Wall clock time and date at job start Tue Mar 31 2020 22:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.67853 * 2 1 4 4 C 1.54998 * 110.61705 * 122.97080 * 2 1 3 5 5 C 1.54817 * 102.12466 * 155.53959 * 4 2 1 6 6 H 1.08991 * 110.48506 * 97.77523 * 5 4 2 7 7 C 1.50697 * 110.48585 * 220.42251 * 5 4 2 8 8 O 1.21286 * 120.00239 * 0.02562 * 7 5 4 9 9 N 1.34774 * 120.00163 * 179.97438 * 7 5 4 10 10 C 1.46494 * 120.00473 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.47248 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.84954 * 43.80441 * 11 10 9 13 13 C 1.53781 * 113.61199 * 175.00015 * 11 10 9 14 14 C 1.53774 * 87.08035 * 139.98006 * 13 11 10 15 15 H 1.09006 * 113.61728 * 89.11216 * 14 13 11 16 16 N 1.46900 * 113.61476 * 220.01616 * 14 13 11 17 17 C 1.46902 * 111.00114 * 205.00126 * 16 14 13 18 18 C 1.50697 * 109.47147 * 180.02562 * 17 16 14 19 19 O 1.21294 * 120.00181 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.37094 * 119.99915 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00605 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99740 * 179.97438 * 21 20 18 24 24 N 1.31407 * 119.99739 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99973 * 0.02562 * 23 21 20 26 26 H 1.48490 * 109.47388 * 89.99803 * 25 23 21 27 27 H 1.48502 * 109.46769 * 209.99827 * 25 23 21 28 28 H 1.48502 * 109.46909 * 329.99768 * 25 23 21 29 29 C 1.53779 * 87.08341 * 334.56593 * 14 13 11 30 30 C 1.54100 * 104.18606 * 339.09929 * 5 4 2 31 31 O 1.43746 * 107.29659 * 357.97343 * 30 5 4 32 32 H 1.09000 * 109.47038 * 297.03429 * 1 2 3 33 33 H 1.09002 * 109.47096 * 57.03031 * 1 2 3 34 34 H 1.09001 * 109.47472 * 177.03187 * 1 2 3 35 35 H 1.09002 * 110.90913 * 37.32174 * 4 2 1 36 36 H 1.08997 * 110.90321 * 273.75291 * 4 2 1 37 37 H 0.97000 * 119.99472 * 0.02562 * 9 7 5 38 38 H 1.08997 * 109.46955 * 299.99791 * 10 9 7 39 39 H 1.08999 * 109.47518 * 59.99733 * 10 9 7 40 40 H 1.09006 * 113.61308 * 254.52762 * 13 11 10 41 41 H 1.09002 * 113.61785 * 25.42946 * 13 11 10 42 42 H 1.00903 * 110.99939 * 328.95097 * 16 14 13 43 43 H 1.08997 * 109.46997 * 299.99748 * 17 16 14 44 44 H 1.08997 * 109.47456 * 60.00139 * 17 16 14 45 45 H 0.96999 * 119.99786 * 359.97438 * 20 18 17 46 46 H 0.97002 * 120.00018 * 180.02562 * 24 23 21 47 47 H 1.09000 * 113.61113 * 270.88359 * 29 14 13 48 48 H 1.08994 * 113.61729 * 139.98107 * 29 14 13 49 49 H 1.09002 * 109.87699 * 117.39650 * 30 5 4 50 50 H 1.08998 * 109.87837 * 238.39836 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0758 -0.7895 1.2171 5 6 3.4798 -1.2169 0.7243 6 1 4.2406 -0.5332 1.1007 7 6 3.7810 -2.6303 1.1516 8 8 2.9637 -3.2578 1.7913 9 7 4.9583 -3.1975 0.8220 10 6 5.2510 -4.5717 1.2368 11 6 6.6418 -4.9696 0.7386 12 1 7.3856 -4.1873 0.8901 13 6 7.0974 -6.3553 1.2255 14 6 7.6837 -6.5695 -0.1799 15 1 8.7129 -6.2248 -0.2809 16 7 7.4820 -7.9281 -0.7008 17 6 8.5049 -8.2663 -1.6994 18 6 8.2656 -9.6637 -2.2103 19 8 7.3347 -10.3142 -1.7841 20 7 9.0859 -10.1908 -3.1408 21 6 8.8684 -11.4622 -3.6052 22 1 8.0395 -12.0414 -3.2257 23 6 9.7138 -12.0054 -4.5650 24 7 9.5051 -13.2240 -5.0104 25 14 11.1470 -11.0035 -5.2219 26 1 12.3479 -11.2487 -4.3836 27 1 11.4309 -11.4055 -6.6230 28 1 10.8014 -9.5598 -5.1813 29 6 6.6424 -5.5559 -0.6831 30 6 3.3850 -1.1261 -0.8111 31 8 2.0396 -0.7362 -1.1339 32 1 -0.3633 0.4671 0.9154 33 1 -0.3633 0.5593 -0.8622 34 1 -0.3634 -1.0263 -0.0532 35 1 1.4549 -1.6607 1.4258 36 1 2.1503 -0.1479 2.0951 37 1 5.6119 -2.6958 0.3101 38 1 5.2228 -4.6367 2.3245 39 1 4.5064 -5.2456 0.8132 40 1 7.8514 -6.3157 2.0118 41 1 6.2729 -7.0280 1.4619 42 1 7.4701 -8.6045 0.0479 43 1 8.4493 -7.5620 -2.5294 44 1 9.4924 -8.2108 -1.2413 45 1 9.8301 -9.6705 -3.4820 46 1 10.0954 -13.6033 -5.6801 47 1 5.6936 -6.0100 -0.9685 48 1 7.0290 -4.8710 -1.4376 49 1 4.0866 -0.3790 -1.1822 50 1 3.6084 -2.0966 -1.2542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707065404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:52 Heat of formation + Delta-G solvation = -129.075773 kcal Electronic energy + Delta-G solvation = -28474.099428 eV Core-core repulsion = 24307.425592 eV Total energy + Delta-G solvation = -4166.673837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51233 -40.58533 -39.99873 -39.35045 -36.27972 -35.85614 -34.54333 -33.73444 -33.36827 -32.71463 -29.44822 -27.99061 -26.92008 -26.59767 -25.60724 -24.16021 -22.44893 -22.16103 -21.35671 -21.22542 -20.48341 -19.99475 -18.33803 -17.86664 -17.62942 -17.28441 -16.98505 -16.69210 -16.50639 -16.35125 -16.05582 -15.75247 -15.42562 -15.40706 -14.95584 -14.90204 -14.58846 -14.35891 -14.18432 -13.97589 -13.57547 -13.29880 -13.28731 -13.24485 -13.04723 -12.82437 -12.77032 -12.45181 -12.40636 -12.23017 -12.08886 -11.99931 -11.84582 -11.79458 -11.63060 -11.51775 -11.14871 -11.00774 -10.54268 -10.41557 -10.25723 -10.11209 -9.28198 -8.41837 -6.03186 1.30113 1.35681 1.45030 1.53786 1.95474 2.11898 2.23093 2.76555 2.85733 3.14708 3.32641 3.40669 3.58425 3.64386 3.78651 3.91476 3.92000 3.99497 4.02536 4.16552 4.19341 4.27731 4.31674 4.43657 4.47045 4.47563 4.57075 4.60018 4.68491 4.74789 4.83069 4.85665 4.88112 4.92865 4.97536 4.98380 5.13998 5.16633 5.26802 5.29579 5.38688 5.50518 5.56827 5.92237 5.92539 6.18240 6.42594 6.51730 6.59621 6.87532 7.20880 7.39201 7.96424 8.75966 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019767 B = 0.001579 C = 0.001532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.131400 B =17724.380760 C =18269.629245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.097 0.903 4 C -0.139 4.139 5 C -0.139 4.139 6 H 0.149 0.851 7 C 0.514 3.486 8 O -0.586 6.586 9 N -0.711 5.711 10 C 0.133 3.867 11 C -0.101 4.101 12 H 0.128 0.872 13 C -0.131 4.131 14 C 0.055 3.945 15 H 0.096 0.904 16 N -0.680 5.680 17 C 0.063 3.937 18 C 0.446 3.554 19 O -0.617 6.617 20 N -0.590 5.590 21 C -0.332 4.332 22 H 0.053 0.947 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.230 1.230 29 C -0.123 4.123 30 C 0.056 3.944 31 O -0.402 6.402 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.418 0.582 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.344 0.656 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.101 0.899 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 36.459 12.644 38.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.114 0.886 4 C -0.177 4.177 5 C -0.161 4.161 6 H 0.166 0.834 7 C 0.302 3.698 8 O -0.466 6.466 9 N -0.363 5.363 10 C 0.009 3.991 11 C -0.119 4.119 12 H 0.145 0.855 13 C -0.170 4.170 14 C -0.054 4.054 15 H 0.114 0.886 16 N -0.312 5.312 17 C -0.069 4.069 18 C 0.234 3.766 19 O -0.502 6.502 20 N -0.232 5.232 21 C -0.461 4.461 22 H 0.071 0.929 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.787 3.213 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.161 4.161 30 C -0.021 4.021 31 O -0.322 6.322 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.256 0.744 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.163 0.837 43 H 0.129 0.871 44 H 0.098 0.902 45 H 0.226 0.774 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.119 0.881 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.649 35.526 12.587 37.975 hybrid contribution 1.466 -0.807 -0.159 1.681 sum -3.183 34.719 12.428 37.013 Atomic orbital electron populations 1.21813 0.92894 1.02331 1.03586 1.23387 0.95816 0.95878 0.83690 0.88562 1.23183 0.94116 1.01018 0.99415 1.22804 1.01513 0.93748 0.97986 0.83384 1.20878 0.81232 0.89205 0.78529 1.90703 1.48354 1.65611 1.41899 1.45887 1.18305 1.15418 1.56723 1.21275 0.96217 0.82203 0.99399 1.22550 0.95641 0.97450 0.96305 0.85459 1.23175 1.01050 0.96404 0.96357 1.23202 0.98936 0.87998 0.95294 0.88588 1.60237 1.49023 1.04235 1.17726 1.21688 0.95298 0.91979 0.97935 1.21113 0.83436 0.90205 0.81867 1.90547 1.33746 1.64371 1.61537 1.42029 1.28644 1.14185 1.38342 1.19016 1.14042 0.90981 1.22074 0.92933 1.26158 1.01648 0.97291 0.96323 1.69811 1.40269 1.16681 1.30785 0.85331 0.77677 0.79789 0.78496 1.17994 1.20058 1.15329 1.23160 0.99315 0.97224 0.96445 1.23235 0.85132 1.01862 0.91828 1.88916 1.28740 1.74252 1.40327 0.89108 0.91476 0.93504 0.91553 0.87697 0.74450 0.91926 0.93709 0.89391 0.90695 0.83679 0.87091 0.90219 0.77395 0.91130 0.91775 0.89966 0.88109 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.66 71.98 0.70 -1.03 16 2 C 0.07 0.83 3.98 31.28 0.12 0.95 16 3 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.14 -1.78 5.96 31.90 0.19 -1.59 16 5 C -0.14 -1.44 3.44 -10.55 -0.04 -1.48 16 6 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 7 C 0.51 9.00 6.92 87.66 0.61 9.60 16 8 O -0.59 -16.39 15.43 -3.05 -0.05 -16.44 16 9 N -0.71 -8.69 5.53 -463.07 -2.56 -11.25 16 10 C 0.13 2.10 5.51 86.38 0.48 2.57 16 11 C -0.10 -1.16 3.76 -10.27 -0.04 -1.20 16 12 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 13 C -0.13 -2.00 7.21 31.12 0.22 -1.78 16 14 C 0.05 1.00 4.14 45.44 0.19 1.19 16 15 H 0.10 1.34 7.87 -2.38 -0.02 1.32 16 16 N -0.68 -19.37 6.18 -492.87 -3.05 -22.42 16 17 C 0.06 1.88 6.01 85.56 0.51 2.39 16 18 C 0.45 20.22 7.82 87.66 0.69 20.91 16 19 O -0.62 -34.88 15.78 -3.07 -0.05 -34.93 16 20 N -0.59 -27.89 5.09 -306.98 -1.56 -29.46 16 21 C -0.33 -19.66 10.16 84.04 0.85 -18.80 16 22 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 23 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 24 N -0.93 -56.73 13.96 21.67 0.30 -56.43 16 25 Si 0.97 38.51 27.74 68.60 1.90 40.41 16 26 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 29 C -0.12 -2.02 7.43 31.12 0.23 -1.78 16 30 C 0.06 0.63 7.35 72.35 0.53 1.16 16 31 O -0.40 -7.05 11.23 -148.98 -1.67 -8.72 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 1.32 6.79 -2.39 -0.02 1.31 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.42 2.09 8.47 -92.71 -0.79 1.30 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 0.98 7.84 -2.39 -0.02 0.96 16 40 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 42 H 0.34 10.67 8.25 -89.69 -0.74 9.93 16 43 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 45 H 0.39 15.06 5.76 -92.71 -0.53 14.53 16 46 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 47 H 0.06 1.47 7.90 -2.39 -0.02 1.45 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.08 1.00 7.67 -2.39 -0.02 0.98 16 Total: -1.00 -87.93 406.69 -2.17 -90.10 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -1.15 Total: 38.43 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.71 Total: 10.70 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -6.87 Total: -119.55 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -1.77 Total: -60.08 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -87.93 -2.17 -90.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707065404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.978 kcal (2) G-P(sol) polarization free energy of solvation -87.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds