Wall clock time and date at job start Tue Mar 31 2020 23:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47009 * 2 1 4 4 N 1.46501 * 109.46827 * 240.00263 * 2 1 3 5 5 C 1.36941 * 120.00117 * 84.99836 * 4 2 1 6 6 H 1.07992 * 120.00035 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99650 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99587 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00324 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47100 * 90.00323 * 9 7 5 11 11 H 1.48505 * 109.47148 * 209.99948 * 9 7 5 12 12 H 1.48499 * 109.47064 * 330.00185 * 9 7 5 13 13 C 1.52996 * 109.46927 * 120.00220 * 2 1 3 14 14 H 1.09003 * 109.50868 * 174.89607 * 13 2 1 15 15 C 1.53288 * 109.51390 * 294.99679 * 13 2 1 16 16 N 1.47155 * 108.38703 * 172.27904 * 15 13 2 17 17 C 1.34779 * 120.97928 * 129.48712 * 16 15 13 18 18 O 1.21279 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99499 * 179.97438 * 17 16 15 20 20 N 1.46493 * 109.46813 * 179.97438 * 19 17 16 21 21 C 1.45760 * 117.94664 * 269.73729 * 20 19 17 22 22 C 1.53103 * 110.38665 * 160.74538 * 21 20 19 23 23 C 1.53352 * 108.52739 * 51.11418 * 22 21 20 24 24 C 1.53071 * 108.42483 * 292.30820 * 23 22 21 25 25 C 1.33359 * 117.94916 * 89.99988 * 20 19 17 26 26 O 1.21282 * 118.24166 * 2.24487 * 25 20 19 27 27 C 1.47142 * 118.03612 * 309.46948 * 16 15 13 28 28 C 1.53297 * 108.38766 * 50.53055 * 27 16 15 29 29 O 1.42968 * 109.26403 * 307.67587 * 28 27 16 30 30 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46941 * 299.99619 * 1 2 3 32 32 H 1.08999 * 109.47131 * 59.99706 * 1 2 3 33 33 H 0.97006 * 119.99818 * 265.00262 * 4 2 1 34 34 H 0.96999 * 119.99939 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.68556 * 52.55488 * 15 13 2 36 36 H 1.09009 * 109.68155 * 292.00435 * 15 13 2 37 37 H 1.09000 * 109.46933 * 299.99418 * 19 17 16 38 38 H 1.08999 * 109.47056 * 60.00283 * 19 17 16 39 39 H 1.09002 * 109.29763 * 281.23592 * 21 20 19 40 40 H 1.08996 * 109.29827 * 40.61446 * 21 20 19 41 41 H 1.09001 * 109.80814 * 291.32576 * 22 21 20 42 42 H 1.08999 * 109.67999 * 170.82342 * 22 21 20 43 43 H 1.09000 * 109.67358 * 172.57809 * 23 22 21 44 44 H 1.09001 * 109.70634 * 52.05994 * 23 22 21 45 45 H 1.09004 * 109.40015 * 288.77253 * 24 23 22 46 46 H 1.09000 * 109.39812 * 169.03334 * 24 23 22 47 47 H 1.09008 * 109.68311 * 290.80968 * 27 16 15 48 48 H 1.08998 * 109.71463 * 170.27588 * 27 16 15 49 49 H 1.09002 * 109.51172 * 67.62438 * 28 27 16 50 50 H 1.08997 * 109.51619 * 187.72551 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0405 -2.4242 7 6 2.6122 -0.6617 -3.5091 8 7 2.7384 -0.0049 -4.6428 9 14 3.0565 -2.4741 -3.4253 10 1 1.8593 -3.2925 -3.7453 11 1 4.1323 -2.7660 -4.4065 12 1 3.5309 -2.8047 -2.0575 13 6 2.0400 -0.7213 1.2492 14 1 3.1262 -0.8015 1.2053 15 6 1.6351 0.0696 2.4983 16 7 1.9710 -0.7330 3.6850 17 6 2.6778 -0.2036 4.7033 18 8 3.0472 0.9503 4.6496 19 6 3.0090 -1.0457 5.9084 20 7 3.7779 -0.2468 6.8658 21 6 5.2310 -0.2560 6.7517 22 6 5.8304 0.9526 7.4756 23 6 5.2543 1.0051 8.8958 24 6 3.7625 1.3346 8.8008 25 6 3.1047 0.4390 7.7905 26 8 1.8968 0.3335 7.8171 27 6 1.5122 -2.1305 3.7274 28 6 1.9231 -2.8142 2.4184 29 8 1.4668 -2.0304 1.3132 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.0616 -0.4622 -5.4348 35 1 0.5627 0.2640 2.4781 36 1 2.1793 1.0137 2.5275 37 1 2.0863 -1.3870 6.3778 38 1 3.5995 -1.9077 5.5982 39 1 5.6210 -1.1738 7.1917 40 1 5.5098 -0.2179 5.6987 41 1 5.5727 1.8677 6.9423 42 1 6.9145 0.8507 7.5243 43 1 5.7648 1.7778 9.4706 44 1 5.3864 0.0385 9.3820 45 1 3.6399 2.3743 8.4972 46 1 3.2961 1.1857 9.7747 47 1 0.4274 -2.1577 3.8309 48 1 1.9743 -2.6438 4.5706 49 1 3.0089 -2.9021 2.3788 50 1 1.4756 -3.8069 2.3700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700603348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:46 Heat of formation + Delta-G solvation = -116.399985 kcal Electronic energy + Delta-G solvation = -30892.263835 eV Core-core repulsion = 26726.139661 eV Total energy + Delta-G solvation = -4166.124173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00941 -41.07636 -39.54010 -37.51837 -37.28352 -35.80590 -35.09962 -34.36561 -32.39410 -30.70301 -30.25782 -29.80969 -27.87587 -26.30487 -25.34569 -24.73247 -23.79557 -23.05024 -21.41635 -20.48890 -19.78996 -19.58258 -18.54272 -18.05449 -17.63599 -17.43241 -17.01557 -16.72001 -16.58779 -16.31817 -16.05107 -15.78233 -15.41913 -15.17805 -15.01993 -14.73739 -14.56093 -14.45357 -14.34905 -14.29982 -14.17314 -13.86175 -13.32815 -13.17119 -13.09157 -12.91736 -12.74186 -12.54114 -12.35298 -12.26153 -12.14131 -11.88393 -11.85877 -11.82688 -11.75453 -11.63491 -11.27406 -11.06324 -10.98711 -10.78290 -9.82540 -9.65467 -9.33645 -8.02241 -5.35567 1.35806 1.37376 1.41280 1.45058 1.48597 1.76794 2.06264 2.48815 2.72567 3.29142 3.35051 3.42006 3.55595 3.80631 3.83330 3.87828 3.90554 3.91322 3.94519 4.04232 4.09924 4.25925 4.27533 4.32221 4.40419 4.48798 4.53171 4.56502 4.58581 4.59281 4.76508 4.79867 4.84846 4.91252 4.93067 5.01671 5.02828 5.11854 5.17499 5.20802 5.30065 5.36140 5.55042 5.76092 6.16599 6.21215 6.23905 6.35282 6.95234 7.06734 7.07538 7.82991 8.04302 9.19272 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019982 B = 0.002485 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.952506 B =11262.834368 C =11503.566454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.180 3.820 3 H 0.056 0.944 4 N -0.746 5.746 5 C -0.229 4.229 6 H 0.057 0.943 7 C -0.065 4.065 8 N -0.984 5.984 9 Si 0.957 3.043 10 H -0.279 1.279 11 H -0.295 1.295 12 H -0.254 1.254 13 C 0.092 3.908 14 H 0.052 0.948 15 C 0.092 3.908 16 N -0.613 5.613 17 C 0.495 3.505 18 O -0.577 6.577 19 C 0.091 3.909 20 N -0.586 5.586 21 C 0.108 3.892 22 C -0.136 4.136 23 C -0.114 4.114 24 C -0.132 4.132 25 C 0.512 3.488 26 O -0.603 6.603 27 C 0.072 3.928 28 C 0.037 3.963 29 O -0.383 6.383 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.368 0.632 34 H 0.258 0.742 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.149 0.851 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.088 0.912 48 H 0.129 0.871 49 H 0.058 0.942 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 -7.627 33.013 34.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.072 3.928 3 H 0.074 0.926 4 N -0.390 5.390 5 C -0.360 4.360 6 H 0.075 0.925 7 C -0.257 4.257 8 N -0.635 5.635 9 Si 0.785 3.215 10 H -0.206 1.206 11 H -0.222 1.222 12 H -0.178 1.178 13 C 0.033 3.967 14 H 0.070 0.930 15 C -0.032 4.032 16 N -0.347 5.347 17 C 0.284 3.716 18 O -0.456 6.456 19 C -0.036 4.036 20 N -0.317 5.317 21 C -0.013 4.013 22 C -0.174 4.174 23 C -0.151 4.151 24 C -0.172 4.172 25 C 0.302 3.698 26 O -0.485 6.485 27 C -0.050 4.050 28 C -0.040 4.040 29 O -0.302 6.302 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.202 0.798 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.167 0.833 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.129 0.871 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.127 0.873 47 H 0.107 0.893 48 H 0.147 0.853 49 H 0.076 0.924 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.480 -6.948 32.771 33.945 hybrid contribution 0.152 -0.323 -0.955 1.019 sum 5.632 -7.270 31.816 33.118 Atomic orbital electron populations 1.22203 0.96661 1.01714 1.00416 1.20364 0.93956 0.94559 0.83946 0.92597 1.42669 1.79838 1.09756 1.06702 1.19032 1.35172 0.94459 0.87307 0.92506 1.25492 1.02370 1.02669 0.95120 1.69889 1.54730 1.37732 1.01139 0.85369 0.77648 0.80652 0.77850 1.20572 1.22212 1.17830 1.22525 0.96467 0.83888 0.93828 0.93035 1.22160 1.01943 0.95175 0.83889 1.48284 1.54335 1.14043 1.18059 1.21843 0.76843 0.88196 0.84741 1.90676 1.54624 1.19803 1.80529 1.21544 1.00872 0.94022 0.87164 1.47119 1.08303 1.47007 1.29223 1.21760 0.76809 1.00892 1.01886 1.21930 1.02420 0.97162 0.95859 1.21660 0.92207 1.04247 0.97017 1.21700 0.98235 0.99038 0.98196 1.20892 0.87057 0.79716 0.82103 1.90683 1.16828 1.65839 1.75193 1.22762 1.02087 0.79708 1.00441 1.23280 1.00092 0.95841 0.84745 1.88052 1.68111 1.25465 1.48596 0.92469 0.91354 0.94768 0.79839 0.93363 0.89630 0.89989 0.86244 0.83303 0.88100 0.91374 0.92803 0.87125 0.88580 0.89587 0.88609 0.87276 0.89332 0.85277 0.92394 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.06 71.98 0.65 -4.72 16 2 C 0.18 7.03 2.77 44.99 0.12 7.15 16 3 H 0.06 2.30 8.08 -2.39 -0.02 2.28 16 4 N -0.75 -35.78 4.91 -322.93 -1.59 -37.37 16 5 C -0.23 -13.30 10.41 84.03 0.87 -12.42 16 6 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 7 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 8 N -0.98 -64.07 13.97 21.65 0.30 -63.77 16 9 Si 0.96 46.49 27.74 68.60 1.90 48.39 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 13 C 0.09 2.90 2.60 30.69 0.08 2.98 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 15 C 0.09 2.58 5.82 86.35 0.50 3.09 16 16 N -0.61 -14.02 3.02 -817.35 -2.47 -16.48 16 17 C 0.50 12.36 7.77 87.66 0.68 13.04 16 18 O -0.58 -19.63 15.89 -3.03 -0.05 -19.67 16 19 C 0.09 1.47 4.07 85.64 0.35 1.82 16 20 N -0.59 -10.18 2.30 -830.62 -1.91 -12.10 16 21 C 0.11 1.16 6.32 86.55 0.55 1.70 16 22 C -0.14 -1.21 6.03 30.75 0.19 -1.02 16 23 C -0.11 -0.80 6.03 30.74 0.19 -0.61 16 24 C -0.13 -1.82 6.03 29.71 0.18 -1.64 16 25 C 0.51 11.14 7.44 87.71 0.65 11.79 16 26 O -0.60 -18.37 16.18 -3.04 -0.05 -18.42 16 27 C 0.07 1.04 6.54 86.36 0.56 1.60 16 28 C 0.04 0.65 6.98 72.08 0.50 1.16 16 29 O -0.38 -10.92 9.26 -148.98 -1.38 -12.30 16 30 H 0.06 2.03 7.56 -2.39 -0.02 2.02 16 31 H 0.07 2.01 6.42 -2.39 -0.02 2.00 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.37 17.21 5.45 -92.70 -0.51 16.71 16 34 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.09 2.32 6.28 -2.39 -0.01 2.30 16 36 H 0.08 2.61 7.08 -2.38 -0.02 2.60 16 37 H 0.12 1.97 7.01 -2.39 -0.02 1.95 16 38 H 0.15 1.09 7.53 -2.39 -0.02 1.07 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 41 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 42 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.09 0.39 8.13 -2.39 -0.02 0.37 16 45 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.13 0.84 6.06 -2.39 -0.01 0.82 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -86.62 390.98 1.69 -84.94 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.38 Total: 26.33 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.55 Total: 20.46 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -5.66 Total: -129.72 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -1.48 Total: -50.39 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.39 kcal Total: -86.62 1.69 -84.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700603348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.464 kcal (2) G-P(sol) polarization free energy of solvation -86.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds