Wall clock time and date at job start Tue Mar 31 2020 22:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.98898 * 2 1 4 4 O 1.43741 * 109.87407 * 121.08460 * 2 1 3 5 5 C 1.44381 * 106.97819 * 145.93813 * 4 2 1 6 6 C 1.54995 * 103.48819 * 319.93737 * 5 4 2 7 7 C 1.54103 * 109.87757 * 238.91242 * 2 1 3 8 8 H 1.08996 * 110.48151 * 119.74207 * 7 2 1 9 9 C 1.50696 * 110.48878 * 357.22232 * 7 2 1 10 10 O 1.21276 * 120.00241 * 273.57665 * 9 7 2 11 11 N 1.34780 * 119.99371 * 93.58171 * 9 7 2 12 12 C 1.46510 * 119.99345 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85004 * 23.80410 * 12 11 9 14 14 C 1.53780 * 113.60971 * 154.99952 * 12 11 9 15 15 C 1.53782 * 87.08363 * 89.11556 * 14 12 11 16 16 H 1.09002 * 113.61320 * 270.80095 * 15 14 12 17 17 C 1.52998 * 113.61701 * 139.97852 * 15 14 12 18 18 N 1.46901 * 109.47227 * 176.53036 * 17 15 14 19 19 C 1.46900 * 110.99910 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.46824 * 180.02562 * 19 18 17 21 21 O 1.21289 * 120.00267 * 359.97438 * 20 19 18 22 22 N 1.34774 * 119.99713 * 179.97438 * 20 19 18 23 23 C 1.37111 * 119.99918 * 179.97438 * 22 20 19 24 24 H 1.07993 * 119.99671 * 0.02562 * 23 22 20 25 25 C 1.38944 * 119.99988 * 179.97438 * 23 22 20 26 26 N 1.31414 * 120.00109 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00128 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47377 * 269.99957 * 27 25 23 29 29 H 1.48505 * 109.47210 * 29.99830 * 27 25 23 30 30 H 1.48505 * 109.47348 * 149.99693 * 27 25 23 31 31 C 1.53786 * 87.17037 * 25.38755 * 15 14 12 32 32 H 1.09005 * 109.46996 * 183.12446 * 1 2 3 33 33 H 1.08991 * 109.46977 * 303.13338 * 1 2 3 34 34 H 1.09005 * 109.46496 * 63.13364 * 1 2 3 35 35 H 1.09006 * 110.61360 * 78.43711 * 5 4 2 36 36 H 1.08996 * 110.62237 * 201.28035 * 5 4 2 37 37 H 1.08998 * 110.90650 * 278.82661 * 6 5 4 38 38 H 1.09005 * 110.90869 * 155.21602 * 6 5 4 39 39 H 0.96990 * 120.00393 * 359.97438 * 11 9 7 40 40 H 1.09005 * 113.61639 * 334.56442 * 14 12 11 41 41 H 1.09003 * 113.68721 * 203.67358 * 14 12 11 42 42 H 1.08996 * 109.46865 * 56.52877 * 17 15 14 43 43 H 1.09003 * 109.47225 * 296.53132 * 17 15 14 44 44 H 1.00899 * 110.99643 * 303.95199 * 18 17 15 45 45 H 1.08992 * 109.47402 * 59.99658 * 19 18 17 46 46 H 1.08999 * 109.46715 * 299.99241 * 19 18 17 47 47 H 0.97004 * 120.00538 * 359.97438 * 22 20 19 48 48 H 0.96997 * 119.99837 * 180.02562 * 26 25 23 49 49 H 1.08995 * 113.61304 * 89.15879 * 31 15 14 50 50 H 1.09000 * 113.60905 * 220.06284 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2379 -1.3642 0.7649 6 6 2.9196 -1.8916 -0.6574 7 6 2.0541 -0.7483 -1.2411 8 1 2.6601 -0.0853 -1.8585 9 6 0.9074 -1.3106 -2.0411 10 8 0.4514 -2.3997 -1.7643 11 7 0.3889 -0.6030 -3.0643 12 6 -0.7255 -1.1499 -3.8425 13 1 -1.3058 -1.8882 -3.2894 14 6 -1.5872 -0.0739 -4.5242 15 6 -0.6294 -0.1781 -5.7228 16 1 0.2253 0.4954 -5.6586 17 6 -1.3352 -0.1147 -7.0788 18 7 -0.3340 -0.1383 -8.1535 19 6 -0.9768 -0.0780 -9.4731 20 6 0.0792 -0.1049 -10.5478 21 8 1.2519 -0.1675 -10.2444 22 7 -0.2794 -0.0593 -11.8462 23 6 0.6814 -0.0831 -12.8240 24 1 1.7255 -0.1389 -12.5538 25 6 0.3117 -0.0367 -14.1626 26 7 1.2326 -0.0591 -15.0998 27 14 -1.4944 0.0590 -14.6299 28 1 -2.0393 -1.3138 -14.7840 29 1 -2.2442 0.7725 -13.5649 30 1 -1.6357 0.7945 -15.9123 31 6 -0.3215 -1.6103 -5.2549 32 1 -0.3633 -1.0262 0.0560 33 1 -0.3633 0.5617 0.8605 34 1 -0.3632 0.4645 -0.9168 35 1 4.0685 -0.6589 0.7358 36 1 3.4599 -2.1891 1.4419 37 1 2.3540 -2.8221 -0.6097 38 1 3.8333 -2.0225 -1.2373 39 1 0.7534 0.2682 -3.2855 40 1 -1.5555 0.8934 -4.0227 41 1 -2.6025 -0.4022 -4.7469 42 1 -1.9160 0.8054 -7.1433 43 1 -2.0001 -0.9722 -7.1827 44 1 0.3335 0.6102 -8.0423 45 1 -1.5548 0.8424 -9.5540 46 1 -1.6393 -0.9351 -9.5939 47 1 -1.2173 -0.0096 -12.0889 48 1 0.9744 -0.0262 -16.0342 49 1 -0.9897 -2.3607 -5.6772 50 1 0.7306 -1.8815 -5.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700641715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:07 Heat of formation + Delta-G solvation = -93.691917 kcal Electronic energy + Delta-G solvation = -28934.578836 eV Core-core repulsion = 24769.439358 eV Total energy + Delta-G solvation = -4165.139478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18257 -39.78067 -38.52416 -38.13533 -35.36027 -33.97336 -33.59983 -32.58506 -31.89692 -31.66955 -28.75064 -26.91114 -25.97816 -25.67064 -23.84148 -22.97972 -22.62587 -22.01320 -20.27347 -19.67898 -19.26976 -18.31346 -17.67225 -17.04859 -16.45685 -16.12921 -16.06705 -15.75622 -15.44479 -15.28980 -14.96669 -14.77037 -14.47515 -14.12506 -13.90454 -13.70992 -13.36679 -13.15119 -12.89427 -12.79505 -12.72503 -12.62381 -12.49126 -12.36752 -12.12212 -11.86167 -11.71067 -11.63017 -11.45718 -11.35667 -11.17506 -11.05332 -10.67367 -10.60802 -10.42021 -10.35631 -9.98879 -9.96382 -9.58616 -9.32201 -8.59536 -8.20416 -8.13121 -6.32409 -3.83931 2.21594 2.71713 3.00872 3.05737 3.13741 3.36509 3.72823 3.93089 3.98637 4.09003 4.14282 4.25696 4.34047 4.45677 4.56474 4.64238 4.70124 4.71587 4.77792 4.87048 4.96322 5.03128 5.12146 5.20216 5.25880 5.29610 5.31779 5.39771 5.43551 5.47115 5.49318 5.53480 5.61427 5.64910 5.69666 5.78309 5.79676 5.91579 5.93745 5.95962 6.00759 6.35722 6.41807 7.09092 7.12576 7.56071 7.57769 7.86528 8.13271 8.58580 8.93684 9.41179 9.81532 10.80732 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.001615 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.494269 B =17329.504393 C =17928.042409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 H 0.078 0.922 4 O -0.370 6.370 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.146 4.146 8 H 0.104 0.896 9 C 0.533 3.467 10 O -0.532 6.532 11 N -0.711 5.711 12 C 0.115 3.885 13 H 0.101 0.899 14 C -0.140 4.140 15 C -0.105 4.105 16 H 0.089 0.911 17 C 0.069 3.931 18 N -0.667 5.667 19 C 0.048 3.952 20 C 0.450 3.550 21 O -0.565 6.565 22 N -0.591 5.591 23 C -0.305 4.305 24 H 0.119 0.881 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.270 1.270 29 H -0.270 1.270 30 H -0.277 1.277 31 C -0.133 4.133 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.401 0.599 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.027 0.973 43 H 0.072 0.928 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.091 0.909 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 2.274 29.815 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.096 0.904 4 O -0.289 6.289 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.168 4.168 8 H 0.122 0.878 9 C 0.319 3.681 10 O -0.408 6.408 11 N -0.362 5.362 12 C 0.010 3.990 13 H 0.119 0.881 14 C -0.179 4.179 15 C -0.124 4.124 16 H 0.108 0.892 17 C -0.061 4.061 18 N -0.299 5.299 19 C -0.085 4.085 20 C 0.235 3.765 21 O -0.447 6.447 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.202 1.202 31 C -0.172 4.172 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.235 0.765 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.168 0.832 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.110 0.890 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.449 0.752 30.181 30.516 hybrid contribution -1.357 1.544 -1.196 2.378 sum -5.806 2.296 28.984 29.649 Atomic orbital electron populations 1.22136 0.93421 1.04036 1.02704 1.22576 0.95556 0.95170 0.83370 0.90407 1.88918 1.39836 1.67646 1.32463 1.23568 0.87501 0.96535 0.95240 1.23178 0.99939 0.98969 0.96036 1.22845 0.96498 0.99553 0.97904 0.87806 1.20098 0.83520 0.84934 0.79521 1.90706 1.61193 1.20736 1.68167 1.45754 1.35761 1.22069 1.32635 1.21955 0.88027 0.96936 0.92105 0.88054 1.23352 0.99062 0.99026 0.96429 1.22558 0.98361 0.98181 0.93275 0.89249 1.21972 0.93886 1.00103 0.90132 1.60053 1.16153 1.53676 1.00061 1.21703 0.96195 1.00957 0.89647 1.19726 0.89774 0.83943 0.83013 1.90561 1.18846 1.53579 1.81694 1.42216 1.08223 1.66951 1.05659 1.19434 0.91355 1.47943 0.84686 0.86300 1.25041 0.98051 0.97655 0.95428 1.69622 1.32679 1.49346 1.00488 0.86664 0.84769 0.78905 0.78980 1.19590 1.19559 1.20184 1.23389 1.02889 0.96743 0.94189 0.90801 0.91422 0.90994 0.91901 0.88506 0.88374 0.89575 0.76451 0.91010 0.88615 0.95503 0.90927 0.83190 0.93880 0.89545 0.79696 0.91612 0.89048 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 8.41 37.16 0.31 -0.93 16 2 C 0.09 0.66 4.05 -26.15 -0.11 0.55 16 3 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 4 O -0.37 -3.39 11.19 -35.23 -0.39 -3.78 16 5 C 0.05 0.31 7.72 38.21 0.29 0.61 16 6 C -0.14 -1.02 6.65 -24.72 -0.16 -1.18 16 7 C -0.15 -1.00 3.43 -90.24 -0.31 -1.31 16 8 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 9 C 0.53 4.87 4.78 -10.99 -0.05 4.82 16 10 O -0.53 -6.95 14.62 5.56 0.08 -6.87 16 11 N -0.71 -5.15 4.74 -52.93 -0.25 -5.40 16 12 C 0.12 0.93 4.33 -67.02 -0.29 0.64 16 13 H 0.10 0.97 7.46 -51.93 -0.39 0.58 16 14 C -0.14 -0.92 7.39 -25.92 -0.19 -1.11 16 15 C -0.11 -0.90 3.77 -89.81 -0.34 -1.24 16 16 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 17 C 0.07 0.72 5.51 -3.82 -0.02 0.70 16 18 N -0.67 -9.85 6.13 -115.06 -0.70 -10.55 16 19 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 20 C 0.45 10.15 7.82 -10.99 -0.09 10.06 16 21 O -0.56 -15.11 15.78 5.55 0.09 -15.03 16 22 N -0.59 -14.03 5.09 -10.97 -0.06 -14.09 16 23 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 24 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 27 Si 0.88 19.27 27.74 -169.99 -4.71 14.56 16 28 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 29 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 30 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 31 C -0.13 -1.28 7.44 -25.83 -0.19 -1.47 16 32 H 0.07 0.73 7.05 -51.93 -0.37 0.37 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.45 7.10 -51.93 -0.37 0.08 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.92 6.90 -51.93 -0.36 0.56 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.40 1.99 8.70 -40.82 -0.36 1.64 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 44 H 0.35 5.32 8.43 -39.29 -0.33 4.99 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 48 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.09 0.89 7.92 -51.93 -0.41 0.48 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 401.80 15.07 6.05 6.05 Total: -1.00 -35.34 401.80 -8.82 -44.15 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -8.27 Total: 12.76 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.42 Total: 3.12 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.24 Total: -54.97 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.23 Total: -25.67 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.34 -8.82 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700641715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.540 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds