Wall clock time and date at job start Tue Mar 31 2020 23:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47186 * 2 1 4 4 N 1.46499 * 109.46926 * 120.00107 * 2 1 3 5 5 C 1.36939 * 119.99769 * 274.99530 * 4 2 1 6 6 H 1.07996 * 120.00260 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99725 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00035 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00327 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47478 * 89.99186 * 9 7 5 11 11 H 1.48495 * 109.47089 * 209.99721 * 9 7 5 12 12 H 1.48503 * 109.46549 * 329.99385 * 9 7 5 13 13 C 1.53003 * 109.47114 * 239.99994 * 2 1 3 14 14 H 1.08998 * 109.55146 * 184.87429 * 13 2 1 15 15 C 1.53293 * 109.51032 * 64.74805 * 13 2 1 16 16 N 1.47159 * 108.38067 * 187.77367 * 15 13 2 17 17 C 1.34776 * 120.98009 * 230.55719 * 16 15 13 18 18 O 1.21276 * 120.00495 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99801 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47196 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47207 * 179.97438 * 20 19 17 22 22 C 1.46766 * 124.34872 * 269.72216 * 21 20 19 23 23 C 1.54658 * 105.38082 * 162.85532 * 22 21 20 24 24 C 1.54632 * 101.68317 * 25.76764 * 23 22 21 25 25 C 1.34417 * 124.34988 * 90.02579 * 21 20 19 26 26 O 1.21288 * 124.94113 * 0.42587 * 25 21 20 27 27 C 1.47147 * 118.03490 * 50.53818 * 16 15 13 28 28 C 1.53299 * 108.38403 * 309.46199 * 27 16 15 29 29 O 1.42956 * 109.22214 * 52.30626 * 28 27 16 30 30 H 1.08996 * 109.47160 * 300.00640 * 1 2 3 31 31 H 1.09003 * 109.46808 * 60.00189 * 1 2 3 32 32 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00224 * 95.00287 * 4 2 1 34 34 H 0.96999 * 120.00119 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.68245 * 307.49233 * 15 13 2 36 36 H 1.08992 * 109.68304 * 68.05197 * 15 13 2 37 37 H 1.09003 * 109.47036 * 299.99722 * 19 17 16 38 38 H 1.09002 * 109.47408 * 59.99880 * 19 17 16 39 39 H 1.09003 * 109.46971 * 299.99847 * 20 19 17 40 40 H 1.09002 * 109.46970 * 59.99697 * 20 19 17 41 41 H 1.08994 * 110.24598 * 281.98823 * 22 21 20 42 42 H 1.09002 * 110.24483 * 43.98777 * 22 21 20 43 43 H 1.08999 * 111.19306 * 267.59971 * 23 22 21 44 44 H 1.08999 * 110.82266 * 143.77696 * 23 22 21 45 45 H 1.09006 * 110.48352 * 216.30857 * 24 23 22 46 46 H 1.09001 * 110.59618 * 93.72284 * 24 23 22 47 47 H 1.09006 * 109.68272 * 189.73995 * 27 16 15 48 48 H 1.09000 * 109.68727 * 69.18721 * 27 16 15 49 49 H 1.08996 * 109.51065 * 292.37638 * 28 27 16 50 50 H 1.09004 * 109.55368 * 172.25592 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6113 -0.6620 3.5092 8 7 2.7366 -0.0055 4.6431 9 14 3.0554 -2.4745 3.4254 10 1 4.4882 -2.6168 3.0620 11 1 2.8153 -3.1046 4.7485 12 1 2.2156 -3.1428 2.3991 13 6 2.0400 -0.7213 -1.2493 14 1 3.1265 -0.7982 -1.2080 15 6 1.6295 0.0664 -2.4986 16 7 1.9648 -0.7373 -3.6849 17 6 2.6682 -0.2080 -4.7054 18 8 3.0343 0.9471 -4.6548 19 6 2.9998 -1.0514 -5.9095 20 6 3.7975 -0.2164 -6.9130 21 7 4.1204 -1.0365 -8.0832 22 6 5.3379 -1.8450 -8.2174 23 6 5.0437 -2.8427 -9.3619 24 6 3.9775 -2.0767 -10.1788 25 6 3.3424 -1.1406 -9.1744 26 8 2.2851 -0.5672 -9.3311 27 6 1.5098 -2.1361 -3.7237 28 6 1.9261 -2.8165 -2.4145 29 8 1.4704 -2.0311 -1.3104 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 1.1526 34 1 3.0599 -0.4628 5.4351 35 1 0.5566 0.2576 -2.4760 36 1 2.1708 1.0119 -2.5309 37 1 3.5934 -1.9111 -5.5985 38 1 2.0774 -1.3966 -6.3765 39 1 3.2035 0.6431 -7.2239 40 1 4.7199 0.1292 -6.4462 41 1 6.1856 -1.2102 -8.4752 42 1 5.5371 -2.3835 -7.2909 43 1 4.6405 -3.7785 -8.9749 44 1 5.9379 -3.0222 -9.9588 45 1 3.2352 -2.7671 -10.5794 46 1 4.4453 -1.5111 -10.9847 47 1 1.9718 -2.6493 -4.5672 48 1 0.4249 -2.1667 -3.8244 49 1 3.0121 -2.9012 -2.3776 50 1 1.4815 -3.8104 -2.3625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700614061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:34 Heat of formation + Delta-G solvation = -90.139732 kcal Electronic energy + Delta-G solvation = -30193.794938 eV Core-core repulsion = 26028.809494 eV Total energy + Delta-G solvation = -4164.985443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93284 -40.39703 -38.63431 -36.82327 -35.73156 -34.70423 -34.27105 -32.54150 -30.95454 -30.26481 -28.87845 -28.04523 -27.41434 -25.25393 -24.16369 -23.43536 -22.42332 -21.96979 -19.86773 -19.79854 -19.29094 -17.92907 -17.58096 -17.12948 -16.60739 -16.52028 -16.19993 -15.91378 -15.53940 -15.17922 -14.81498 -14.54129 -14.30568 -14.22437 -14.08972 -13.76855 -13.74968 -13.25763 -13.09559 -12.98912 -12.80217 -12.75753 -12.59668 -12.32969 -12.07901 -12.03204 -11.63826 -11.57209 -11.51042 -11.29991 -10.95676 -10.79228 -10.66083 -10.39708 -10.21331 -10.12485 -9.96905 -9.91249 -9.57239 -9.20884 -8.92672 -8.63525 -7.25636 -5.75193 -3.10426 2.14735 2.38406 2.40632 2.81069 3.39499 3.45234 3.46954 3.79123 3.85445 3.93516 4.23489 4.26494 4.46100 4.50712 4.57292 4.59333 4.61799 4.75819 4.91142 4.94358 4.97396 5.00023 5.04741 5.15221 5.18738 5.22463 5.31452 5.34568 5.41382 5.51275 5.52845 5.55085 5.56538 5.68169 5.71506 5.87765 6.05799 6.10779 6.22578 6.33627 6.47878 6.67347 6.74048 7.06158 7.13032 7.28878 7.74447 7.91303 8.01099 8.43959 9.23123 9.95395 10.16355 11.42991 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.002203 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.683473 B =12709.165542 C =13093.979089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.069 0.931 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.072 3.928 14 H 0.064 0.936 15 C 0.082 3.918 16 N -0.613 5.613 17 C 0.520 3.480 18 O -0.538 6.538 19 C -0.156 4.156 20 C 0.141 3.859 21 N -0.621 5.621 22 C 0.099 3.901 23 C -0.132 4.132 24 C -0.156 4.156 25 C 0.514 3.486 26 O -0.529 6.529 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.362 6.362 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.053 0.947 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -9.372 -30.739 32.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.087 0.913 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.109 0.891 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.013 3.987 14 H 0.082 0.918 15 C -0.040 4.040 16 N -0.348 5.348 17 C 0.308 3.692 18 O -0.415 6.415 19 C -0.197 4.197 20 C 0.019 3.981 21 N -0.355 5.355 22 C -0.024 4.024 23 C -0.170 4.170 24 C -0.196 4.196 25 C 0.301 3.699 26 O -0.405 6.405 27 C -0.051 4.051 28 C -0.033 4.033 29 O -0.280 6.280 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.071 0.929 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.722 -8.278 -30.406 31.732 hybrid contribution 0.510 -1.455 -0.009 1.542 sum 4.232 -9.732 -30.415 32.214 Atomic orbital electron populations 1.22386 0.98131 1.01645 1.00139 1.20174 0.93033 0.94897 0.83896 0.91319 1.42703 1.79593 1.09607 1.06762 1.19080 1.36880 0.95526 0.85731 0.89140 1.24656 1.01461 0.97497 0.95522 1.69703 1.52654 1.35586 1.00232 0.86560 0.78392 0.86932 0.76851 1.21258 1.21827 1.19926 1.23032 0.97602 0.82964 0.95103 0.91777 1.22485 1.02208 0.95862 0.83449 1.48187 1.54812 1.12719 1.19038 1.20418 0.77452 0.87761 0.83565 1.90725 1.53053 1.17749 1.79988 1.22041 1.02944 0.99967 0.94735 1.21095 1.00694 0.92490 0.83808 1.48361 1.21995 1.47714 1.17478 1.22180 0.87244 0.93090 0.99919 1.22636 0.99671 0.98193 0.96479 1.22345 0.99899 0.99068 0.98305 1.20999 0.83926 0.81838 0.83089 1.90758 1.21887 1.48960 1.78943 1.22500 1.01070 0.81743 0.99783 1.22917 0.99387 0.95247 0.85753 1.88090 1.67955 1.25835 1.46129 0.92369 0.94314 0.92561 0.80109 0.93101 0.89914 0.87932 0.88664 0.88474 0.88947 0.89226 0.90709 0.90152 0.89817 0.89030 0.87993 0.87753 0.89210 0.90200 0.92906 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.06 37.16 0.34 -2.57 16 2 C 0.19 3.64 2.77 -67.93 -0.19 3.45 16 3 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 4 N -0.74 -17.71 4.91 -53.43 -0.26 -17.97 16 5 C -0.24 -6.83 10.41 -15.06 -0.16 -6.99 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 9 Si 0.88 22.32 27.74 -169.99 -4.71 17.60 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.60 6.52 56.52 0.37 -6.23 16 13 C 0.07 1.15 2.61 -26.58 -0.07 1.08 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.08 1.14 5.82 -3.53 -0.02 1.12 16 16 N -0.61 -7.24 3.02 -172.27 -0.52 -7.76 16 17 C 0.52 6.31 7.71 -10.98 -0.08 6.22 16 18 O -0.54 -8.43 15.45 5.56 0.09 -8.34 16 19 C -0.16 -1.31 4.40 -27.88 -0.12 -1.43 16 20 C 0.14 1.26 5.22 -4.04 -0.02 1.24 16 21 N -0.62 -4.58 2.93 -172.30 -0.51 -5.09 16 22 C 0.10 0.38 7.36 -3.03 -0.02 0.35 16 23 C -0.13 -0.31 7.19 -25.00 -0.18 -0.49 16 24 C -0.16 -0.72 6.86 -26.74 -0.18 -0.91 16 25 C 0.51 4.68 8.02 -10.86 -0.09 4.59 16 26 O -0.53 -7.30 17.59 5.55 0.10 -7.20 16 27 C 0.07 0.64 6.54 -3.53 -0.02 0.62 16 28 C 0.05 0.48 6.98 37.31 0.26 0.74 16 29 O -0.36 -5.56 9.24 -35.23 -0.33 -5.88 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.57 6.41 -51.93 -0.33 0.24 16 32 H 0.06 1.03 7.56 -51.93 -0.39 0.64 16 33 H 0.37 8.75 5.44 -40.82 -0.22 8.53 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.08 1.11 6.26 -51.93 -0.33 0.78 16 36 H 0.10 1.51 7.08 -51.93 -0.37 1.15 16 37 H 0.10 0.59 7.66 -51.93 -0.40 0.19 16 38 H 0.10 0.81 8.01 -51.93 -0.42 0.40 16 39 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 40 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.54 6.05 -51.93 -0.31 0.23 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -37.11 396.50 -8.31 -45.42 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.26 Total: 4.86 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.66 Total: 7.05 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.51 Total: -59.49 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.14 Total: -21.42 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.11 -8.31 -45.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700614061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.720 kcal (2) G-P(sol) polarization free energy of solvation -37.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds