Wall clock time and date at job start Tue Mar 31 2020 23:21:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09002 * 109.46922 * 2 1
4 4 N 1.46497 * 109.47322 * 120.00216 * 2 1 3
5 5 C 1.36943 * 119.99769 * 274.99774 * 4 2 1
6 6 H 1.08003 * 119.99763 * 0.02562 * 5 4 2
7 7 C 1.38809 * 119.99898 * 179.97438 * 5 4 2
8 8 N 1.31618 * 119.99959 * 179.97438 * 7 5 4
9 9 Si 1.86806 * 119.99867 * 0.02562 * 7 5 4
10 10 H 1.48495 * 109.47035 * 90.00204 * 9 7 5
11 11 H 1.48502 * 109.47028 * 209.99833 * 9 7 5
12 12 H 1.48502 * 109.47190 * 329.99666 * 9 7 5
13 13 C 1.53001 * 109.46809 * 240.00309 * 2 1 3
14 14 H 1.09002 * 109.51506 * 64.99921 * 13 2 1
15 15 C 1.53300 * 109.50930 * 185.10101 * 13 2 1
16 16 N 1.47156 * 108.37873 * 172.27631 * 15 13 2
17 17 C 1.34776 * 120.97789 * 129.49019 * 16 15 13
18 18 O 1.21274 * 120.00482 * 359.97438 * 17 16 15
19 19 C 1.50707 * 119.99615 * 179.97438 * 17 16 15
20 20 C 1.53002 * 109.46910 * 179.97438 * 19 17 16
21 21 N 1.46494 * 109.46977 * 179.97438 * 20 19 17
22 22 C 1.46767 * 124.34946 * 90.00341 * 21 20 19
23 23 C 1.54488 * 105.47235 * 197.01535 * 22 21 20
24 24 C 1.54624 * 101.76243 * 334.58316 * 23 22 21
25 25 C 1.34423 * 124.35368 * 269.69903 * 21 20 19
26 26 O 1.21281 * 124.93648 * 359.57341 * 25 21 20
27 27 C 1.47151 * 118.03773 * 309.45894 * 16 15 13
28 28 C 1.53292 * 108.38215 * 50.54121 * 27 16 15
29 29 O 1.42959 * 109.22441 * 307.69471 * 28 27 16
30 30 H 1.08998 * 109.46831 * 299.99878 * 1 2 3
31 31 H 1.09000 * 109.47040 * 59.99773 * 1 2 3
32 32 H 1.09002 * 109.46922 * 179.97438 * 1 2 3
33 33 H 0.97001 * 120.00284 * 94.99861 * 4 2 1
34 34 H 0.97003 * 119.99906 * 179.97438 * 8 7 5
35 35 H 1.08992 * 109.67727 * 291.99267 * 15 13 2
36 36 H 1.08994 * 109.68217 * 52.51804 * 15 13 2
37 37 H 1.08998 * 109.46968 * 299.99760 * 19 17 16
38 38 H 1.08999 * 109.47271 * 59.99699 * 19 17 16
39 39 H 1.08998 * 109.47358 * 299.99825 * 20 19 17
40 40 H 1.08999 * 109.47151 * 59.99930 * 20 19 17
41 41 H 1.09000 * 110.24384 * 316.01345 * 22 21 20
42 42 H 1.08997 * 110.24813 * 78.01360 * 22 21 20
43 43 H 1.09002 * 110.96619 * 92.70462 * 23 22 21
44 44 H 1.09000 * 110.96746 * 216.45980 * 23 22 21
45 45 H 1.09003 * 110.48394 * 143.47989 * 24 23 22
46 46 H 1.09000 * 110.48321 * 265.98219 * 24 23 22
47 47 H 1.09001 * 109.68225 * 170.26417 * 27 16 15
48 48 H 1.09000 * 109.68314 * 290.78206 * 27 16 15
49 49 H 1.09000 * 109.51207 * 67.61969 * 28 27 16
50 50 H 1.09001 * 109.51296 * 187.72254 * 28 27 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1493 -0.0075 2.3757
6 1 1.8920 1.0404 2.4243
7 6 2.6115 -0.6619 3.5092
8 7 2.7377 -0.0052 4.6428
9 14 3.0557 -2.4745 3.4252
10 1 4.4885 -2.6166 3.0620
11 1 2.8157 -3.1047 4.7483
12 1 2.2161 -3.1429 2.3989
13 6 2.0400 -0.7212 -1.2493
14 1 1.7520 -0.1588 -2.1375
15 6 3.5676 -0.8340 -1.1877
16 7 4.0149 -1.6887 -2.2989
17 6 4.9973 -1.2883 -3.1301
18 8 5.5263 -0.2090 -2.9683
19 6 5.4386 -2.1818 -4.2607
20 6 6.5578 -1.4952 -5.0462
21 7 6.9871 -2.3640 -6.1449
22 6 6.4060 -2.3433 -7.4925
23 6 6.8405 -3.6725 -8.1490
24 6 8.1339 -4.0018 -7.3682
25 6 7.9678 -3.2784 -6.0500
26 8 8.6223 -3.4939 -5.0520
27 6 3.3585 -2.9938 -2.4752
28 6 1.8411 -2.7758 -2.4741
29 8 1.4733 -2.0324 -1.3097
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 2.2491 -1.6318 1.1526
34 1 3.0604 -0.4627 5.4350
35 1 4.0129 0.1562 -1.2840
36 1 3.8648 -1.2795 -0.2384
37 1 5.8041 -3.1256 -3.8564
38 1 4.5945 -2.3729 -4.9233
39 1 6.1918 -0.5515 -5.4506
40 1 7.4019 -1.3037 -4.3838
41 1 5.3190 -2.2893 -7.4337
42 1 6.7963 -1.4977 -8.0586
43 1 6.0871 -4.4459 -7.9997
44 1 7.0498 -3.5335 -9.2097
45 1 8.2199 -5.0766 -7.2086
46 1 9.0072 -3.6251 -7.9006
47 1 3.6654 -3.4340 -3.4240
48 1 3.6351 -3.6576 -1.6561
49 1 1.5524 -2.2209 -3.3667
50 1 1.3346 -3.7410 -2.4657
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700614060.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:21:30
Heat of formation + Delta-G solvation = -117.200929 kcal
Electronic energy + Delta-G solvation = -30522.053965 eV
Core-core repulsion = 26355.895060 eV
Total energy + Delta-G solvation = -4166.158905 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.70277 -41.20607 -39.73625 -37.52427 -37.27537 -35.85130 -34.87037 -34.22600
-32.15963 -31.17158 -30.44581 -28.82366 -28.44972 -26.10225 -25.24765 -24.71203
-23.36055 -22.69633 -21.35864 -20.45571 -20.22832 -19.77887 -18.60033 -17.78033
-17.55978 -17.29561 -17.15478 -16.86502 -16.44666 -16.30645 -16.09527 -15.89628
-15.25307 -15.05526 -14.95285 -14.73197 -14.61212 -14.42178 -14.30586 -14.18269
-13.87403 -13.73597 -13.42603 -13.37928 -13.18337 -12.90935 -12.84743 -12.59020
-12.49865 -12.37539 -12.17885 -12.09251 -11.83213 -11.80973 -11.75778 -11.61633
-11.17839 -11.02067 -10.97476 -10.84671 -9.80144 -9.68746 -9.28191 -8.02325
-5.33677 1.34799 1.36340 1.44111 1.44814 1.47412 1.68078 2.09028
2.46881 2.74432 3.30590 3.41318 3.44517 3.53079 3.66508 3.73627
3.79261 3.90398 3.92970 3.99663 4.09276 4.10561 4.18860 4.26395
4.30623 4.37631 4.50225 4.60118 4.61359 4.67962 4.73919 4.75495
4.78652 4.82090 4.85117 4.91831 4.96786 5.03241 5.14226 5.19331
5.25996 5.26504 5.51456 5.58075 5.78050 6.12063 6.18012 6.24352
6.25973 6.97173 7.08605 7.11042 7.85079 8.04634 9.19398
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016935 B = 0.002564 C = 0.002425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1652.991337 B =10919.231806 C =11544.156389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.176 3.824
3 H 0.060 0.940
4 N -0.744 5.744
5 C -0.220 4.220
6 H 0.061 0.939
7 C -0.064 4.064
8 N -0.984 5.984
9 Si 0.946 3.054
10 H -0.287 1.287
11 H -0.296 1.296
12 H -0.251 1.251
13 C 0.094 3.906
14 H 0.086 0.914
15 C 0.088 3.912
16 N -0.614 5.614
17 C 0.514 3.486
18 O -0.584 6.584
19 C -0.138 4.138
20 C 0.143 3.857
21 N -0.618 5.618
22 C 0.091 3.909
23 C -0.118 4.118
24 C -0.150 4.150
25 C 0.497 3.503
26 O -0.593 6.593
27 C 0.065 3.935
28 C 0.043 3.957
29 O -0.386 6.386
30 H 0.033 0.967
31 H 0.071 0.929
32 H 0.053 0.947
33 H 0.366 0.634
34 H 0.256 0.744
35 H 0.081 0.919
36 H 0.057 0.943
37 H 0.096 0.904
38 H 0.137 0.863
39 H 0.098 0.902
40 H 0.051 0.949
41 H 0.102 0.898
42 H 0.084 0.916
43 H 0.095 0.905
44 H 0.117 0.883
45 H 0.108 0.892
46 H 0.115 0.885
47 H 0.131 0.869
48 H 0.070 0.930
49 H 0.074 0.926
50 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.648 -11.400 -36.076 37.870
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.068 3.932
3 H 0.078 0.922
4 N -0.388 5.388
5 C -0.351 4.351
6 H 0.079 0.921
7 C -0.255 4.255
8 N -0.635 5.635
9 Si 0.775 3.225
10 H -0.213 1.213
11 H -0.223 1.223
12 H -0.176 1.176
13 C 0.035 3.965
14 H 0.104 0.896
15 C -0.035 4.035
16 N -0.347 5.347
17 C 0.303 3.697
18 O -0.464 6.464
19 C -0.179 4.179
20 C 0.019 3.981
21 N -0.350 5.350
22 C -0.030 4.030
23 C -0.155 4.155
24 C -0.190 4.190
25 C 0.287 3.713
26 O -0.474 6.474
27 C -0.056 4.056
28 C -0.034 4.034
29 O -0.305 6.305
30 H 0.052 0.948
31 H 0.090 0.910
32 H 0.073 0.927
33 H 0.200 0.800
34 H 0.065 0.935
35 H 0.099 0.901
36 H 0.075 0.925
37 H 0.115 0.885
38 H 0.155 0.845
39 H 0.116 0.884
40 H 0.070 0.930
41 H 0.120 0.880
42 H 0.103 0.897
43 H 0.113 0.887
44 H 0.136 0.864
45 H 0.126 0.874
46 H 0.133 0.867
47 H 0.149 0.851
48 H 0.089 0.911
49 H 0.092 0.908
50 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 2.097 -10.793 -35.181 36.859
hybrid contribution 0.800 -0.494 1.272 1.582
sum 2.897 -11.287 -33.909 35.855
Atomic orbital electron populations
1.22121 0.96329 1.01617 1.00654 1.20499 0.94049 0.94721 0.83968
0.92181 1.42734 1.79711 1.09547 1.06797 1.19046 1.34344 0.94414
0.87305 0.92128 1.25395 1.02795 1.01984 0.95350 1.69868 1.55072
1.37463 1.01109 0.85523 0.78186 0.81791 0.77034 1.21333 1.22278
1.17569 1.22591 0.90306 0.84981 0.98611 0.89623 1.22106 0.95897
0.96358 0.89167 1.48330 1.36956 1.19834 1.29608 1.21156 0.78285
0.86907 0.83334 1.90707 1.56165 1.25260 1.74246 1.21967 1.01476
0.98879 0.95548 1.20908 0.96272 0.92910 0.87963 1.48504 1.36405
1.37169 1.12960 1.22492 1.00506 0.99889 0.80107 1.22654 0.95531
0.96221 1.01137 1.22382 1.02032 1.02314 0.92276 1.21937 0.78512
0.80131 0.90731 1.90727 1.50301 1.68653 1.37705 1.22786 0.94351
0.83488 1.05024 1.23247 0.93135 0.98486 0.88524 1.88041 1.71028
1.26996 1.44394 0.94762 0.91008 0.92742 0.79989 0.93526 0.90064
0.92489 0.88542 0.84468 0.88368 0.93031 0.88021 0.89732 0.88659
0.86418 0.87401 0.86703 0.85063 0.91136 0.90751 0.85082
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.01 9.30 71.98 0.67 -4.34 16
2 C 0.18 6.60 2.80 44.99 0.13 6.73 16
3 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16
4 N -0.74 -35.05 4.05 -322.93 -1.31 -36.36 16
5 C -0.22 -12.69 10.41 84.03 0.87 -11.81 16
6 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16
7 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16
8 N -0.98 -64.70 13.97 21.65 0.30 -64.40 16
9 Si 0.95 47.56 27.74 68.60 1.90 49.46 16
10 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16
11 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16
12 H -0.25 -11.53 6.52 99.48 0.65 -10.88 16
13 C 0.09 2.81 2.57 30.70 0.08 2.89 16
14 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16
15 C 0.09 2.92 5.82 86.35 0.50 3.42 16
16 N -0.61 -15.68 3.02 -817.35 -2.47 -18.15 16
17 C 0.51 13.40 7.71 87.66 0.68 14.07 16
18 O -0.58 -20.56 15.45 -3.01 -0.05 -20.60 16
19 C -0.14 -2.26 4.40 29.85 0.13 -2.13 16
20 C 0.14 2.68 5.23 86.38 0.45 3.13 16
21 N -0.62 -8.74 2.93 -817.98 -2.40 -11.14 16
22 C 0.09 0.37 7.35 86.83 0.64 1.01 16
23 C -0.12 -0.09 7.18 31.65 0.23 0.13 16
24 C -0.15 -1.18 6.86 30.58 0.21 -0.97 16
25 C 0.50 9.50 8.02 87.90 0.71 10.20 16
26 O -0.59 -18.45 17.58 -3.03 -0.05 -18.50 16
27 C 0.07 1.11 6.54 86.35 0.56 1.68 16
28 C 0.04 0.70 6.98 72.08 0.50 1.21 16
29 O -0.39 -10.61 9.25 -148.98 -1.38 -11.99 16
30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16
31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
32 H 0.05 1.86 7.56 -2.39 -0.02 1.85 16
33 H 0.37 17.14 4.94 -92.71 -0.46 16.68 16
34 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16
35 H 0.08 2.99 7.08 -2.39 -0.02 2.97 16
36 H 0.06 2.25 6.93 -2.39 -0.02 2.24 16
37 H 0.10 1.67 8.02 -2.39 -0.02 1.65 16
38 H 0.14 1.07 7.66 -2.39 -0.02 1.06 16
39 H 0.10 1.64 8.10 -2.39 -0.02 1.62 16
40 H 0.05 1.39 7.87 -2.39 -0.02 1.37 16
41 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16
42 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16
43 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16
44 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16
45 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16
46 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16
47 H 0.13 1.12 6.05 -2.39 -0.01 1.11 16
48 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
50 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16
Total: -1.00 -88.41 397.76 1.80 -86.61
By element:
Atomic # 1 Polarization: 22.84 SS G_CDS: 0.42 Total: 23.26 kcal
Atomic # 6 Polarization: 14.99 SS G_CDS: 6.83 Total: 21.81 kcal
Atomic # 7 Polarization: -124.17 SS G_CDS: -5.87 Total: -130.04 kcal
Atomic # 8 Polarization: -49.62 SS G_CDS: -1.48 Total: -51.10 kcal
Atomic # 14 Polarization: 47.56 SS G_CDS: 1.90 Total: 49.46 kcal
Total: -88.41 1.80 -86.61 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700614060.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.591 kcal
(2) G-P(sol) polarization free energy of solvation -88.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.610 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.201 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds