Wall clock time and date at job start Tue Mar 31 2020 22:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.98898 * 2 1 4 4 O 1.43741 * 109.87407 * 121.08460 * 2 1 3 5 5 C 1.44381 * 106.97819 * 145.93813 * 4 2 1 6 6 C 1.54995 * 103.48819 * 319.93737 * 5 4 2 7 7 C 1.54103 * 109.87757 * 238.91242 * 2 1 3 8 8 H 1.08996 * 110.48151 * 119.74207 * 7 2 1 9 9 C 1.50696 * 110.48878 * 357.22232 * 7 2 1 10 10 O 1.21276 * 120.00241 * 273.57665 * 9 7 2 11 11 N 1.34780 * 119.99371 * 93.58171 * 9 7 2 12 12 C 1.46510 * 119.99345 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85004 * 23.80410 * 12 11 9 14 14 C 1.53780 * 113.60971 * 154.99952 * 12 11 9 15 15 C 1.53782 * 87.08363 * 89.11556 * 14 12 11 16 16 H 1.09002 * 113.61320 * 270.80095 * 15 14 12 17 17 C 1.52998 * 113.61701 * 139.97852 * 15 14 12 18 18 N 1.46901 * 109.47227 * 176.53036 * 17 15 14 19 19 C 1.46900 * 110.99910 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.46824 * 180.02562 * 19 18 17 21 21 O 1.21289 * 120.00267 * 359.97438 * 20 19 18 22 22 N 1.34774 * 119.99713 * 179.97438 * 20 19 18 23 23 C 1.37111 * 119.99918 * 179.97438 * 22 20 19 24 24 H 1.07993 * 119.99671 * 0.02562 * 23 22 20 25 25 C 1.38944 * 119.99988 * 179.97438 * 23 22 20 26 26 N 1.31414 * 120.00109 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00128 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47377 * 269.99957 * 27 25 23 29 29 H 1.48505 * 109.47210 * 29.99830 * 27 25 23 30 30 H 1.48505 * 109.47348 * 149.99693 * 27 25 23 31 31 C 1.53786 * 87.17037 * 25.38755 * 15 14 12 32 32 H 1.09005 * 109.46996 * 183.12446 * 1 2 3 33 33 H 1.08991 * 109.46977 * 303.13338 * 1 2 3 34 34 H 1.09005 * 109.46496 * 63.13364 * 1 2 3 35 35 H 1.09006 * 110.61360 * 78.43711 * 5 4 2 36 36 H 1.08996 * 110.62237 * 201.28035 * 5 4 2 37 37 H 1.08998 * 110.90650 * 278.82661 * 6 5 4 38 38 H 1.09005 * 110.90869 * 155.21602 * 6 5 4 39 39 H 0.96990 * 120.00393 * 359.97438 * 11 9 7 40 40 H 1.09005 * 113.61639 * 334.56442 * 14 12 11 41 41 H 1.09003 * 113.68721 * 203.67358 * 14 12 11 42 42 H 1.08996 * 109.46865 * 56.52877 * 17 15 14 43 43 H 1.09003 * 109.47225 * 296.53132 * 17 15 14 44 44 H 1.00899 * 110.99643 * 303.95199 * 18 17 15 45 45 H 1.08992 * 109.47402 * 59.99658 * 19 18 17 46 46 H 1.08999 * 109.46715 * 299.99241 * 19 18 17 47 47 H 0.97004 * 120.00538 * 359.97438 * 22 20 19 48 48 H 0.96997 * 119.99837 * 180.02562 * 26 25 23 49 49 H 1.08995 * 113.61304 * 89.15879 * 31 15 14 50 50 H 1.09000 * 113.60905 * 220.06284 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2379 -1.3642 0.7649 6 6 2.9196 -1.8916 -0.6574 7 6 2.0541 -0.7483 -1.2411 8 1 2.6601 -0.0853 -1.8585 9 6 0.9074 -1.3106 -2.0411 10 8 0.4514 -2.3997 -1.7643 11 7 0.3889 -0.6030 -3.0643 12 6 -0.7255 -1.1499 -3.8425 13 1 -1.3058 -1.8882 -3.2894 14 6 -1.5872 -0.0739 -4.5242 15 6 -0.6294 -0.1781 -5.7228 16 1 0.2253 0.4954 -5.6586 17 6 -1.3352 -0.1147 -7.0788 18 7 -0.3340 -0.1383 -8.1535 19 6 -0.9768 -0.0780 -9.4731 20 6 0.0792 -0.1049 -10.5478 21 8 1.2519 -0.1675 -10.2444 22 7 -0.2794 -0.0593 -11.8462 23 6 0.6814 -0.0831 -12.8240 24 1 1.7255 -0.1389 -12.5538 25 6 0.3117 -0.0367 -14.1626 26 7 1.2326 -0.0591 -15.0998 27 14 -1.4944 0.0590 -14.6299 28 1 -2.0393 -1.3138 -14.7840 29 1 -2.2442 0.7725 -13.5649 30 1 -1.6357 0.7945 -15.9123 31 6 -0.3215 -1.6103 -5.2549 32 1 -0.3633 -1.0262 0.0560 33 1 -0.3633 0.5617 0.8605 34 1 -0.3632 0.4645 -0.9168 35 1 4.0685 -0.6589 0.7358 36 1 3.4599 -2.1891 1.4419 37 1 2.3540 -2.8221 -0.6097 38 1 3.8333 -2.0225 -1.2373 39 1 0.7534 0.2682 -3.2855 40 1 -1.5555 0.8934 -4.0227 41 1 -2.6025 -0.4022 -4.7469 42 1 -1.9160 0.8054 -7.1433 43 1 -2.0001 -0.9722 -7.1827 44 1 0.3335 0.6102 -8.0423 45 1 -1.5548 0.8424 -9.5540 46 1 -1.6393 -0.9351 -9.5939 47 1 -1.2173 -0.0096 -12.0889 48 1 0.9744 -0.0262 -16.0342 49 1 -0.9897 -2.3607 -5.6772 50 1 0.7306 -1.8815 -5.3425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700641715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:07 Heat of formation + Delta-G solvation = -122.802087 kcal Electronic energy + Delta-G solvation = -28935.841147 eV Core-core repulsion = 24769.439358 eV Total energy + Delta-G solvation = -4166.401789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83594 -40.50899 -40.16732 -38.94361 -36.56501 -35.81684 -34.43065 -33.74524 -33.21570 -32.44385 -29.89563 -27.67763 -27.06444 -26.56691 -25.21273 -23.80706 -23.16402 -22.79029 -21.31395 -20.90458 -20.47396 -19.96978 -18.32125 -17.80694 -17.58982 -17.11430 -16.99943 -16.68936 -16.63453 -16.16164 -16.00468 -15.75774 -15.47519 -15.28080 -15.09339 -14.86334 -14.61628 -14.28424 -14.03774 -13.93692 -13.53004 -13.35689 -13.29811 -13.28504 -13.15290 -12.99791 -12.89870 -12.56700 -12.41365 -12.23297 -12.00161 -11.98258 -11.89469 -11.78068 -11.51711 -11.39411 -11.13650 -11.03282 -10.58501 -10.42164 -10.24967 -10.01630 -9.24150 -8.41548 -6.02649 1.30063 1.36022 1.44715 1.51919 1.95941 2.09872 2.23040 2.74691 2.85016 3.14854 3.37167 3.38647 3.58601 3.62651 3.81463 3.84142 3.92301 4.04489 4.07190 4.17798 4.20590 4.27067 4.33480 4.43662 4.51418 4.53383 4.56812 4.60600 4.66850 4.76444 4.81464 4.86484 4.88162 4.90708 4.93815 4.96516 5.10561 5.15596 5.17874 5.24578 5.31892 5.52675 5.68607 5.89901 5.91489 6.09762 6.45261 6.52748 6.59929 6.87944 7.22313 7.39822 7.96613 8.76116 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.001615 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.494269 B =17329.504393 C =17928.042409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 H 0.105 0.895 4 O -0.398 6.398 5 C 0.047 3.953 6 C -0.146 4.146 7 C -0.143 4.143 8 H 0.135 0.865 9 C 0.530 3.470 10 O -0.579 6.579 11 N -0.699 5.699 12 C 0.115 3.885 13 H 0.084 0.916 14 C -0.118 4.118 15 C -0.100 4.100 16 H 0.092 0.908 17 C 0.070 3.930 18 N -0.688 5.688 19 C 0.062 3.938 20 C 0.447 3.553 21 O -0.615 6.615 22 N -0.591 5.591 23 C -0.330 4.330 24 H 0.054 0.946 25 C -0.016 4.016 26 N -0.935 5.935 27 Si 0.966 3.034 28 H -0.258 1.258 29 H -0.230 1.230 30 H -0.275 1.275 31 C -0.141 4.141 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.415 0.585 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.343 0.657 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.086 0.914 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 4.225 30.648 31.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.123 0.877 4 O -0.317 6.317 5 C -0.029 4.029 6 C -0.184 4.184 7 C -0.165 4.165 8 H 0.153 0.847 9 C 0.317 3.683 10 O -0.458 6.458 11 N -0.351 5.351 12 C 0.010 3.990 13 H 0.102 0.898 14 C -0.157 4.157 15 C -0.119 4.119 16 H 0.110 0.890 17 C -0.058 4.058 18 N -0.321 5.321 19 C -0.070 4.070 20 C 0.235 3.765 21 O -0.500 6.500 22 N -0.233 5.233 23 C -0.459 4.459 24 H 0.072 0.928 25 C -0.214 4.214 26 N -0.575 5.575 27 Si 0.786 3.214 28 H -0.183 1.183 29 H -0.153 1.153 30 H -0.200 1.200 31 C -0.180 4.180 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.252 0.748 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.162 0.838 45 H 0.095 0.905 46 H 0.129 0.871 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.429 2.733 31.035 32.029 hybrid contribution -0.291 0.880 -1.401 1.680 sum -7.720 3.613 29.634 30.836 Atomic orbital electron populations 1.22109 0.94092 1.02172 1.03598 1.22756 0.95136 0.96221 0.82785 0.87713 1.88884 1.41012 1.68198 1.33649 1.23714 0.87341 0.97127 0.94681 1.23166 1.00272 0.97873 0.97086 1.22930 0.95784 0.99792 0.97982 0.84694 1.20553 0.83693 0.84354 0.79653 1.90689 1.62701 1.22900 1.69527 1.45675 1.35248 1.22357 1.31789 1.21885 0.88435 0.97570 0.91148 0.89751 1.23257 0.98734 0.99209 0.94455 1.22528 0.99022 0.97115 0.93228 0.88981 1.22067 0.93219 1.01288 0.89221 1.60064 1.17572 1.53938 1.00496 1.21622 0.93950 1.03637 0.87802 1.21068 0.90646 0.81010 0.83761 1.90539 1.21821 1.55010 1.82609 1.42046 1.08239 1.67651 1.05377 1.19014 0.89919 1.50261 0.86739 0.92753 1.26133 1.04789 0.96070 0.94435 1.69808 1.36213 1.50266 1.01236 0.85349 0.76686 0.79877 0.79494 1.18283 1.15303 1.20007 1.23415 1.01280 0.97647 0.95636 0.93929 0.90941 0.89683 0.89581 0.88168 0.91407 0.87910 0.74771 0.88998 0.87450 0.93470 0.90362 0.83828 0.90508 0.87106 0.77452 0.91150 0.89507 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.41 71.99 0.61 -1.70 16 2 C 0.09 1.14 4.05 30.97 0.13 1.26 16 3 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 4 O -0.40 -7.00 11.19 -148.98 -1.67 -8.67 16 5 C 0.05 0.57 7.72 72.66 0.56 1.13 16 6 C -0.15 -2.03 6.65 31.90 0.21 -1.82 16 7 C -0.14 -1.78 3.43 -10.55 -0.04 -1.81 16 8 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 9 C 0.53 9.56 4.78 87.66 0.42 9.98 16 10 O -0.58 -15.90 14.62 -3.02 -0.04 -15.95 16 11 N -0.70 -9.22 4.74 -439.75 -2.08 -11.30 16 12 C 0.12 1.75 4.33 45.57 0.20 1.95 16 13 H 0.08 1.62 7.46 -2.39 -0.02 1.60 16 14 C -0.12 -1.18 7.39 31.12 0.23 -0.95 16 15 C -0.10 -1.47 3.77 -10.27 -0.04 -1.51 16 16 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 17 C 0.07 1.24 5.51 86.30 0.48 1.72 16 18 N -0.69 -18.82 6.13 -517.95 -3.17 -21.99 16 19 C 0.06 1.82 6.17 85.56 0.53 2.35 16 20 C 0.45 19.95 7.82 87.66 0.69 20.63 16 21 O -0.62 -33.96 15.78 -3.06 -0.05 -34.01 16 22 N -0.59 -27.66 5.09 -306.99 -1.56 -29.22 16 23 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 24 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 25 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 26 N -0.93 -56.28 13.96 21.66 0.30 -55.98 16 27 Si 0.97 38.40 27.74 68.60 1.90 40.31 16 28 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 29 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 30 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 31 C -0.14 -2.61 7.44 31.18 0.23 -2.38 16 32 H 0.04 0.88 7.05 -2.38 -0.02 0.86 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.92 7.10 -2.38 -0.02 0.91 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.37 6.90 -2.39 -0.02 1.35 16 38 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.42 3.09 8.70 -92.72 -0.81 2.28 16 40 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.11 0.89 8.10 -2.39 -0.02 0.87 16 42 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 1.32 7.88 -2.39 -0.02 1.30 16 44 H 0.34 9.98 8.43 -89.69 -0.76 9.23 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.39 14.97 5.76 -92.71 -0.53 14.43 16 48 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.09 1.66 7.92 -2.39 -0.02 1.64 16 50 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -84.79 401.80 -2.04 -86.83 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -1.18 Total: 40.02 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.52 Total: 9.96 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -6.52 Total: -118.49 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -1.76 Total: -58.63 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.31 kcal Total: -84.79 -2.04 -86.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700641715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.973 kcal (2) G-P(sol) polarization free energy of solvation -84.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds