Wall clock time and date at job start Tue Mar 31 2020 22:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.41449 * 2 1 4 4 O 1.44420 * 110.37280 * 122.31174 * 2 1 3 5 5 C 1.44426 * 105.27516 * 159.34413 * 4 2 1 6 6 C 1.54475 * 104.80198 * 319.48631 * 5 4 2 7 7 C 1.54479 * 110.37201 * 237.69174 * 2 1 3 8 8 H 1.08998 * 110.62905 * 335.89229 * 7 2 1 9 9 C 1.50698 * 110.51019 * 98.54561 * 7 2 1 10 10 O 1.21285 * 120.00148 * 356.09169 * 9 7 2 11 11 N 1.34784 * 119.99866 * 176.09979 * 9 7 2 12 12 C 1.46496 * 119.99758 * 179.97438 * 11 9 7 13 13 H 1.09001 * 112.85032 * 336.19438 * 12 11 9 14 14 C 1.53782 * 113.68971 * 107.45966 * 12 11 9 15 15 C 1.53962 * 87.11063 * 89.19569 * 14 12 11 16 16 H 1.08993 * 113.61598 * 270.84305 * 15 14 12 17 17 C 1.52999 * 113.66529 * 139.88900 * 15 14 12 18 18 N 1.46895 * 109.47056 * 87.55186 * 17 15 14 19 19 C 1.46903 * 110.99790 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47004 * 180.02562 * 19 18 17 21 21 O 1.21290 * 120.00310 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00415 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00677 * 180.02562 * 22 20 19 24 24 H 1.08005 * 119.99750 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00584 * 179.97438 * 23 22 20 26 26 N 1.31418 * 119.99774 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00174 * 180.02562 * 25 23 22 28 28 H 1.48491 * 109.47340 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47194 * 120.00016 * 27 25 23 30 30 H 1.48502 * 109.47096 * 239.99690 * 27 25 23 31 31 C 1.53781 * 113.61266 * 204.99541 * 12 11 9 32 32 H 1.09001 * 109.47566 * 182.30820 * 1 2 3 33 33 H 1.08999 * 109.47240 * 302.31036 * 1 2 3 34 34 H 1.08997 * 109.47569 * 62.30975 * 1 2 3 35 35 H 1.09004 * 110.36954 * 200.65527 * 5 4 2 36 36 H 1.08992 * 110.37247 * 78.32256 * 5 4 2 37 37 H 1.09007 * 110.51342 * 265.33481 * 6 5 4 38 38 H 1.08996 * 110.50832 * 142.62490 * 6 5 4 39 39 H 0.97001 * 119.99554 * 359.97438 * 11 9 7 40 40 H 1.08997 * 113.61668 * 203.67120 * 14 12 11 41 41 H 1.08998 * 113.61674 * 334.49629 * 14 12 11 42 42 H 1.09002 * 109.47053 * 207.55709 * 17 15 14 43 43 H 1.09004 * 109.47121 * 327.55345 * 17 15 14 44 44 H 1.00904 * 111.00303 * 303.95020 * 18 17 15 45 45 H 1.08996 * 109.47299 * 299.99783 * 19 18 17 46 46 H 1.09000 * 109.47283 * 60.00550 * 19 18 17 47 47 H 0.97007 * 119.99613 * 0.02562 * 22 20 19 48 48 H 0.97001 * 119.99861 * 179.97438 * 26 25 23 49 49 H 1.09002 * 113.61445 * 25.35018 * 31 12 11 50 50 H 1.09002 * 113.61408 * 156.16749 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7237 1.1442 5 6 3.3873 -1.0871 0.7994 6 6 3.3177 -1.5056 -0.6859 7 6 2.0678 -0.7740 -1.2240 8 1 1.3286 -1.4918 -1.5795 9 6 2.4482 0.1802 -2.3266 10 8 2.2444 1.3687 -2.1972 11 7 3.0148 -0.2874 -3.4567 12 6 3.3841 0.6402 -4.5288 13 1 2.8111 1.5670 -4.5027 14 6 4.9006 0.8570 -4.6631 15 6 4.9079 -0.3423 -5.6285 16 1 5.0519 -1.3017 -5.1318 17 6 5.8279 -0.1528 -6.8362 18 7 7.1839 -0.6026 -6.4942 19 6 8.0968 -0.4358 -7.6329 20 6 9.4746 -0.9072 -7.2454 21 8 9.6763 -1.3401 -6.1305 22 7 10.4830 -0.8479 -8.1377 23 6 11.7364 -1.2773 -7.7853 24 1 11.9159 -1.6627 -6.7925 25 6 12.7758 -1.2166 -8.7054 26 7 12.5573 -0.7481 -9.9136 27 14 14.4834 -1.8024 -8.2254 28 1 14.4657 -2.2810 -6.8199 29 1 14.8962 -2.9122 -9.1217 30 1 15.4462 -0.6789 -8.3532 31 6 3.4339 -0.0143 -5.9195 32 1 -0.3634 -1.0268 0.0414 33 1 -0.3634 0.5493 0.8685 34 1 -0.3634 0.4775 -0.9099 35 1 3.7241 -1.9223 1.4136 36 1 4.0524 -0.2324 0.9221 37 1 3.1955 -2.5853 -0.7733 38 1 4.2108 -1.1772 -1.2175 39 1 3.1780 -1.2380 -3.5600 40 1 5.1662 1.8008 -5.1394 41 1 5.4506 0.6798 -3.7389 42 1 5.4516 -0.7384 -7.6750 43 1 5.8535 0.9015 -7.1116 44 1 7.5303 -0.1194 -5.6789 45 1 7.7361 -1.0237 -8.4769 46 1 8.1382 0.6165 -7.9143 47 1 10.3219 -0.5014 -9.0293 48 1 13.2830 -0.7054 -10.5558 49 1 2.8000 -0.8964 -6.0100 50 1 3.2971 0.6911 -6.7392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700641716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:10 Heat of formation + Delta-G solvation = -105.198789 kcal Electronic energy + Delta-G solvation = -28813.939077 eV Core-core repulsion = 24648.300624 eV Total energy + Delta-G solvation = -4165.638453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06638 -39.76423 -38.42839 -38.07796 -35.27927 -33.95693 -33.59559 -32.59302 -31.79896 -31.22821 -28.62761 -26.96030 -26.03607 -25.56020 -23.87936 -22.91137 -22.50501 -21.92806 -20.54646 -19.59059 -19.12853 -17.98083 -17.87948 -16.63370 -16.43456 -16.25032 -15.84994 -15.71656 -15.51737 -15.10901 -14.88686 -14.53289 -14.18133 -14.15395 -13.94743 -13.83403 -13.65751 -13.14293 -13.05503 -12.87607 -12.71542 -12.69045 -12.35407 -12.18915 -11.78899 -11.72613 -11.57545 -11.53040 -11.51395 -11.24419 -11.09634 -11.00542 -10.68731 -10.35772 -10.34263 -10.30939 -10.22948 -10.00758 -9.53345 -9.37763 -8.47579 -8.07015 -7.97062 -6.43127 -3.83934 2.19338 2.67997 3.15230 3.25844 3.33115 3.42933 3.89599 4.02379 4.03913 4.17178 4.20882 4.22900 4.30268 4.50070 4.54406 4.61647 4.76129 4.78434 4.79992 4.97503 5.11619 5.13068 5.20399 5.23888 5.28372 5.32800 5.40947 5.43277 5.44800 5.46565 5.50202 5.55784 5.64338 5.68460 5.76216 5.77078 5.82190 5.94601 5.97339 6.01632 6.25103 6.33720 6.41417 7.09175 7.21919 7.54096 7.66093 7.81074 8.05342 8.59975 9.16695 9.53131 10.04529 10.74687 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.001673 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.929078 B =16734.765573 C =17878.867489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.089 0.911 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.143 4.143 8 H 0.112 0.888 9 C 0.526 3.474 10 O -0.535 6.535 11 N -0.708 5.708 12 C 0.118 3.882 13 H 0.102 0.898 14 C -0.150 4.150 15 C -0.105 4.105 16 H 0.099 0.901 17 C 0.068 3.932 18 N -0.669 5.669 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 C -0.139 4.139 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.403 0.597 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.028 0.972 44 H 0.349 0.651 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.073 0.927 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.514 1.086 12.086 27.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.106 0.894 4 O -0.290 6.290 5 C -0.031 4.031 6 C -0.187 4.187 7 C -0.165 4.165 8 H 0.130 0.870 9 C 0.312 3.688 10 O -0.412 6.412 11 N -0.359 5.359 12 C 0.013 3.987 13 H 0.120 0.880 14 C -0.189 4.189 15 C -0.124 4.124 16 H 0.117 0.883 17 C -0.061 4.061 18 N -0.301 5.301 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.201 5.201 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 C -0.178 4.178 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.238 0.762 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.168 0.832 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.632 0.974 12.829 27.789 hybrid contribution 1.257 0.403 -0.904 1.600 sum -23.375 1.377 11.925 26.277 Atomic orbital electron populations 1.21783 0.92705 1.02735 1.02930 1.22911 0.95644 0.96097 0.82601 0.89363 1.89151 1.27018 1.74736 1.38077 1.23396 0.84860 1.00381 0.94473 1.22996 0.97088 1.01558 0.97043 1.22792 0.99849 0.98192 0.95650 0.86981 1.20328 0.76612 0.89104 0.82750 1.90712 1.54053 1.16652 1.79754 1.45683 1.62458 1.11004 1.16766 1.21850 0.96493 0.93805 0.86564 0.88047 1.23555 0.95847 0.99081 1.00377 1.22652 0.93931 0.99290 0.96507 0.88251 1.21948 0.89369 0.97702 0.97121 1.60082 1.00882 1.62555 1.06561 1.21673 0.92911 0.99292 0.94390 1.19827 0.85686 0.85327 0.86551 1.90517 1.83687 1.50919 1.21678 1.41876 1.08323 1.56067 1.13818 1.19759 0.84470 1.38526 1.00122 0.87870 1.25268 1.00241 0.97436 0.95040 1.69624 1.33724 1.46258 1.04708 0.85796 0.81438 0.78238 0.78844 1.19226 1.20731 1.20773 1.23338 0.96817 1.01326 0.96281 0.91849 0.91505 0.90933 0.88525 0.91902 0.89362 0.89687 0.76214 0.89223 0.90928 0.91030 0.95388 0.83236 0.89655 0.93967 0.77468 0.91928 0.90804 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.52 37.16 0.35 -0.67 16 2 C 0.09 0.74 3.25 -25.96 -0.08 0.65 16 3 H 0.09 0.92 6.96 -51.93 -0.36 0.56 16 4 O -0.37 -3.53 11.34 -35.23 -0.40 -3.93 16 5 C 0.05 0.33 7.63 37.93 0.29 0.62 16 6 C -0.15 -0.91 6.66 -25.17 -0.17 -1.07 16 7 C -0.14 -1.01 3.05 -90.21 -0.28 -1.28 16 8 H 0.11 0.59 7.88 -51.93 -0.41 0.18 16 9 C 0.53 4.78 6.98 -10.98 -0.08 4.70 16 10 O -0.54 -6.85 15.08 5.55 0.08 -6.76 16 11 N -0.71 -5.23 5.16 -53.02 -0.27 -5.50 16 12 C 0.12 0.97 4.32 -67.12 -0.29 0.68 16 13 H 0.10 0.97 7.46 -51.93 -0.39 0.58 16 14 C -0.15 -1.37 7.44 -25.82 -0.19 -1.56 16 15 C -0.11 -0.95 3.79 -89.71 -0.34 -1.29 16 16 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 17 C 0.07 0.77 5.52 -3.83 -0.02 0.75 16 18 N -0.67 -10.44 6.12 -115.06 -0.70 -11.14 16 19 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 20 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 21 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 22 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 23 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 24 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 27 Si 0.93 21.00 29.55 -169.99 -5.02 15.97 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 C -0.14 -0.98 7.38 -25.92 -0.19 -1.17 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.53 7.68 -51.93 -0.40 0.13 16 39 H 0.40 2.17 8.69 -40.82 -0.35 1.81 16 40 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.30 7.85 -51.93 -0.41 -0.11 16 44 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 409.44 15.07 6.17 6.17 Total: -1.00 -33.57 409.44 -9.13 -42.70 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -8.39 Total: 12.85 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.35 Total: 3.49 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.31 Total: -54.74 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.23 Total: -26.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.57 -9.13 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700641716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.497 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds