Wall clock time and date at job start Tue Mar 31 2020 23:21:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09002 * 109.46922 * 2 1
4 4 N 1.46497 * 109.47322 * 120.00216 * 2 1 3
5 5 C 1.36943 * 119.99769 * 274.99774 * 4 2 1
6 6 H 1.08003 * 119.99763 * 0.02562 * 5 4 2
7 7 C 1.38809 * 119.99898 * 179.97438 * 5 4 2
8 8 N 1.31618 * 119.99959 * 179.97438 * 7 5 4
9 9 Si 1.86806 * 119.99867 * 0.02562 * 7 5 4
10 10 H 1.48495 * 109.47035 * 90.00204 * 9 7 5
11 11 H 1.48502 * 109.47028 * 209.99833 * 9 7 5
12 12 H 1.48502 * 109.47190 * 329.99666 * 9 7 5
13 13 C 1.53001 * 109.46809 * 240.00309 * 2 1 3
14 14 H 1.09002 * 109.51506 * 64.99921 * 13 2 1
15 15 C 1.53300 * 109.50930 * 185.10101 * 13 2 1
16 16 N 1.47156 * 108.37873 * 172.27631 * 15 13 2
17 17 C 1.34776 * 120.97789 * 129.49019 * 16 15 13
18 18 O 1.21274 * 120.00482 * 359.97438 * 17 16 15
19 19 C 1.50707 * 119.99615 * 179.97438 * 17 16 15
20 20 C 1.53002 * 109.46910 * 179.97438 * 19 17 16
21 21 N 1.46494 * 109.46977 * 179.97438 * 20 19 17
22 22 C 1.46767 * 124.34946 * 90.00341 * 21 20 19
23 23 C 1.54488 * 105.47235 * 197.01535 * 22 21 20
24 24 C 1.54624 * 101.76243 * 334.58316 * 23 22 21
25 25 C 1.34423 * 124.35368 * 269.69903 * 21 20 19
26 26 O 1.21281 * 124.93648 * 359.57341 * 25 21 20
27 27 C 1.47151 * 118.03773 * 309.45894 * 16 15 13
28 28 C 1.53292 * 108.38215 * 50.54121 * 27 16 15
29 29 O 1.42959 * 109.22441 * 307.69471 * 28 27 16
30 30 H 1.08998 * 109.46831 * 299.99878 * 1 2 3
31 31 H 1.09000 * 109.47040 * 59.99773 * 1 2 3
32 32 H 1.09002 * 109.46922 * 179.97438 * 1 2 3
33 33 H 0.97001 * 120.00284 * 94.99861 * 4 2 1
34 34 H 0.97003 * 119.99906 * 179.97438 * 8 7 5
35 35 H 1.08992 * 109.67727 * 291.99267 * 15 13 2
36 36 H 1.08994 * 109.68217 * 52.51804 * 15 13 2
37 37 H 1.08998 * 109.46968 * 299.99760 * 19 17 16
38 38 H 1.08999 * 109.47271 * 59.99699 * 19 17 16
39 39 H 1.08998 * 109.47358 * 299.99825 * 20 19 17
40 40 H 1.08999 * 109.47151 * 59.99930 * 20 19 17
41 41 H 1.09000 * 110.24384 * 316.01345 * 22 21 20
42 42 H 1.08997 * 110.24813 * 78.01360 * 22 21 20
43 43 H 1.09002 * 110.96619 * 92.70462 * 23 22 21
44 44 H 1.09000 * 110.96746 * 216.45980 * 23 22 21
45 45 H 1.09003 * 110.48394 * 143.47989 * 24 23 22
46 46 H 1.09000 * 110.48321 * 265.98219 * 24 23 22
47 47 H 1.09001 * 109.68225 * 170.26417 * 27 16 15
48 48 H 1.09000 * 109.68314 * 290.78206 * 27 16 15
49 49 H 1.09000 * 109.51207 * 67.61969 * 28 27 16
50 50 H 1.09001 * 109.51296 * 187.72254 * 28 27 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1493 -0.0075 2.3757
6 1 1.8920 1.0404 2.4243
7 6 2.6115 -0.6619 3.5092
8 7 2.7377 -0.0052 4.6428
9 14 3.0557 -2.4745 3.4252
10 1 4.4885 -2.6166 3.0620
11 1 2.8157 -3.1047 4.7483
12 1 2.2161 -3.1429 2.3989
13 6 2.0400 -0.7212 -1.2493
14 1 1.7520 -0.1588 -2.1375
15 6 3.5676 -0.8340 -1.1877
16 7 4.0149 -1.6887 -2.2989
17 6 4.9973 -1.2883 -3.1301
18 8 5.5263 -0.2090 -2.9683
19 6 5.4386 -2.1818 -4.2607
20 6 6.5578 -1.4952 -5.0462
21 7 6.9871 -2.3640 -6.1449
22 6 6.4060 -2.3433 -7.4925
23 6 6.8405 -3.6725 -8.1490
24 6 8.1339 -4.0018 -7.3682
25 6 7.9678 -3.2784 -6.0500
26 8 8.6223 -3.4939 -5.0520
27 6 3.3585 -2.9938 -2.4752
28 6 1.8411 -2.7758 -2.4741
29 8 1.4733 -2.0324 -1.3097
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 2.2491 -1.6318 1.1526
34 1 3.0604 -0.4627 5.4350
35 1 4.0129 0.1562 -1.2840
36 1 3.8648 -1.2795 -0.2384
37 1 5.8041 -3.1256 -3.8564
38 1 4.5945 -2.3729 -4.9233
39 1 6.1918 -0.5515 -5.4506
40 1 7.4019 -1.3037 -4.3838
41 1 5.3190 -2.2893 -7.4337
42 1 6.7963 -1.4977 -8.0586
43 1 6.0871 -4.4459 -7.9997
44 1 7.0498 -3.5335 -9.2097
45 1 8.2199 -5.0766 -7.2086
46 1 9.0072 -3.6251 -7.9006
47 1 3.6654 -3.4340 -3.4240
48 1 3.6351 -3.6576 -1.6561
49 1 1.5524 -2.2209 -3.3667
50 1 1.3346 -3.7410 -2.4657
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700614060.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:21:31
Heat of formation + Delta-G solvation = -89.691409 kcal
Electronic energy + Delta-G solvation = -30520.861063 eV
Core-core repulsion = 26355.895060 eV
Total energy + Delta-G solvation = -4164.966002 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.86955 -40.30781 -38.57019 -36.78059 -35.70476 -34.67208 -34.20644 -32.31203
-30.86923 -30.16998 -28.92443 -28.02089 -27.75588 -24.99876 -23.84331 -23.33052
-22.40808 -22.11980 -19.84098 -19.74428 -19.18659 -17.88599 -17.58538 -17.07885
-16.54830 -16.44582 -16.20535 -15.76832 -15.51515 -15.03412 -14.84290 -14.35846
-14.24997 -14.17458 -13.97067 -13.72864 -13.68929 -13.41169 -13.06642 -12.98229
-12.75666 -12.60407 -12.41877 -12.17948 -12.02105 -11.92895 -11.65001 -11.54234
-11.46705 -11.33114 -10.94418 -10.85661 -10.61080 -10.34355 -10.15685 -10.07823
-9.98105 -9.82677 -9.54551 -9.15513 -8.93959 -8.52271 -7.23598 -5.74007
-3.09175 2.20374 2.47175 2.50426 2.92107 3.41231 3.45766 3.48619
3.80782 3.89356 3.96642 4.28341 4.32867 4.52097 4.56187 4.62787
4.64462 4.66708 4.83313 4.94649 4.96655 5.00622 5.10317 5.13791
5.18017 5.20931 5.26449 5.32923 5.40676 5.44219 5.52990 5.54851
5.61262 5.62192 5.66458 5.86129 6.11300 6.12399 6.21138 6.29009
6.40181 6.48285 6.71884 6.72435 7.05559 7.26172 7.30010 7.80071
8.02060 8.03735 8.45131 9.24036 9.96235 10.16777 11.44261
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016935 B = 0.002564 C = 0.002425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1652.991337 B =10919.231806 C =11544.156389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.188 3.812
3 H 0.070 0.930
4 N -0.743 5.743
5 C -0.242 4.242
6 H 0.091 0.909
7 C 0.006 3.994
8 N -0.933 5.933
9 Si 0.878 3.122
10 H -0.285 1.285
11 H -0.292 1.292
12 H -0.273 1.273
13 C 0.075 3.925
14 H 0.060 0.940
15 C 0.084 3.916
16 N -0.614 5.614
17 C 0.519 3.481
18 O -0.538 6.538
19 C -0.155 4.155
20 C 0.142 3.858
21 N -0.622 5.622
22 C 0.099 3.901
23 C -0.132 4.132
24 C -0.156 4.156
25 C 0.513 3.487
26 O -0.527 6.527
27 C 0.070 3.930
28 C 0.048 3.952
29 O -0.363 6.363
30 H 0.058 0.942
31 H 0.035 0.965
32 H 0.055 0.945
33 H 0.366 0.634
34 H 0.259 0.741
35 H 0.102 0.898
36 H 0.090 0.910
37 H 0.097 0.903
38 H 0.094 0.906
39 H 0.089 0.911
40 H 0.093 0.907
41 H 0.079 0.921
42 H 0.074 0.926
43 H 0.083 0.917
44 H 0.091 0.909
45 H 0.102 0.898
46 H 0.104 0.896
47 H 0.089 0.911
48 H 0.080 0.920
49 H 0.051 0.949
50 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.213 -8.863 -31.240 32.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.078 3.922
3 H 0.087 0.913
4 N -0.387 5.387
5 C -0.372 4.372
6 H 0.109 0.891
7 C -0.190 4.190
8 N -0.581 5.581
9 Si 0.709 3.291
10 H -0.212 1.212
11 H -0.218 1.218
12 H -0.199 1.199
13 C 0.016 3.984
14 H 0.078 0.922
15 C -0.037 4.037
16 N -0.348 5.348
17 C 0.306 3.694
18 O -0.415 6.415
19 C -0.197 4.197
20 C 0.019 3.981
21 N -0.356 5.356
22 C -0.024 4.024
23 C -0.170 4.170
24 C -0.196 4.196
25 C 0.301 3.699
26 O -0.403 6.403
27 C -0.054 4.054
28 C -0.030 4.030
29 O -0.281 6.281
30 H 0.077 0.923
31 H 0.055 0.945
32 H 0.074 0.926
33 H 0.199 0.801
34 H 0.069 0.931
35 H 0.120 0.880
36 H 0.108 0.892
37 H 0.115 0.885
38 H 0.112 0.888
39 H 0.107 0.893
40 H 0.111 0.889
41 H 0.098 0.902
42 H 0.092 0.908
43 H 0.101 0.899
44 H 0.110 0.890
45 H 0.120 0.880
46 H 0.122 0.878
47 H 0.108 0.892
48 H 0.098 0.902
49 H 0.070 0.930
50 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 3.726 -8.233 -30.228 31.550
hybrid contribution 0.324 -1.383 -0.116 1.425
sum 4.050 -9.616 -30.344 32.088
Atomic orbital electron populations
1.22297 0.97942 1.01610 1.00118 1.20241 0.93026 0.94892 0.84032
0.91266 1.42769 1.79419 1.09593 1.06874 1.19067 1.36901 0.95480
0.85746 0.89126 1.24638 1.01435 0.97332 0.95548 1.69697 1.52632
1.35535 1.00249 0.86624 0.78488 0.87095 0.76919 1.21176 1.21813
1.19942 1.22985 0.91516 0.84050 0.99873 0.92186 1.22440 0.95009
0.97033 0.89264 1.48248 1.36782 1.19034 1.30750 1.20393 0.79152
0.87028 0.82787 1.90724 1.54828 1.22961 1.73000 1.22037 1.00413
1.00485 0.96720 1.21096 0.97541 0.91833 0.87597 1.48364 1.36880
1.38472 1.11897 1.22128 0.99308 0.98507 0.82424 1.22604 0.97071
0.96972 1.00336 1.22339 0.99910 1.02634 0.94727 1.20996 0.79108
0.79907 0.89918 1.90770 1.47950 1.66597 1.35010 1.22498 0.94402
0.85369 1.03120 1.22891 0.93149 0.97517 0.89460 1.88089 1.70921
1.27416 1.41712 0.92308 0.94550 0.92601 0.80072 0.93099 0.87982
0.89152 0.88514 0.88794 0.89280 0.88905 0.90214 0.90806 0.89873
0.89041 0.87965 0.87793 0.89248 0.90205 0.93042 0.87899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.83 9.30 37.16 0.35 -2.48 16
2 C 0.19 3.57 2.80 -67.93 -0.19 3.38 16
3 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16
4 N -0.74 -17.36 4.05 -53.42 -0.22 -17.58 16
5 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16
6 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16
7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16
8 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16
9 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16
10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16
12 H -0.27 -6.66 6.52 56.52 0.37 -6.29 16
13 C 0.07 1.18 2.57 -26.58 -0.07 1.12 16
14 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
15 C 0.08 1.40 5.82 -3.53 -0.02 1.38 16
16 N -0.61 -8.36 3.02 -172.28 -0.52 -8.88 16
17 C 0.52 7.05 7.71 -10.98 -0.08 6.96 16
18 O -0.54 -9.27 15.45 5.56 0.09 -9.18 16
19 C -0.16 -1.47 4.40 -27.88 -0.12 -1.59 16
20 C 0.14 1.39 5.23 -4.04 -0.02 1.36 16
21 N -0.62 -5.00 2.93 -172.41 -0.51 -5.51 16
22 C 0.10 0.41 7.35 -3.12 -0.02 0.38 16
23 C -0.13 -0.35 7.18 -25.10 -0.18 -0.53 16
24 C -0.16 -0.81 6.86 -26.75 -0.18 -1.00 16
25 C 0.51 5.10 8.02 -10.86 -0.09 5.01 16
26 O -0.53 -7.88 17.58 5.56 0.10 -7.78 16
27 C 0.07 0.72 6.54 -3.54 -0.02 0.70 16
28 C 0.05 0.50 6.98 37.31 0.26 0.77 16
29 O -0.36 -5.57 9.25 -35.23 -0.33 -5.89 16
30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
32 H 0.05 1.02 7.56 -51.93 -0.39 0.62 16
33 H 0.37 8.65 4.94 -40.82 -0.20 8.44 16
34 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16
35 H 0.10 1.81 7.08 -51.93 -0.37 1.44 16
36 H 0.09 1.75 6.93 -51.93 -0.36 1.39 16
37 H 0.10 0.95 8.02 -51.93 -0.42 0.53 16
38 H 0.09 0.63 7.66 -51.93 -0.40 0.23 16
39 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16
40 H 0.09 1.17 7.87 -51.93 -0.41 0.76 16
41 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16
42 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16
43 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16
44 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16
45 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16
46 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
47 H 0.09 0.63 6.05 -51.93 -0.31 0.31 16
48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
49 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
50 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16
LS Contribution 397.76 15.07 5.99 5.99
Total: -1.00 -37.11 397.76 -8.34 -45.46
By element:
Atomic # 1 Polarization: 14.10 SS G_CDS: -8.36 Total: 5.74 kcal
Atomic # 6 Polarization: 9.28 SS G_CDS: -0.65 Total: 8.62 kcal
Atomic # 7 Polarization: -60.26 SS G_CDS: -0.47 Total: -60.73 kcal
Atomic # 8 Polarization: -22.71 SS G_CDS: -0.14 Total: -22.86 kcal
Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -37.11 -8.34 -45.46 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700614060.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.236 kcal
(2) G-P(sol) polarization free energy of solvation -37.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.347 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.691 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds