Wall clock time and date at job start Tue Mar 31 2020 22:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.41449 * 2 1 4 4 O 1.44420 * 110.37280 * 122.31174 * 2 1 3 5 5 C 1.44426 * 105.27516 * 159.34413 * 4 2 1 6 6 C 1.54475 * 104.80198 * 319.48631 * 5 4 2 7 7 C 1.54479 * 110.37201 * 237.69174 * 2 1 3 8 8 H 1.08998 * 110.62905 * 335.89229 * 7 2 1 9 9 C 1.50698 * 110.51019 * 98.54561 * 7 2 1 10 10 O 1.21285 * 120.00148 * 356.09169 * 9 7 2 11 11 N 1.34784 * 119.99866 * 176.09979 * 9 7 2 12 12 C 1.46496 * 119.99758 * 179.97438 * 11 9 7 13 13 H 1.09001 * 112.85032 * 336.19438 * 12 11 9 14 14 C 1.53782 * 113.68971 * 107.45966 * 12 11 9 15 15 C 1.53962 * 87.11063 * 89.19569 * 14 12 11 16 16 H 1.08993 * 113.61598 * 270.84305 * 15 14 12 17 17 C 1.52999 * 113.66529 * 139.88900 * 15 14 12 18 18 N 1.46895 * 109.47056 * 87.55186 * 17 15 14 19 19 C 1.46903 * 110.99790 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47004 * 180.02562 * 19 18 17 21 21 O 1.21290 * 120.00310 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00415 * 180.02562 * 20 19 18 23 23 C 1.37094 * 120.00677 * 180.02562 * 22 20 19 24 24 H 1.08005 * 119.99750 * 359.97438 * 23 22 20 25 25 C 1.38948 * 120.00584 * 179.97438 * 23 22 20 26 26 N 1.31418 * 119.99774 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00174 * 180.02562 * 25 23 22 28 28 H 1.48491 * 109.47340 * 359.97438 * 27 25 23 29 29 H 1.48508 * 109.47194 * 120.00016 * 27 25 23 30 30 H 1.48502 * 109.47096 * 239.99690 * 27 25 23 31 31 C 1.53781 * 113.61266 * 204.99541 * 12 11 9 32 32 H 1.09001 * 109.47566 * 182.30820 * 1 2 3 33 33 H 1.08999 * 109.47240 * 302.31036 * 1 2 3 34 34 H 1.08997 * 109.47569 * 62.30975 * 1 2 3 35 35 H 1.09004 * 110.36954 * 200.65527 * 5 4 2 36 36 H 1.08992 * 110.37247 * 78.32256 * 5 4 2 37 37 H 1.09007 * 110.51342 * 265.33481 * 6 5 4 38 38 H 1.08996 * 110.50832 * 142.62490 * 6 5 4 39 39 H 0.97001 * 119.99554 * 359.97438 * 11 9 7 40 40 H 1.08997 * 113.61668 * 203.67120 * 14 12 11 41 41 H 1.08998 * 113.61674 * 334.49629 * 14 12 11 42 42 H 1.09002 * 109.47053 * 207.55709 * 17 15 14 43 43 H 1.09004 * 109.47121 * 327.55345 * 17 15 14 44 44 H 1.00904 * 111.00303 * 303.95020 * 18 17 15 45 45 H 1.08996 * 109.47299 * 299.99783 * 19 18 17 46 46 H 1.09000 * 109.47283 * 60.00550 * 19 18 17 47 47 H 0.97007 * 119.99613 * 0.02562 * 22 20 19 48 48 H 0.97001 * 119.99861 * 179.97438 * 26 25 23 49 49 H 1.09002 * 113.61445 * 25.35018 * 31 12 11 50 50 H 1.09002 * 113.61408 * 156.16749 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7237 1.1442 5 6 3.3873 -1.0871 0.7994 6 6 3.3177 -1.5056 -0.6859 7 6 2.0678 -0.7740 -1.2240 8 1 1.3286 -1.4918 -1.5795 9 6 2.4482 0.1802 -2.3266 10 8 2.2444 1.3687 -2.1972 11 7 3.0148 -0.2874 -3.4567 12 6 3.3841 0.6402 -4.5288 13 1 2.8111 1.5670 -4.5027 14 6 4.9006 0.8570 -4.6631 15 6 4.9079 -0.3423 -5.6285 16 1 5.0519 -1.3017 -5.1318 17 6 5.8279 -0.1528 -6.8362 18 7 7.1839 -0.6026 -6.4942 19 6 8.0968 -0.4358 -7.6329 20 6 9.4746 -0.9072 -7.2454 21 8 9.6763 -1.3401 -6.1305 22 7 10.4830 -0.8479 -8.1377 23 6 11.7364 -1.2773 -7.7853 24 1 11.9159 -1.6627 -6.7925 25 6 12.7758 -1.2166 -8.7054 26 7 12.5573 -0.7481 -9.9136 27 14 14.4834 -1.8024 -8.2254 28 1 14.4657 -2.2810 -6.8199 29 1 14.8962 -2.9122 -9.1217 30 1 15.4462 -0.6789 -8.3532 31 6 3.4339 -0.0143 -5.9195 32 1 -0.3634 -1.0268 0.0414 33 1 -0.3634 0.5493 0.8685 34 1 -0.3634 0.4775 -0.9099 35 1 3.7241 -1.9223 1.4136 36 1 4.0524 -0.2324 0.9221 37 1 3.1955 -2.5853 -0.7733 38 1 4.2108 -1.1772 -1.2175 39 1 3.1780 -1.2380 -3.5600 40 1 5.1662 1.8008 -5.1394 41 1 5.4506 0.6798 -3.7389 42 1 5.4516 -0.7384 -7.6750 43 1 5.8535 0.9015 -7.1116 44 1 7.5303 -0.1194 -5.6789 45 1 7.7361 -1.0237 -8.4769 46 1 8.1382 0.6165 -7.9143 47 1 10.3219 -0.5014 -9.0293 48 1 13.2830 -0.7054 -10.5558 49 1 2.8000 -0.8964 -6.0100 50 1 3.2971 0.6911 -6.7392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700641716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:09 Heat of formation + Delta-G solvation = -131.083707 kcal Electronic energy + Delta-G solvation = -28815.061532 eV Core-core repulsion = 24648.300624 eV Total energy + Delta-G solvation = -4166.760907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.75093 -40.49699 -40.06238 -39.01433 -36.54512 -35.78121 -34.48212 -33.31625 -33.20302 -32.37418 -29.80618 -27.73508 -27.08571 -26.63561 -25.31283 -23.65509 -23.15828 -22.71821 -21.20072 -21.12769 -20.17112 -19.86645 -18.63860 -17.88206 -17.26457 -17.04507 -17.02954 -16.54847 -16.44986 -16.32770 -16.03024 -15.76093 -15.50932 -15.42111 -14.95402 -14.70597 -14.57148 -14.33829 -14.14352 -13.74070 -13.51480 -13.47201 -13.34865 -13.28245 -13.09110 -12.85016 -12.80326 -12.57373 -12.41328 -12.29435 -12.12097 -12.11233 -11.86454 -11.74210 -11.52053 -11.43442 -11.07764 -11.02538 -10.70512 -10.34572 -10.07509 -10.02017 -9.30334 -8.47445 -5.96217 1.36323 1.41773 1.49034 1.55909 2.04331 2.04728 2.28872 2.83240 2.93526 3.19930 3.46658 3.49885 3.55508 3.59103 3.70044 3.76364 3.91913 3.98546 4.02613 4.17123 4.25101 4.33022 4.37508 4.45432 4.50258 4.55936 4.58792 4.66257 4.69743 4.79083 4.80870 4.81909 4.86781 4.90636 4.92728 4.98904 5.04759 5.07724 5.18846 5.20213 5.29796 5.40616 5.64194 5.79442 5.90699 6.13221 6.42678 6.47602 6.59594 7.12125 7.15753 7.55772 8.11048 8.70127 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.001673 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.929078 B =16734.765573 C =17878.867489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 H 0.062 0.938 4 O -0.387 6.387 5 C 0.037 3.963 6 C -0.143 4.143 7 C -0.135 4.135 8 H 0.138 0.862 9 C 0.525 3.475 10 O -0.578 6.578 11 N -0.697 5.697 12 C 0.118 3.882 13 H 0.088 0.912 14 C -0.152 4.152 15 C -0.100 4.100 16 H 0.095 0.905 17 C 0.069 3.931 18 N -0.682 5.682 19 C 0.064 3.936 20 C 0.437 3.563 21 O -0.624 6.624 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.274 1.274 29 H -0.270 1.270 30 H -0.271 1.271 31 C -0.120 4.120 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.415 0.585 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.341 0.659 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.090 0.910 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.382 0.042 11.089 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.022 3.978 3 H 0.080 0.920 4 O -0.307 6.307 5 C -0.039 4.039 6 C -0.181 4.181 7 C -0.157 4.157 8 H 0.155 0.845 9 C 0.312 3.688 10 O -0.458 6.458 11 N -0.348 5.348 12 C 0.012 3.988 13 H 0.106 0.894 14 C -0.191 4.191 15 C -0.119 4.119 16 H 0.113 0.887 17 C -0.060 4.060 18 N -0.314 5.314 19 C -0.068 4.068 20 C 0.224 3.776 21 O -0.511 6.511 22 N -0.211 5.211 23 C -0.464 4.464 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.198 1.198 29 H -0.196 1.196 30 H -0.196 1.196 31 C -0.158 4.158 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.132 0.868 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.253 0.747 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.159 0.841 45 H 0.123 0.877 46 H 0.082 0.918 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.108 0.892 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.516 -0.087 11.793 28.110 hybrid contribution 1.512 0.762 -0.560 1.784 sum -24.004 0.675 11.233 26.511 Atomic orbital electron populations 1.21766 0.91601 1.03534 1.02899 1.22903 0.96588 0.95053 0.83283 0.92027 1.89131 1.28031 1.74748 1.38781 1.23567 0.83886 1.00688 0.95778 1.23004 0.96400 1.02788 0.95860 1.22777 1.00818 0.97858 0.94215 0.84475 1.20695 0.76024 0.88784 0.83309 1.90698 1.55941 1.18546 1.80570 1.45607 1.61495 1.11586 1.16107 1.21799 0.95496 0.93836 0.87646 0.89352 1.23567 0.96394 0.99317 0.99828 1.22580 0.94924 0.98830 0.95581 0.88690 1.22069 0.87170 0.98376 0.98343 1.60112 1.02286 1.63321 1.05701 1.21542 0.89358 1.00480 0.95450 1.20937 0.87507 0.83605 0.85537 1.90484 1.84836 1.52359 1.23381 1.41947 1.08208 1.56570 1.14355 1.19710 0.86381 1.40588 0.99729 0.90353 1.26041 1.03423 0.96965 0.94836 1.69679 1.35018 1.46176 1.05217 0.84866 0.76993 0.78208 0.78234 1.19831 1.19550 1.19622 1.23259 0.95116 1.01939 0.95490 0.90521 0.91784 0.90790 0.86838 0.92857 0.86993 0.90013 0.74744 0.89210 0.92511 0.90031 0.94332 0.84075 0.87720 0.91836 0.76962 0.91296 0.89170 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.52 71.98 0.69 -1.24 16 2 C 0.08 1.38 3.25 31.10 0.10 1.48 16 3 H 0.06 1.38 6.96 -2.39 -0.02 1.36 16 4 O -0.39 -7.28 11.34 -148.98 -1.69 -8.97 16 5 C 0.04 0.52 7.63 72.48 0.55 1.07 16 6 C -0.14 -1.52 6.66 31.61 0.21 -1.31 16 7 C -0.14 -1.74 3.05 -10.53 -0.03 -1.77 16 8 H 0.14 1.08 7.88 -2.39 -0.02 1.07 16 9 C 0.52 9.26 6.98 87.66 0.61 9.87 16 10 O -0.58 -15.17 15.08 -3.05 -0.05 -15.21 16 11 N -0.70 -9.34 5.16 -440.03 -2.27 -11.60 16 12 C 0.12 1.79 4.32 45.52 0.20 1.98 16 13 H 0.09 1.63 7.46 -2.39 -0.02 1.62 16 14 C -0.15 -2.66 7.44 31.18 0.23 -2.43 16 15 C -0.10 -1.61 3.79 -10.20 -0.04 -1.65 16 16 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 17 C 0.07 1.39 5.52 86.30 0.48 1.86 16 18 N -0.68 -20.38 6.12 -517.94 -3.17 -23.55 16 19 C 0.06 2.14 6.17 85.56 0.53 2.67 16 20 C 0.44 20.66 7.82 87.66 0.69 21.34 16 21 O -0.62 -34.52 15.78 -3.06 -0.05 -34.57 16 22 N -0.57 -29.35 5.29 -306.99 -1.62 -30.97 16 23 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 24 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 25 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 26 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 27 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 29 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 30 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 31 C -0.12 -1.35 7.38 31.12 0.23 -1.12 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 0.69 8.14 -2.38 -0.02 0.68 16 38 H 0.08 0.94 7.68 -2.39 -0.02 0.92 16 39 H 0.42 3.53 8.69 -92.71 -0.81 2.73 16 40 H 0.09 1.56 7.90 -2.39 -0.02 1.54 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.04 0.72 7.85 -2.38 -0.02 0.70 16 44 H 0.34 11.02 8.43 -89.69 -0.76 10.26 16 45 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.40 19.20 7.90 -92.70 -0.73 18.47 16 48 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 49 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.11 1.03 8.10 -2.39 -0.02 1.01 16 Total: -1.00 -74.01 409.44 -2.14 -76.16 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -1.33 Total: 40.68 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.72 Total: 12.34 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -6.78 Total: -115.24 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -1.78 Total: -58.75 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -74.01 -2.14 -76.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700641716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.926 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds