Wall clock time and date at job start Tue Mar 31 2020 23:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47186 * 2 1 4 4 N 1.46499 * 109.46926 * 120.00107 * 2 1 3 5 5 C 1.36939 * 119.99769 * 274.99530 * 4 2 1 6 6 H 1.07996 * 120.00260 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99725 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00035 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00327 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47478 * 89.99186 * 9 7 5 11 11 H 1.48495 * 109.47089 * 209.99721 * 9 7 5 12 12 H 1.48503 * 109.46549 * 329.99385 * 9 7 5 13 13 C 1.53003 * 109.47114 * 239.99994 * 2 1 3 14 14 H 1.08998 * 109.55146 * 184.87429 * 13 2 1 15 15 C 1.53293 * 109.51032 * 64.74805 * 13 2 1 16 16 N 1.47159 * 108.38067 * 187.77367 * 15 13 2 17 17 C 1.34776 * 120.98009 * 230.55719 * 16 15 13 18 18 O 1.21276 * 120.00495 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99801 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47196 * 179.97438 * 19 17 16 21 21 N 1.46500 * 109.47207 * 179.97438 * 20 19 17 22 22 C 1.46766 * 124.34872 * 269.72216 * 21 20 19 23 23 C 1.54658 * 105.38082 * 162.85532 * 22 21 20 24 24 C 1.54632 * 101.68317 * 25.76764 * 23 22 21 25 25 C 1.34417 * 124.34988 * 90.02579 * 21 20 19 26 26 O 1.21288 * 124.94113 * 0.42587 * 25 21 20 27 27 C 1.47147 * 118.03490 * 50.53818 * 16 15 13 28 28 C 1.53299 * 108.38403 * 309.46199 * 27 16 15 29 29 O 1.42956 * 109.22214 * 52.30626 * 28 27 16 30 30 H 1.08996 * 109.47160 * 300.00640 * 1 2 3 31 31 H 1.09003 * 109.46808 * 60.00189 * 1 2 3 32 32 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 33 33 H 0.96995 * 120.00224 * 95.00287 * 4 2 1 34 34 H 0.96999 * 120.00119 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.68245 * 307.49233 * 15 13 2 36 36 H 1.08992 * 109.68304 * 68.05197 * 15 13 2 37 37 H 1.09003 * 109.47036 * 299.99722 * 19 17 16 38 38 H 1.09002 * 109.47408 * 59.99880 * 19 17 16 39 39 H 1.09003 * 109.46971 * 299.99847 * 20 19 17 40 40 H 1.09002 * 109.46970 * 59.99697 * 20 19 17 41 41 H 1.08994 * 110.24598 * 281.98823 * 22 21 20 42 42 H 1.09002 * 110.24483 * 43.98777 * 22 21 20 43 43 H 1.08999 * 111.19306 * 267.59971 * 23 22 21 44 44 H 1.08999 * 110.82266 * 143.77696 * 23 22 21 45 45 H 1.09006 * 110.48352 * 216.30857 * 24 23 22 46 46 H 1.09001 * 110.59618 * 93.72284 * 24 23 22 47 47 H 1.09006 * 109.68272 * 189.73995 * 27 16 15 48 48 H 1.09000 * 109.68727 * 69.18721 * 27 16 15 49 49 H 1.08996 * 109.51065 * 292.37638 * 28 27 16 50 50 H 1.09004 * 109.55368 * 172.25592 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6113 -0.6620 3.5092 8 7 2.7366 -0.0055 4.6431 9 14 3.0554 -2.4745 3.4254 10 1 4.4882 -2.6168 3.0620 11 1 2.8153 -3.1046 4.7485 12 1 2.2156 -3.1428 2.3991 13 6 2.0400 -0.7213 -1.2493 14 1 3.1265 -0.7982 -1.2080 15 6 1.6295 0.0664 -2.4986 16 7 1.9648 -0.7373 -3.6849 17 6 2.6682 -0.2080 -4.7054 18 8 3.0343 0.9471 -4.6548 19 6 2.9998 -1.0514 -5.9095 20 6 3.7975 -0.2164 -6.9130 21 7 4.1204 -1.0365 -8.0832 22 6 5.3379 -1.8450 -8.2174 23 6 5.0437 -2.8427 -9.3619 24 6 3.9775 -2.0767 -10.1788 25 6 3.3424 -1.1406 -9.1744 26 8 2.2851 -0.5672 -9.3311 27 6 1.5098 -2.1361 -3.7237 28 6 1.9261 -2.8165 -2.4145 29 8 1.4704 -2.0311 -1.3104 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 1.1526 34 1 3.0599 -0.4628 5.4351 35 1 0.5566 0.2576 -2.4760 36 1 2.1708 1.0119 -2.5309 37 1 3.5934 -1.9111 -5.5985 38 1 2.0774 -1.3966 -6.3765 39 1 3.2035 0.6431 -7.2239 40 1 4.7199 0.1292 -6.4462 41 1 6.1856 -1.2102 -8.4752 42 1 5.5371 -2.3835 -7.2909 43 1 4.6405 -3.7785 -8.9749 44 1 5.9379 -3.0222 -9.9588 45 1 3.2352 -2.7671 -10.5794 46 1 4.4453 -1.5111 -10.9847 47 1 1.9718 -2.6493 -4.5672 48 1 0.4249 -2.1667 -3.8244 49 1 3.0121 -2.9012 -2.3776 50 1 1.4815 -3.8104 -2.3625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700614061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:33 Heat of formation + Delta-G solvation = -117.549553 kcal Electronic energy + Delta-G solvation = -30194.983517 eV Core-core repulsion = 26028.809494 eV Total energy + Delta-G solvation = -4166.174022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70560 -41.20446 -39.74360 -37.50202 -37.28491 -35.80912 -34.88767 -34.33881 -32.42101 -31.09058 -30.24092 -28.51945 -28.43686 -26.54658 -25.30009 -24.64845 -23.31577 -22.70320 -21.38410 -20.44166 -20.17656 -19.77006 -18.57955 -17.80413 -17.56075 -17.23955 -17.02853 -16.95922 -16.57853 -16.27667 -16.17092 -15.86869 -15.42376 -14.96882 -14.90097 -14.71259 -14.61684 -14.35749 -14.31961 -14.15965 -13.93937 -13.84846 -13.44992 -13.34907 -13.17334 -12.94576 -12.87904 -12.49471 -12.41688 -12.34598 -12.16946 -12.11181 -11.84029 -11.81478 -11.76355 -11.61000 -11.22681 -10.98922 -10.96978 -10.83705 -9.79719 -9.65390 -9.32836 -8.01597 -5.34792 1.37905 1.40908 1.45385 1.48142 1.49602 1.67976 2.09205 2.49321 2.73058 3.30421 3.37337 3.43295 3.46996 3.66384 3.76505 3.86557 3.91172 3.93503 3.97447 4.06705 4.09538 4.24705 4.25572 4.29821 4.35694 4.47570 4.57614 4.59163 4.62800 4.68023 4.73808 4.78543 4.80165 4.85937 4.92275 4.93299 5.02881 5.13855 5.19923 5.24925 5.25919 5.51261 5.56129 5.76926 6.12387 6.17573 6.22371 6.24777 6.97182 7.08258 7.11745 7.84013 8.04955 9.19791 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.002203 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.683473 B =12709.165542 C =13093.979089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.179 3.821 3 H 0.058 0.942 4 N -0.746 5.746 5 C -0.228 4.228 6 H 0.058 0.942 7 C -0.066 4.066 8 N -0.984 5.984 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.253 1.253 13 C 0.090 3.910 14 H 0.052 0.948 15 C 0.090 3.910 16 N -0.614 5.614 17 C 0.516 3.484 18 O -0.582 6.582 19 C -0.140 4.140 20 C 0.142 3.858 21 N -0.618 5.618 22 C 0.091 3.909 23 C -0.119 4.119 24 C -0.150 4.150 25 C 0.499 3.501 26 O -0.590 6.590 27 C 0.073 3.927 28 C 0.037 3.963 29 O -0.384 6.384 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.368 0.632 34 H 0.257 0.743 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.127 0.873 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 -13.106 -33.525 36.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.071 3.929 3 H 0.076 0.924 4 N -0.390 5.390 5 C -0.359 4.359 6 H 0.076 0.924 7 C -0.257 4.257 8 N -0.635 5.635 9 Si 0.782 3.218 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.177 1.177 13 C 0.031 3.969 14 H 0.070 0.930 15 C -0.034 4.034 16 N -0.347 5.347 17 C 0.305 3.695 18 O -0.462 6.462 19 C -0.181 4.181 20 C 0.019 3.981 21 N -0.350 5.350 22 C -0.031 4.031 23 C -0.156 4.156 24 C -0.190 4.190 25 C 0.289 3.711 26 O -0.470 6.470 27 C -0.048 4.048 28 C -0.040 4.040 29 O -0.303 6.303 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.134 0.866 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.145 0.855 48 H 0.106 0.894 49 H 0.075 0.925 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.687 -12.061 -33.254 35.683 hybrid contribution 0.207 -0.208 0.788 0.841 sum 4.894 -12.269 -32.466 35.050 Atomic orbital electron populations 1.22205 0.96706 1.01605 1.00479 1.20383 0.93932 0.94663 0.83929 0.92370 1.42677 1.79928 1.09639 1.06732 1.19039 1.35034 0.94408 0.87425 0.92436 1.25493 1.02460 1.02631 0.95141 1.69886 1.54727 1.37720 1.01128 0.85397 0.78529 0.80862 0.76968 1.20456 1.22300 1.17732 1.22548 0.96567 0.83822 0.93979 0.92953 1.22209 1.02174 0.95267 0.83722 1.48282 1.54538 1.13828 1.18084 1.21080 0.76545 0.87557 0.84284 1.90710 1.54722 1.19840 1.80895 1.21969 1.03542 0.99943 0.92613 1.20921 1.00446 0.92120 0.84621 1.48493 1.22884 1.47249 1.16420 1.22505 0.85747 0.93273 1.01545 1.22677 0.99740 0.97652 0.95539 1.22385 1.00536 0.98465 0.97608 1.21870 0.83314 0.81761 0.84146 1.90718 1.24620 1.51477 1.80218 1.22720 1.01943 0.79889 1.00288 1.23264 0.99999 0.95818 0.84898 1.88037 1.68288 1.25412 1.48559 0.94815 0.91176 0.92661 0.79879 0.93403 0.89356 0.89518 0.85233 0.87937 0.92429 0.88858 0.89812 0.88410 0.88705 0.86600 0.87330 0.86675 0.85545 0.89364 0.92494 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.06 71.98 0.65 -4.62 16 2 C 0.18 6.88 2.77 44.99 0.12 7.00 16 3 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 4 N -0.75 -35.51 4.91 -322.94 -1.58 -37.09 16 5 C -0.23 -13.19 10.41 84.03 0.87 -12.31 16 6 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 7 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 8 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16 9 Si 0.96 46.27 27.74 68.60 1.90 48.17 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 12 H -0.25 -11.23 6.52 99.48 0.65 -10.59 16 13 C 0.09 2.77 2.61 30.69 0.08 2.85 16 14 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 15 C 0.09 2.39 5.82 86.35 0.50 2.89 16 16 N -0.61 -13.20 3.02 -817.34 -2.47 -15.67 16 17 C 0.52 11.81 7.71 87.66 0.68 12.49 16 18 O -0.58 -18.41 15.45 -3.02 -0.05 -18.45 16 19 C -0.14 -2.01 4.40 29.85 0.13 -1.88 16 20 C 0.14 2.42 5.22 86.38 0.45 2.88 16 21 N -0.62 -8.02 2.93 -817.64 -2.40 -10.42 16 22 C 0.09 0.37 7.36 86.89 0.64 1.01 16 23 C -0.12 -0.07 7.19 31.71 0.23 0.16 16 24 C -0.15 -1.01 6.86 30.59 0.21 -0.80 16 25 C 0.50 8.63 8.02 87.90 0.70 9.33 16 26 O -0.59 -16.68 17.59 -3.06 -0.05 -16.74 16 27 C 0.07 1.02 6.54 86.36 0.56 1.59 16 28 C 0.04 0.64 6.98 72.08 0.50 1.15 16 29 O -0.38 -10.81 9.24 -148.98 -1.38 -12.19 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.99 6.41 -2.39 -0.02 1.98 16 32 H 0.05 1.95 7.56 -2.39 -0.02 1.93 16 33 H 0.37 17.10 5.44 -92.71 -0.50 16.59 16 34 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.09 2.23 6.26 -2.39 -0.01 2.22 16 36 H 0.09 2.60 7.08 -2.39 -0.02 2.58 16 37 H 0.13 0.99 7.66 -2.39 -0.02 0.98 16 38 H 0.10 1.44 8.01 -2.39 -0.02 1.42 16 39 H 0.06 1.39 7.88 -2.39 -0.02 1.37 16 40 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 41 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.13 0.85 6.05 -2.38 -0.01 0.84 16 48 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -85.96 396.50 1.46 -84.50 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.38 Total: 23.25 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.81 Total: 18.23 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.15 Total: -126.77 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -1.48 Total: -47.38 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.90 Total: 48.17 kcal Total: -85.96 1.46 -84.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700614061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.049 kcal (2) G-P(sol) polarization free energy of solvation -85.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds