0.48 6.98 37.31 0.26 0.74 16 29 O -0.36 -5.59 9.26 -35.23 -0.33 -5.92 16 30 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 31 H 0.04 0.59 6.42 -51.93 -0.33 0.25 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.37 8.79 5.45 -40.82 -0.22 8.57 16 34 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.08 1.15 6.28 -51.93 -0.33 0.83 16 36 H 0.10 1.56 7.08 -51.92 -0.37 1.19 16 37 H 0.12 1.12 7.01 -51.93 -0.36 0.75 16 38 H 0.11 0.64 7.53 -51.93 -0.39 0.24 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.08 0.57 8.12 -51.93 -0.42 0.14 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.30 8.13 -51.93 -0.42 -0.13 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 48 H 0.09 0.51 6.06 -51.93 -0.31 0.20 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -37.69 390.98 -8.27 -45.95 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.21 Total: 5.82 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -0.67 Total: 8.60 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.41 Total: -60.95 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.15 Total: -23.05 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.69 -8.27 -45.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700603348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.763 kcal (2) G-P(sol) polarization free energy of solvation -37.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds