Wall clock time and date at job start Tue Mar 31 2020 23:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47341 * 2 1 4 4 N 1.46499 * 109.46768 * 239.99934 * 2 1 3 5 5 C 1.36935 * 120.00276 * 85.00531 * 4 2 1 6 6 H 1.08002 * 119.99664 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00086 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99693 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00197 * 359.97438 * 7 5 4 10 10 H 1.48508 * 109.47063 * 90.00163 * 9 7 5 11 11 H 1.48495 * 109.47421 * 210.00022 * 9 7 5 12 12 H 1.48497 * 109.47263 * 330.00224 * 9 7 5 13 13 C 1.52998 * 109.47141 * 120.00200 * 2 1 3 14 14 H 1.09001 * 109.55475 * 299.87332 * 13 2 1 15 15 C 1.53289 * 109.51400 * 179.74321 * 13 2 1 16 16 N 1.47157 * 108.38491 * 187.77009 * 15 13 2 17 17 C 1.34773 * 120.98280 * 230.50820 * 16 15 13 18 18 O 1.21278 * 120.00191 * 0.03280 * 17 16 15 19 19 C 1.50703 * 119.99881 * 180.02562 * 17 16 15 20 20 N 1.46508 * 109.46977 * 180.02562 * 19 17 16 21 21 C 1.45754 * 117.94458 * 269.74123 * 20 19 17 22 22 C 1.53097 * 110.38273 * 160.74403 * 21 20 19 23 23 C 1.53346 * 108.52848 * 51.11520 * 22 21 20 24 24 C 1.53061 * 108.42611 * 292.30674 * 23 22 21 25 25 C 1.33356 * 117.94516 * 90.00453 * 20 19 17 26 26 O 1.21279 * 118.24455 * 2.19842 * 25 20 19 27 27 C 1.47155 * 118.03509 * 50.54082 * 16 15 13 28 28 C 1.53295 * 108.37983 * 309.45990 * 27 16 15 29 29 O 1.42962 * 109.51459 * 59.99373 * 13 2 1 30 30 H 1.09004 * 109.46860 * 300.00250 * 1 2 3 31 31 H 1.08994 * 109.47054 * 59.99856 * 1 2 3 32 32 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 33 33 H 0.97007 * 119.99882 * 265.00264 * 4 2 1 34 34 H 0.96996 * 119.99791 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.68372 * 68.05116 * 15 13 2 36 36 H 1.08996 * 109.71499 * 307.51211 * 15 13 2 37 37 H 1.08993 * 109.47438 * 300.00916 * 19 17 16 38 38 H 1.09005 * 109.46654 * 60.00940 * 19 17 16 39 39 H 1.08999 * 109.29999 * 281.23576 * 21 20 19 40 40 H 1.08998 * 109.30113 * 40.61186 * 21 20 19 41 41 H 1.08998 * 109.80969 * 291.32409 * 22 21 20 42 42 H 1.09001 * 109.67740 * 170.82257 * 22 21 20 43 43 H 1.09002 * 109.67620 * 172.57348 * 23 22 21 44 44 H 1.08999 * 109.70438 * 52.06425 * 23 22 21 45 45 H 1.09003 * 109.40160 * 288.77494 * 24 23 22 46 46 H 1.09002 * 109.40575 * 169.03030 * 24 23 22 47 47 H 1.08993 * 109.68045 * 189.74357 * 27 16 15 48 48 H 1.08992 * 109.71294 * 69.19912 * 27 16 15 49 49 H 1.09000 * 109.51562 * 292.38058 * 28 27 16 50 50 H 1.09002 * 109.55247 * 172.24903 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1492 -0.0076 -2.3758 6 1 1.8920 1.0403 -2.4243 7 6 2.6113 -0.6621 -3.5093 8 7 2.7366 -0.0056 -4.6432 9 14 3.0553 -2.4746 -3.4254 10 1 1.8578 -3.2929 -3.7443 11 1 4.1302 -2.7668 -4.4074 12 1 3.5309 -2.8050 -2.0580 13 6 2.0400 -0.7213 1.2492 14 1 1.6793 -0.2072 2.1401 15 6 3.5729 -0.7275 1.2470 16 7 4.0352 -1.5830 2.3514 17 6 4.9544 -1.1419 3.2328 18 8 5.4129 -0.0245 3.1227 19 6 5.4125 -2.0371 4.3552 20 7 6.4060 -1.3312 5.1684 21 6 7.8100 -1.4660 4.8009 22 6 8.6336 -0.3319 5.4166 23 6 8.3209 -0.2611 6.9162 24 6 6.8717 0.2008 7.0869 25 6 5.9694 -0.6099 6.2016 26 8 4.7799 -0.6083 6.4386 27 6 3.4647 -2.9348 2.4646 28 6 1.9371 -2.8210 2.4075 29 8 1.5639 -2.0693 1.2502 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.2489 -1.6319 -1.1526 34 1 3.0591 -0.4630 -5.4354 35 1 3.9444 0.2874 1.3887 36 1 3.9376 -1.1228 0.2989 37 1 4.5588 -2.3057 4.9773 38 1 5.8584 -2.9410 3.9401 39 1 8.1856 -2.4245 5.1591 40 1 7.9034 -1.4288 3.7156 41 1 8.3713 0.6142 4.9433 42 1 9.6959 -0.5302 5.2736 43 1 8.9919 0.4502 7.3978 44 1 8.4474 -1.2464 7.3649 45 1 6.7931 1.2539 6.8168 46 1 6.5705 0.0714 8.1265 47 1 3.7644 -3.3814 3.4126 48 1 3.8179 -3.5531 1.6395 49 1 1.5760 -2.3145 3.3026 50 1 1.4989 -3.8175 2.3512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700603349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:49 Heat of formation + Delta-G solvation = -116.093325 kcal Electronic energy + Delta-G solvation = -31242.503487 eV Core-core repulsion = 27076.392612 eV Total energy + Delta-G solvation = -4166.110875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01133 -41.07025 -39.54728 -37.52030 -37.27326 -35.84991 -35.09129 -34.24452 -32.13145 -30.77097 -30.57446 -29.84640 -28.08463 -25.77797 -25.32164 -24.87198 -23.85434 -23.04277 -21.42946 -20.49772 -19.83182 -19.58894 -18.56885 -18.03670 -17.66148 -17.56861 -16.95172 -16.67660 -16.47636 -16.18432 -16.09190 -15.91827 -15.28496 -15.18774 -15.06678 -14.74428 -14.61075 -14.46706 -14.34878 -14.26462 -14.18829 -13.73368 -13.37125 -13.19246 -13.04681 -12.84848 -12.74277 -12.58340 -12.51815 -12.26317 -12.12641 -11.88618 -11.86119 -11.82321 -11.76684 -11.63228 -11.23788 -11.08626 -11.00888 -10.78381 -9.82398 -9.69280 -9.28491 -8.00856 -5.33205 1.34778 1.36665 1.40845 1.45601 1.47823 1.76973 2.06213 2.49404 2.70034 3.31036 3.36792 3.53290 3.54802 3.71916 3.79982 3.86883 3.87736 3.90971 3.95940 4.07843 4.11124 4.17082 4.27160 4.30970 4.44313 4.48256 4.52995 4.57062 4.57805 4.70752 4.74707 4.79631 4.84170 4.90862 4.93902 4.99221 5.01981 5.11274 5.15054 5.19781 5.29811 5.35748 5.52684 5.77845 6.15237 6.22716 6.24778 6.35252 6.95144 7.06376 7.09413 7.84725 8.06869 9.20951 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002923 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.672180 B = 9578.064501 C =10138.478882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.179 3.821 3 H 0.056 0.944 4 N -0.741 5.741 5 C -0.224 4.224 6 H 0.057 0.943 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.955 3.045 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.253 1.253 13 C 0.092 3.908 14 H 0.072 0.928 15 C 0.093 3.907 16 N -0.613 5.613 17 C 0.494 3.506 18 O -0.579 6.579 19 C 0.092 3.908 20 N -0.586 5.586 21 C 0.108 3.892 22 C -0.136 4.136 23 C -0.113 4.113 24 C -0.132 4.132 25 C 0.511 3.489 26 O -0.602 6.602 27 C 0.066 3.934 28 C 0.039 3.961 29 O -0.383 6.383 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.369 0.631 34 H 0.257 0.743 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.149 0.851 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.130 0.870 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.549 -10.537 28.389 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.071 3.929 3 H 0.074 0.926 4 N -0.385 5.385 5 C -0.355 4.355 6 H 0.075 0.925 7 C -0.256 4.256 8 N -0.636 5.636 9 Si 0.783 3.217 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.178 1.178 13 C 0.033 3.967 14 H 0.090 0.910 15 C -0.031 4.031 16 N -0.348 5.348 17 C 0.282 3.718 18 O -0.458 6.458 19 C -0.034 4.034 20 N -0.317 5.317 21 C -0.014 4.014 22 C -0.174 4.174 23 C -0.151 4.151 24 C -0.171 4.171 25 C 0.302 3.698 26 O -0.484 6.484 27 C -0.055 4.055 28 C -0.038 4.038 29 O -0.301 6.301 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.203 0.797 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.148 0.852 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.135 -9.843 28.206 31.882 hybrid contribution 0.088 -0.236 -0.925 0.959 sum 11.223 -10.080 27.280 31.173 Atomic orbital electron populations 1.22153 0.96460 1.01721 1.00604 1.20425 0.93926 0.94550 0.84035 0.92574 1.42642 1.79618 1.09730 1.06539 1.19029 1.34809 0.94397 0.87271 0.92530 1.25449 1.02561 1.02447 0.95148 1.69887 1.54971 1.37668 1.01117 0.85405 0.77589 0.80957 0.77793 1.20625 1.22428 1.17794 1.22576 0.91613 0.84237 0.98310 0.90983 1.22045 0.95287 0.96172 0.89561 1.48336 1.41512 1.16682 1.28222 1.21901 0.78386 0.88207 0.83275 1.90672 1.57601 1.22570 1.74991 1.21535 0.95929 0.94903 0.91068 1.47126 1.08356 1.48579 1.27611 1.21759 0.78041 1.01039 1.00526 1.21929 1.01573 0.97840 0.96023 1.21656 0.93605 1.03719 0.96098 1.21699 0.95763 0.99790 0.99892 1.20906 0.89150 0.78701 0.81050 1.90678 1.19315 1.65109 1.73345 1.22806 0.95028 0.82104 1.05607 1.23265 0.93626 0.98538 0.88372 1.88018 1.75536 1.23195 1.43375 0.91465 0.94467 0.92538 0.79706 0.93457 0.90693 0.91603 0.86097 0.83341 0.88003 0.91548 0.92923 0.87048 0.88525 0.89504 0.88680 0.87178 0.85177 0.89528 0.92173 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.35 71.98 0.67 -4.71 16 2 C 0.18 7.06 2.74 44.99 0.12 7.18 16 3 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 4 N -0.74 -35.20 4.09 -322.94 -1.32 -36.52 16 5 C -0.22 -12.95 10.41 84.03 0.87 -12.08 16 6 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.99 -64.29 13.97 21.65 0.30 -63.99 16 9 Si 0.95 46.53 27.73 68.60 1.90 48.43 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 12 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 13 C 0.09 3.01 2.53 30.69 0.08 3.08 16 14 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.09 3.19 5.86 86.35 0.51 3.70 16 16 N -0.61 -16.44 3.02 -817.38 -2.47 -18.91 16 17 C 0.49 13.82 7.77 87.66 0.68 14.50 16 18 O -0.58 -21.58 15.89 -3.02 -0.05 -21.62 16 19 C 0.09 1.68 4.08 85.63 0.35 2.02 16 20 N -0.59 -11.09 2.30 -830.62 -1.91 -13.01 16 21 C 0.11 1.31 6.33 86.55 0.55 1.85 16 22 C -0.14 -1.36 6.03 30.74 0.19 -1.18 16 23 C -0.11 -0.89 6.03 30.73 0.19 -0.71 16 24 C -0.13 -1.95 6.03 29.70 0.18 -1.78 16 25 C 0.51 11.76 7.44 87.71 0.65 12.42 16 26 O -0.60 -18.98 16.18 -3.03 -0.05 -19.03 16 27 C 0.07 1.17 6.54 86.35 0.56 1.73 16 28 C 0.04 0.75 6.98 72.08 0.50 1.25 16 29 O -0.38 -11.38 9.22 -148.98 -1.37 -12.75 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 2.02 7.68 -2.39 -0.02 2.00 16 33 H 0.37 17.16 5.06 -92.70 -0.47 16.69 16 34 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.07 2.90 7.08 -2.39 -0.02 2.88 16 36 H 0.07 2.58 7.26 -2.39 -0.02 2.56 16 37 H 0.12 2.16 6.65 -2.39 -0.02 2.14 16 38 H 0.15 1.40 7.89 -2.38 -0.02 1.38 16 39 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 41 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 42 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.46 8.13 -2.39 -0.02 0.44 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.13 1.21 6.05 -2.39 -0.01 1.19 16 48 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -86.25 392.78 2.01 -84.24 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.41 Total: 29.30 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 6.57 Total: 23.86 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -5.40 Total: -132.42 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.47 Total: -53.41 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -86.25 2.01 -84.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700603349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.850 kcal (2) G-P(sol) polarization free energy of solvation -86.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds