Wall clock time and date at job start Tue Mar 31 2020 23:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00019 * 2 1 4 4 H 1.09008 * 110.67594 * 357.03467 * 3 2 1 5 5 O 1.44371 * 110.61709 * 234.06685 * 3 2 1 6 6 C 1.43744 * 106.97518 * 201.43811 * 5 3 2 7 7 C 1.54099 * 107.29534 * 26.51414 * 6 5 3 8 8 C 1.54809 * 104.18630 * 357.97005 * 7 6 5 9 9 H 1.09001 * 110.90738 * 97.35186 * 8 7 6 10 10 C 1.50702 * 110.90864 * 220.92057 * 8 7 6 11 11 O 1.21289 * 119.99966 * 118.54781 * 10 8 7 12 12 N 1.34777 * 120.00137 * 298.54646 * 10 8 7 13 13 C 1.46495 * 119.99882 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46892 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47013 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47106 * 55.00171 * 15 14 13 17 17 C 1.53001 * 109.46959 * 174.99831 * 15 14 13 18 18 N 1.46896 * 109.47611 * 295.00100 * 15 14 13 19 19 C 1.46899 * 111.00338 * 154.99681 * 18 15 14 20 20 C 1.50698 * 109.46987 * 179.97438 * 19 18 15 21 21 O 1.21293 * 120.00006 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.37104 * 119.99773 * 179.72591 * 22 20 19 24 24 H 1.08002 * 119.99671 * 0.27660 * 23 22 20 25 25 C 1.38950 * 120.00030 * 180.27703 * 23 22 20 26 26 N 1.31414 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99969 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47459 * 59.99812 * 27 25 23 29 29 H 1.48502 * 109.47317 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47211 * 300.00250 * 27 25 23 31 31 H 1.07997 * 120.00065 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.00289 * 0.02562 * 1 2 3 33 33 H 1.07997 * 119.99819 * 179.97438 * 2 1 3 34 34 H 1.09006 * 109.88252 * 267.09265 * 6 5 3 35 35 H 1.08998 * 110.00684 * 146.01082 * 6 5 3 36 36 H 1.09005 * 110.49248 * 239.29721 * 7 6 5 37 37 H 1.09003 * 110.49055 * 116.64783 * 7 6 5 38 38 H 0.96999 * 119.99354 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.47531 * 59.99788 * 13 12 10 40 40 H 1.09004 * 109.47264 * 299.99688 * 13 12 10 41 41 H 1.08999 * 109.47081 * 60.00139 * 14 13 12 42 42 H 1.08995 * 109.46968 * 299.99658 * 14 13 12 43 43 H 1.08999 * 109.46934 * 60.00235 * 17 15 14 44 44 H 1.08997 * 109.47040 * 180.02562 * 17 15 14 45 45 H 1.08998 * 109.47377 * 300.00167 * 17 15 14 46 46 H 1.00900 * 110.99693 * 31.04208 * 18 15 14 47 47 H 1.09003 * 109.46477 * 60.00383 * 19 18 15 48 48 H 1.08993 * 109.47002 * 300.00709 * 19 18 15 49 49 H 0.97001 * 120.00485 * 0.02562 * 22 20 19 50 50 H 0.96999 * 119.99863 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3739 2.1477 -0.0528 5 8 3.0044 1.3489 -1.0941 6 6 4.0002 2.3276 -0.7524 7 6 4.0581 2.4046 0.7856 8 6 2.9645 1.4152 1.2564 9 1 3.3983 0.4481 1.5106 10 6 2.1947 1.9796 2.4226 11 8 1.0022 2.1779 2.3231 12 7 2.8312 2.2639 3.5760 13 6 2.0826 2.8120 4.7098 14 6 3.0341 3.0420 5.8857 15 6 2.2525 3.6151 7.0696 16 1 1.4185 2.9550 7.3081 17 6 3.1765 3.7284 8.2838 18 7 1.7388 4.9459 6.7193 19 6 0.5490 5.2772 7.5146 20 6 0.0521 6.6466 7.1287 21 8 0.6319 7.2837 6.2747 22 7 -1.0370 7.1629 7.7317 23 6 -1.4858 8.4110 7.3846 24 1 -0.9691 8.9786 6.6249 25 6 -2.6053 8.9457 8.0104 26 7 -3.2336 8.2552 8.9352 27 14 -3.2171 10.6460 7.5370 28 1 -3.5707 10.6611 6.0948 29 1 -4.4166 10.9831 8.3449 30 1 -2.1498 11.6458 7.7954 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5401 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.7213 3.2987 -1.1618 35 1 4.9708 2.0250 -1.1452 36 1 3.8306 3.4149 1.1259 37 1 5.0376 2.0909 1.1467 38 1 3.7847 2.1049 3.6556 39 1 1.3039 2.1088 5.0052 40 1 1.6265 3.7588 4.4205 41 1 3.8130 3.7451 5.5906 42 1 3.4898 2.0951 6.1749 43 1 4.0104 4.3885 8.0454 44 1 2.6195 4.1362 9.1274 45 1 3.5576 2.7408 8.5439 46 1 1.5427 5.0093 5.7315 47 1 0.8064 5.2696 8.5738 48 1 -0.2314 4.5403 7.3250 49 1 -1.5009 6.6532 8.4143 50 1 -4.0154 8.6283 9.3718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713417481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:16 Heat of formation + Delta-G solvation = -104.237957 kcal Electronic energy + Delta-G solvation = -29100.663973 eV Core-core repulsion = 24935.067185 eV Total energy + Delta-G solvation = -4165.596788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79681 -39.01001 -38.41732 -37.16656 -34.95940 -34.09501 -33.88429 -32.84557 -31.49987 -31.05101 -29.30027 -28.61559 -26.41879 -24.63252 -23.86173 -22.90283 -22.46983 -20.85091 -20.35899 -20.09345 -19.23559 -17.90594 -17.80483 -16.75182 -16.52997 -16.16227 -16.06138 -15.75356 -15.47857 -15.03109 -14.88521 -14.48622 -14.18536 -13.96208 -13.89220 -13.77050 -13.64473 -13.46482 -13.17663 -12.79136 -12.51612 -12.27610 -12.18804 -11.88434 -11.87838 -11.70048 -11.57576 -11.47104 -11.31033 -11.26755 -11.23329 -11.03230 -10.79159 -10.42657 -10.19675 -10.18089 -10.02117 -9.67233 -9.48124 -9.33916 -8.43430 -8.07365 -7.94054 -6.39723 -3.80497 1.90759 2.33529 2.79059 3.21800 3.27167 3.31795 3.60828 3.92794 4.01655 4.09610 4.16535 4.32152 4.33395 4.54775 4.63369 4.71690 4.77371 4.85028 4.90748 4.93664 4.99965 5.12088 5.26743 5.29555 5.32040 5.35946 5.38095 5.45000 5.52028 5.54003 5.65371 5.68099 5.78578 5.81749 5.87069 5.99849 6.04017 6.13825 6.25132 6.31486 6.34781 6.39022 6.56327 7.16853 7.23541 7.56917 7.65608 7.92738 8.08098 8.63289 9.19722 9.56294 10.07828 10.78006 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.002073 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.056828 B =13502.688238 C =14743.136098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.160 4.160 3 C 0.126 3.874 4 H 0.088 0.912 5 O -0.369 6.369 6 C 0.047 3.953 7 C -0.149 4.149 8 C -0.138 4.138 9 H 0.113 0.887 10 C 0.522 3.478 11 O -0.527 6.527 12 N -0.726 5.726 13 C 0.112 3.888 14 C -0.132 4.132 15 C 0.086 3.914 16 H 0.045 0.955 17 C -0.139 4.139 18 N -0.666 5.666 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.400 0.600 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.349 0.651 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.422 -19.400 -11.138 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.178 4.178 3 C 0.069 3.931 4 H 0.106 0.894 5 O -0.288 6.288 6 C -0.030 4.030 7 C -0.187 4.187 8 C -0.160 4.160 9 H 0.131 0.869 10 C 0.307 3.693 11 O -0.403 6.403 12 N -0.378 5.378 13 C -0.012 4.012 14 C -0.170 4.170 15 C -0.025 4.025 16 H 0.063 0.937 17 C -0.197 4.197 18 N -0.301 5.301 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.234 0.766 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.170 0.830 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.170 -18.548 -11.446 26.555 hybrid contribution -0.809 0.012 0.270 0.853 sum 14.361 -18.536 -11.177 25.976 Atomic orbital electron populations 1.23950 0.95751 1.02481 0.96705 1.22524 0.95732 0.96673 1.02915 1.21998 0.90457 0.97360 0.83289 0.89431 1.88934 1.38481 1.60274 1.41133 1.23140 0.92964 0.93114 0.93742 1.22988 0.98915 1.00143 0.96627 1.22897 0.97088 1.01127 0.94854 0.86883 1.20183 0.87822 0.77895 0.83361 1.90759 1.14912 1.52067 1.82536 1.45955 1.12482 1.66126 1.13231 1.21504 0.94841 0.99506 0.85314 1.21978 0.98909 1.01846 0.94267 1.21455 0.96676 0.89720 0.94627 0.93742 1.21783 0.99806 1.00915 0.97186 1.60206 1.33039 1.26186 1.10639 1.21725 0.91288 0.96157 0.99119 1.19811 0.83311 0.88215 0.86045 1.90519 1.58812 1.62299 1.35160 1.41860 1.24898 1.17083 1.36190 1.19654 1.09979 0.92635 1.20621 0.87998 1.25261 0.96541 1.00000 0.96150 1.69606 1.20708 1.38444 1.25607 0.85916 0.78032 0.81721 0.78539 1.19906 1.20979 1.19894 0.87890 0.87874 0.86901 0.91844 0.89344 0.89732 0.89357 0.76583 0.91401 0.90834 0.90041 0.90650 0.91849 0.92373 0.92899 0.82987 0.89574 0.93849 0.77462 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 14.33 29.01 0.42 -1.01 16 2 C -0.16 -1.52 9.24 -36.03 -0.33 -1.86 16 3 C 0.13 1.27 2.73 -26.83 -0.07 1.19 16 4 H 0.09 1.03 7.25 -51.92 -0.38 0.65 16 5 O -0.37 -3.75 11.21 -35.23 -0.39 -4.14 16 6 C 0.05 0.34 7.70 37.73 0.29 0.63 16 7 C -0.15 -0.91 6.55 -25.20 -0.17 -1.08 16 8 C -0.14 -1.10 2.94 -89.76 -0.26 -1.37 16 9 H 0.11 0.71 8.05 -51.93 -0.42 0.29 16 10 C 0.52 5.56 7.05 -10.98 -0.08 5.48 16 11 O -0.53 -7.90 15.80 5.55 0.09 -7.81 16 12 N -0.73 -6.17 5.50 -60.29 -0.33 -6.51 16 13 C 0.11 1.16 5.50 -4.04 -0.02 1.13 16 14 C -0.13 -1.15 4.92 -26.73 -0.13 -1.28 16 15 C 0.09 0.98 2.65 -67.71 -0.18 0.80 16 16 H 0.04 0.50 7.80 -51.93 -0.40 0.10 16 17 C -0.14 -1.46 9.41 37.16 0.35 -1.11 16 18 N -0.67 -10.53 5.93 -108.00 -0.64 -11.17 16 19 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16 20 C 0.44 10.59 7.82 -10.99 -0.09 10.50 16 21 O -0.58 -16.10 15.78 5.55 0.09 -16.01 16 22 N -0.56 -14.55 5.29 -10.96 -0.06 -14.60 16 23 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 24 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 27 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 30 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 31 H 0.10 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.10 1.06 7.87 -52.48 -0.41 0.65 16 33 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.40 2.15 8.47 -40.82 -0.35 1.81 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.35 5.83 6.17 -39.29 -0.24 5.59 16 47 H 0.09 1.42 7.44 -51.93 -0.39 1.03 16 48 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 50 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 412.87 15.07 6.22 6.22 Total: -1.00 -34.59 412.87 -8.07 -42.66 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -8.19 Total: 14.38 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.55 Total: 4.76 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.31 Total: -56.41 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.22 Total: -27.96 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.59 -8.07 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713417481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.581 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds