Wall clock time and date at job start Tue Mar 31 2020 23:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47341 * 2 1 4 4 N 1.46499 * 109.46768 * 239.99934 * 2 1 3 5 5 C 1.36935 * 120.00276 * 85.00531 * 4 2 1 6 6 H 1.08002 * 119.99664 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00086 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99693 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00197 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47063 * 90.00163 * 9 7 5 11 11 H 1.48495 * 109.47421 * 210.00022 * 9 7 5 12 12 H 1.48497 * 109.47263 * 330.00224 * 9 7 5 13 13 C 1.52998 * 109.47141 * 120.00200 * 2 1 3 14 14 H 1.09001 * 109.55475 * 299.87332 * 13 2 1 15 15 C 1.53289 * 109.51400 * 179.74321 * 13 2 1 16 16 N 1.47157 * 108.38491 * 187.77009 * 15 13 2 17 17 C 1.34773 * 120.98280 * 230.50820 * 16 15 13 18 18 O 1.21278 * 120.00191 * 0.03280 * 17 16 15 19 19 C 1.50703 * 119.99881 * 180.02562 * 17 16 15 20 20 N 1.46508 * 109.46977 * 180.02562 * 19 17 16 21 21 C 1.45754 * 117.94458 * 269.74123 * 20 19 17 22 22 C 1.53097 * 110.38273 * 160.74403 * 21 20 19 23 23 C 1.53346 * 108.52848 * 51.11520 * 22 21 20 24 24 C 1.53061 * 108.42611 * 292.30674 * 23 22 21 25 25 C 1.33356 * 117.94516 * 90.00453 * 20 19 17 26 26 O 1.21279 * 118.24455 * 2.19842 * 25 20 19 27 27 C 1.47155 * 118.03509 * 50.54082 * 16 15 13 28 28 C 1.53295 * 108.37983 * 309.45990 * 27 16 15 29 29 O 1.42962 * 109.51459 * 59.99373 * 13 2 1 30 30 H 1.09004 * 109.46860 * 300.00250 * 1 2 3 31 31 H 1.08994 * 109.47054 * 59.99856 * 1 2 3 32 32 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 33 33 H 0.97007 * 119.99882 * 265.00264 * 4 2 1 34 34 H 0.96996 * 119.99791 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.68372 * 68.05116 * 15 13 2 36 36 H 1.08996 * 109.71499 * 307.51211 * 15 13 2 37 37 H 1.08993 * 109.47438 * 300.00916 * 19 17 16 38 38 H 1.09005 * 109.46654 * 60.00940 * 19 17 16 39 39 H 1.08999 * 109.29999 * 281.23576 * 21 20 19 40 40 H 1.08998 * 109.30113 * 40.61186 * 21 20 19 41 41 H 1.08998 * 109.80969 * 291.32409 * 22 21 20 42 42 H 1.09001 * 109.67740 * 170.82257 * 22 21 20 43 43 H 1.09002 * 109.67620 * 172.57348 * 23 22 21 44 44 H 1.08999 * 109.70438 * 52.06425 * 23 22 21 45 45 H 1.09003 * 109.40160 * 288.77494 * 24 23 22 46 46 H 1.09002 * 109.40575 * 169.03030 * 24 23 22 47 47 H 1.08993 * 109.68045 * 189.74357 * 27 16 15 48 48 H 1.08992 * 109.71294 * 69.19912 * 27 16 15 49 49 H 1.09000 * 109.51562 * 292.38058 * 28 27 16 50 50 H 1.09002 * 109.55247 * 172.24903 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1492 -0.0076 -2.3758 6 1 1.8920 1.0403 -2.4243 7 6 2.6113 -0.6621 -3.5093 8 7 2.7366 -0.0056 -4.6432 9 14 3.0553 -2.4746 -3.4254 10 1 1.8578 -3.2929 -3.7443 11 1 4.1302 -2.7668 -4.4074 12 1 3.5309 -2.8050 -2.0580 13 6 2.0400 -0.7213 1.2492 14 1 1.6793 -0.2072 2.1401 15 6 3.5729 -0.7275 1.2470 16 7 4.0352 -1.5830 2.3514 17 6 4.9544 -1.1419 3.2328 18 8 5.4129 -0.0245 3.1227 19 6 5.4125 -2.0371 4.3552 20 7 6.4060 -1.3312 5.1684 21 6 7.8100 -1.4660 4.8009 22 6 8.6336 -0.3319 5.4166 23 6 8.3209 -0.2611 6.9162 24 6 6.8717 0.2008 7.0869 25 6 5.9694 -0.6099 6.2016 26 8 4.7799 -0.6083 6.4386 27 6 3.4647 -2.9348 2.4646 28 6 1.9371 -2.8210 2.4075 29 8 1.5639 -2.0693 1.2502 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1526 34 1 3.0591 -0.4630 -5.4354 35 1 3.9444 0.2874 1.3887 36 1 3.9376 -1.1228 0.2989 37 1 4.5588 -2.3057 4.9773 38 1 5.8584 -2.9410 3.9401 39 1 8.1856 -2.4245 5.1591 40 1 7.9034 -1.4288 3.7156 41 1 8.3713 0.6142 4.9433 42 1 9.6959 -0.5302 5.2736 43 1 8.9919 0.4502 7.3978 44 1 8.4474 -1.2464 7.3649 45 1 6.7931 1.2539 6.8168 46 1 6.5705 0.0714 8.1265 47 1 3.7644 -3.3814 3.4126 48 1 3.8179 -3.5531 1.6395 49 1 1.5760 -2.3145 3.3026 50 1 1.4989 -3.8175 2.3512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700603349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:49 Heat of formation + Delta-G solvation = -89.114497 kcal Electronic energy + Delta-G solvation = -31241.333598 eV Core-core repulsion = 27076.392612 eV Total energy + Delta-G solvation = -4164.940986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09286 -40.00815 -38.33035 -36.73733 -35.66754 -34.61218 -34.38924 -32.30082 -30.60163 -30.04406 -29.02049 -28.84756 -27.01335 -24.81236 -24.10981 -23.33397 -22.87506 -22.08082 -19.84507 -19.47454 -18.86220 -17.84809 -17.46624 -17.09839 -16.85021 -16.31866 -15.97852 -15.50156 -15.33773 -14.95227 -14.78445 -14.55500 -14.33217 -14.32460 -13.88392 -13.73886 -13.57272 -13.40931 -13.33296 -12.89223 -12.46286 -12.35013 -12.20308 -12.04387 -11.95357 -11.68492 -11.61604 -11.38145 -11.36525 -11.28265 -10.91972 -10.85216 -10.61731 -10.33615 -10.10451 -9.97791 -9.94602 -9.92546 -9.54178 -8.97021 -8.93187 -8.48238 -7.22596 -5.73853 -3.08555 2.27541 2.53230 2.58309 3.00084 3.39613 3.44410 3.47323 3.85370 4.19347 4.28778 4.33281 4.36734 4.41377 4.62444 4.70255 4.76051 4.84069 4.93491 5.00936 5.04629 5.05176 5.15220 5.19581 5.26390 5.32182 5.34952 5.41857 5.47125 5.53160 5.55783 5.59600 5.62984 5.69436 5.79449 5.87098 5.96204 6.14760 6.23162 6.32807 6.43086 6.51599 6.73906 7.07081 7.12196 7.29054 7.34189 7.87855 8.03258 8.08650 8.45553 9.25041 9.97097 10.18643 11.44599 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002923 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.672180 B = 9578.064501 C =10138.478882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.189 3.811 3 H 0.069 0.931 4 N -0.742 5.742 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.884 3.116 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.075 3.925 14 H 0.060 0.940 15 C 0.086 3.914 16 N -0.613 5.613 17 C 0.501 3.499 18 O -0.531 6.531 19 C 0.089 3.911 20 N -0.586 5.586 21 C 0.115 3.885 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.132 4.132 25 C 0.523 3.477 26 O -0.554 6.554 27 C 0.070 3.930 28 C 0.047 3.953 29 O -0.363 6.363 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.367 0.633 34 H 0.259 0.741 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.053 0.947 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.370 -7.272 25.404 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 H 0.086 0.914 4 N -0.386 5.386 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.583 5.583 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.204 1.204 13 C 0.016 3.984 14 H 0.078 0.922 15 C -0.036 4.036 16 N -0.348 5.348 17 C 0.287 3.713 18 O -0.407 6.407 19 C -0.038 4.038 20 N -0.318 5.318 21 C -0.007 4.007 22 C -0.174 4.174 23 C -0.161 4.161 24 C -0.172 4.172 25 C 0.312 3.688 26 O -0.432 6.432 27 C -0.054 4.054 28 C -0.031 4.031 29 O -0.281 6.281 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.200 0.800 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.949 -6.538 25.162 27.836 hybrid contribution 0.484 -1.334 -0.053 1.420 sum 10.433 -7.872 25.109 28.307 Atomic orbital electron populations 1.22314 0.97942 1.01602 1.00208 1.20233 0.92980 0.94878 0.84050 0.91370 1.42730 1.79346 1.09757 1.06781 1.19085 1.36753 0.95569 0.85630 0.89179 1.24645 1.01548 0.97394 0.95536 1.69705 1.52835 1.35524 1.00205 0.86543 0.78049 0.87050 0.76846 1.21119 1.21992 1.20352 1.22979 0.92234 0.83305 0.99931 0.92166 1.22413 0.94958 0.96834 0.89372 1.48239 1.41588 1.15661 1.29354 1.21033 0.79182 0.88278 0.82785 1.90694 1.55959 1.20290 1.73712 1.21387 0.95160 0.94678 0.92571 1.46912 1.07091 1.49372 1.28415 1.21476 0.79486 0.98888 1.00896 1.21904 1.00299 0.99473 0.95731 1.21666 0.95468 1.02400 0.96537 1.21638 0.94495 1.00836 1.00200 1.20175 0.89248 0.78857 0.80491 1.90716 1.17243 1.63390 1.71834 1.22498 0.95746 0.84042 1.03070 1.22903 0.92841 0.97628 0.89777 1.88064 1.75261 1.23873 1.40952 0.94483 0.92251 0.92634 0.79976 0.93136 0.88310 0.89091 0.86561 0.87573 0.91419 0.90450 0.90361 0.89632 0.90415 0.91115 0.88033 0.88201 0.89343 0.90083 0.92824 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.35 37.16 0.35 -2.59 16 2 C 0.19 3.69 2.74 -67.93 -0.19 3.50 16 3 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 4 N -0.74 -17.50 4.09 -53.43 -0.22 -17.71 16 5 C -0.24 -6.74 10.41 -15.06 -0.16 -6.89 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 9 Si 0.88 22.35 27.73 -169.99 -4.71 17.63 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 13 C 0.07 1.25 2.53 -26.58 -0.07 1.18 16 14 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 15 C 0.09 1.47 5.86 -3.53 -0.02 1.45 16 16 N -0.61 -8.68 3.02 -172.28 -0.52 -9.20 16 17 C 0.50 7.25 7.77 -10.99 -0.09 7.16 16 18 O -0.53 -9.67 15.89 5.56 0.09 -9.58 16 19 C 0.09 0.92 4.08 -5.19 -0.02 0.90 16 20 N -0.59 -6.10 2.30 -176.22 -0.41 -6.50 16 21 C 0.12 0.85 6.33 -4.39 -0.03 0.82 16 22 C -0.14 -0.84 6.03 -26.50 -0.16 -1.00 16 23 C -0.12 -0.66 6.03 -26.52 -0.16 -0.82 16 24 C -0.13 -1.06 6.03 -28.11 -0.17 -1.23 16 25 C 0.52 6.26 7.44 -11.87 -0.09 6.17 16 26 O -0.55 -8.78 16.18 5.56 0.09 -8.69 16 27 C 0.07 0.74 6.54 -3.53 -0.02 0.72 16 28 C 0.05 0.53 6.98 37.31 0.26 0.80 16 29 O -0.36 -5.84 9.22 -35.23 -0.32 -6.16 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.03 7.68 -51.93 -0.40 0.63 16 33 H 0.37 8.69 5.06 -40.82 -0.21 8.49 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.10 1.81 7.08 -51.93 -0.37 1.45 16 36 H 0.09 1.76 7.26 -51.93 -0.38 1.39 16 37 H 0.12 1.21 6.65 -51.93 -0.35 0.86 16 38 H 0.11 0.74 7.89 -51.93 -0.41 0.33 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.63 6.05 -51.93 -0.31 0.32 16 48 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -37.21 392.78 -8.31 -45.52 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.34 Total: 7.27 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.65 Total: 10.21 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.37 Total: -62.12 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.15 Total: -24.43 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.21 -8.31 -45.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700603349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.595 kcal (2) G-P(sol) polarization free energy of solvation -37.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds