Wall clock time and date at job start Tue Mar 31 2020 22:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67853 * 2 1 4 4 C 1.54998 * 110.61705 * 122.97080 * 2 1 3 5 5 C 1.54817 * 102.12466 * 155.53959 * 4 2 1 6 6 H 1.08991 * 110.48506 * 97.77523 * 5 4 2 7 7 C 1.50697 * 110.48585 * 220.42251 * 5 4 2 8 8 O 1.21286 * 120.00239 * 0.02562 * 7 5 4 9 9 N 1.34774 * 120.00163 * 179.97438 * 7 5 4 10 10 C 1.46494 * 120.00473 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.47248 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.84954 * 43.80441 * 11 10 9 13 13 C 1.53781 * 113.61199 * 175.00015 * 11 10 9 14 14 C 1.53774 * 87.08035 * 139.98006 * 13 11 10 15 15 H 1.09006 * 113.61728 * 89.11216 * 14 13 11 16 16 N 1.46900 * 113.61476 * 220.01616 * 14 13 11 17 17 C 1.46902 * 111.00114 * 205.00126 * 16 14 13 18 18 C 1.50697 * 109.47147 * 180.02562 * 17 16 14 19 19 O 1.21294 * 120.00181 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99915 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00605 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99740 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99739 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99973 * 0.02562 * 23 21 20 26 26 H 1.48490 * 109.47388 * 89.99803 * 25 23 21 27 27 H 1.48502 * 109.46769 * 209.99827 * 25 23 21 28 28 H 1.48502 * 109.46909 * 329.99768 * 25 23 21 29 29 C 1.53779 * 87.08341 * 334.56593 * 14 13 11 30 30 C 1.54100 * 104.18606 * 339.09929 * 5 4 2 31 31 O 1.43746 * 107.29659 * 357.97343 * 30 5 4 32 32 H 1.09000 * 109.47038 * 297.03429 * 1 2 3 33 33 H 1.09002 * 109.47096 * 57.03031 * 1 2 3 34 34 H 1.09001 * 109.47472 * 177.03187 * 1 2 3 35 35 H 1.09002 * 110.90913 * 37.32174 * 4 2 1 36 36 H 1.08997 * 110.90321 * 273.75291 * 4 2 1 37 37 H 0.97000 * 119.99472 * 0.02562 * 9 7 5 38 38 H 1.08997 * 109.46955 * 299.99791 * 10 9 7 39 39 H 1.08999 * 109.47518 * 59.99733 * 10 9 7 40 40 H 1.09006 * 113.61308 * 254.52762 * 13 11 10 41 41 H 1.09002 * 113.61785 * 25.42946 * 13 11 10 42 42 H 1.00903 * 110.99939 * 328.95097 * 16 14 13 43 43 H 1.08997 * 109.46997 * 299.99748 * 17 16 14 44 44 H 1.08997 * 109.47456 * 60.00139 * 17 16 14 45 45 H 0.96999 * 119.99786 * 359.97438 * 20 18 17 46 46 H 0.97002 * 120.00018 * 180.02562 * 24 23 21 47 47 H 1.09000 * 113.61113 * 270.88359 * 29 14 13 48 48 H 1.08994 * 113.61729 * 139.98107 * 29 14 13 49 49 H 1.09002 * 109.87699 * 117.39650 * 30 5 4 50 50 H 1.08998 * 109.87837 * 238.39836 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7895 1.2171 5 6 3.4798 -1.2169 0.7243 6 1 4.2406 -0.5332 1.1007 7 6 3.7810 -2.6303 1.1516 8 8 2.9637 -3.2578 1.7913 9 7 4.9583 -3.1975 0.8220 10 6 5.2510 -4.5717 1.2368 11 6 6.6418 -4.9696 0.7386 12 1 7.3856 -4.1873 0.8901 13 6 7.0974 -6.3553 1.2255 14 6 7.6837 -6.5695 -0.1799 15 1 8.7129 -6.2248 -0.2809 16 7 7.4820 -7.9281 -0.7008 17 6 8.5049 -8.2663 -1.6994 18 6 8.2656 -9.6637 -2.2103 19 8 7.3347 -10.3142 -1.7841 20 7 9.0859 -10.1908 -3.1408 21 6 8.8684 -11.4622 -3.6052 22 1 8.0395 -12.0414 -3.2257 23 6 9.7138 -12.0054 -4.5650 24 7 9.5051 -13.2240 -5.0104 25 14 11.1470 -11.0035 -5.2219 26 1 12.3479 -11.2487 -4.3836 27 1 11.4309 -11.4055 -6.6230 28 1 10.8014 -9.5598 -5.1813 29 6 6.6424 -5.5559 -0.6831 30 6 3.3850 -1.1261 -0.8111 31 8 2.0396 -0.7362 -1.1339 32 1 -0.3633 0.4671 0.9154 33 1 -0.3633 0.5593 -0.8622 34 1 -0.3634 -1.0263 -0.0532 35 1 1.4549 -1.6607 1.4258 36 1 2.1503 -0.1479 2.0951 37 1 5.6119 -2.6958 0.3101 38 1 5.2228 -4.6367 2.3245 39 1 4.5064 -5.2456 0.8132 40 1 7.8514 -6.3157 2.0118 41 1 6.2729 -7.0280 1.4619 42 1 7.4701 -8.6045 0.0479 43 1 8.4493 -7.5620 -2.5294 44 1 9.4924 -8.2108 -1.2413 45 1 9.8301 -9.6705 -3.4820 46 1 10.0954 -13.6033 -5.6801 47 1 5.6936 -6.0100 -0.9685 48 1 7.0290 -4.8710 -1.4376 49 1 4.0866 -0.3790 -1.1822 50 1 3.6084 -2.0966 -1.2542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707065404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:53 Heat of formation + Delta-G solvation = -98.977306 kcal Electronic energy + Delta-G solvation = -28472.794261 eV Core-core repulsion = 24307.425592 eV Total energy + Delta-G solvation = -4165.368669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87899 -39.69222 -38.77893 -38.21357 -35.23340 -34.12457 -33.38205 -32.79385 -32.20010 -31.64802 -28.49791 -26.74572 -26.28547 -25.81701 -24.06489 -23.40716 -21.73179 -21.57550 -20.57774 -19.69619 -19.26184 -18.29311 -17.74484 -17.17844 -16.66869 -16.16800 -15.98879 -15.73370 -15.47578 -15.26751 -15.03240 -14.78345 -14.41413 -14.26641 -13.91337 -13.82674 -13.54961 -13.13512 -12.85962 -12.74163 -12.61207 -12.53205 -12.48158 -12.30845 -12.13501 -11.79409 -11.69691 -11.61102 -11.55255 -11.36665 -11.18912 -11.04364 -10.85566 -10.60045 -10.44473 -10.34086 -9.97821 -9.94610 -9.57706 -9.41167 -8.57797 -8.20731 -8.14915 -6.31287 -3.82700 2.22180 2.72883 3.01869 3.05643 3.14226 3.33569 3.74001 3.84114 4.07141 4.10532 4.15644 4.30427 4.35610 4.46335 4.49979 4.56702 4.64247 4.66560 4.73352 4.91529 4.94692 4.97600 5.07493 5.13199 5.16875 5.21761 5.25910 5.33625 5.41896 5.46664 5.53609 5.58224 5.66405 5.67930 5.70055 5.76268 5.77724 5.86031 5.91493 6.00186 6.11597 6.26679 6.40454 7.08533 7.16163 7.56801 7.58636 7.82657 8.14529 8.59634 8.94900 9.42268 9.82680 10.81885 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.001579 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.131400 B =17724.380760 C =18269.629245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.072 0.928 4 C -0.137 4.137 5 C -0.149 4.149 6 H 0.110 0.890 7 C 0.521 3.479 8 O -0.533 6.533 9 N -0.727 5.727 10 C 0.130 3.870 11 C -0.125 4.125 12 H 0.094 0.906 13 C -0.131 4.131 14 C 0.059 3.941 15 H 0.071 0.929 16 N -0.656 5.656 17 C 0.048 3.952 18 C 0.449 3.551 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C -0.121 4.121 30 C 0.059 3.941 31 O -0.370 6.370 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.401 0.599 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.352 0.648 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.094 0.906 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.432 31.534 12.677 34.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.175 4.175 5 C -0.170 4.170 6 H 0.128 0.872 7 C 0.306 3.694 8 O -0.409 6.409 9 N -0.378 5.378 10 C 0.007 3.993 11 C -0.145 4.145 12 H 0.112 0.888 13 C -0.170 4.170 14 C -0.051 4.051 15 H 0.089 0.911 16 N -0.289 5.289 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.160 4.160 30 C -0.018 4.018 31 O -0.289 6.289 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.173 0.827 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.170 30.547 12.626 34.049 hybrid contribution 2.703 0.816 -0.232 2.833 sum -5.466 31.364 12.394 34.164 Atomic orbital electron populations 1.21773 0.92762 1.03414 1.02508 1.23211 0.95706 0.95079 0.84655 0.91047 1.23199 0.94104 1.01863 0.98332 1.22755 1.00913 0.95263 0.98095 0.87227 1.20273 0.81524 0.88177 0.79412 1.90719 1.46689 1.64129 1.39361 1.46015 1.18433 1.15994 1.57379 1.21422 0.96068 0.81934 0.99866 1.22650 0.95967 0.97451 0.98397 0.88813 1.23197 1.01246 0.95937 0.96610 1.22983 0.97368 0.90412 0.94383 0.91105 1.60222 1.48696 1.02309 1.17631 1.21765 0.93267 0.96808 0.96698 1.19739 0.85168 0.88032 0.83575 1.90569 1.31627 1.62205 1.60224 1.42211 1.27506 1.15589 1.37735 1.19442 1.14697 0.88885 1.20405 0.86287 1.25040 0.98147 0.96009 0.96957 1.69622 1.38392 1.14120 1.29986 0.86666 0.82994 0.80005 0.79684 1.19688 1.20160 1.19497 1.23207 1.00944 0.97096 0.94704 1.23084 0.85528 1.01391 0.91834 1.88950 1.27263 1.73600 1.39056 0.90921 0.91739 0.91428 0.88197 0.89755 0.76544 0.91398 0.90767 0.91233 0.88708 0.82714 0.89577 0.93802 0.79718 0.91618 0.88759 0.91816 0.91247 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.66 37.16 0.36 -0.52 16 2 C 0.07 0.47 3.98 -25.68 -0.10 0.37 16 3 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.14 -0.94 5.96 -24.72 -0.15 -1.09 16 5 C -0.15 -0.93 3.44 -90.24 -0.31 -1.24 16 6 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 7 C 0.52 4.73 6.92 -10.99 -0.08 4.66 16 8 O -0.53 -7.15 15.43 5.55 0.09 -7.06 16 9 N -0.73 -5.07 5.53 -60.30 -0.33 -5.40 16 10 C 0.13 1.08 5.51 -4.04 -0.02 1.05 16 11 C -0.13 -0.90 3.76 -89.81 -0.34 -1.24 16 12 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 13 C -0.13 -1.13 7.21 -25.92 -0.19 -1.32 16 14 C 0.06 0.62 4.14 -66.90 -0.28 0.35 16 15 H 0.07 0.68 7.87 -51.93 -0.41 0.28 16 16 N -0.66 -9.76 6.18 -107.14 -0.66 -10.42 16 17 C 0.05 0.77 6.01 -4.98 -0.03 0.74 16 18 C 0.45 10.18 7.82 -10.99 -0.09 10.09 16 19 O -0.56 -15.22 15.78 5.55 0.09 -15.13 16 20 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 21 C -0.31 -8.68 10.16 -14.93 -0.15 -8.84 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.80 13.96 55.50 0.77 -25.03 16 25 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 29 C -0.12 -1.13 7.43 -25.92 -0.19 -1.33 16 30 C 0.06 0.39 7.35 37.73 0.28 0.66 16 31 O -0.37 -3.40 11.23 -35.23 -0.40 -3.80 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 0.94 6.79 -51.93 -0.35 0.58 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.40 1.68 8.47 -40.82 -0.35 1.34 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.35 5.47 8.25 -39.29 -0.32 5.14 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 45 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.62 7.67 -51.93 -0.40 0.22 16 LS Contribution 406.69 15.07 6.13 6.13 Total: -1.00 -35.87 406.69 -8.82 -44.69 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -8.35 Total: 12.17 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.38 Total: 3.40 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.28 Total: -54.99 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.22 Total: -25.99 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.87 -8.82 -44.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707065404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.290 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds