Wall clock time and date at job start Tue Mar 31 2020 23:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00019 * 2 1 4 4 H 1.09008 * 110.67594 * 357.03467 * 3 2 1 5 5 O 1.44371 * 110.61709 * 234.06685 * 3 2 1 6 6 C 1.43744 * 106.97518 * 201.43811 * 5 3 2 7 7 C 1.54099 * 107.29534 * 26.51414 * 6 5 3 8 8 C 1.54809 * 104.18630 * 357.97005 * 7 6 5 9 9 H 1.09001 * 110.90738 * 97.35186 * 8 7 6 10 10 C 1.50702 * 110.90864 * 220.92057 * 8 7 6 11 11 O 1.21289 * 119.99966 * 118.54781 * 10 8 7 12 12 N 1.34777 * 120.00137 * 298.54646 * 10 8 7 13 13 C 1.46495 * 119.99882 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46892 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47013 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47106 * 55.00171 * 15 14 13 17 17 C 1.53001 * 109.46959 * 174.99831 * 15 14 13 18 18 N 1.46896 * 109.47611 * 295.00100 * 15 14 13 19 19 C 1.46899 * 111.00338 * 154.99681 * 18 15 14 20 20 C 1.50698 * 109.46987 * 179.97438 * 19 18 15 21 21 O 1.21293 * 120.00006 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.37104 * 119.99773 * 179.72591 * 22 20 19 24 24 H 1.08002 * 119.99671 * 0.27660 * 23 22 20 25 25 C 1.38950 * 120.00030 * 180.27703 * 23 22 20 26 26 N 1.31414 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99969 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47459 * 59.99812 * 27 25 23 29 29 H 1.48502 * 109.47317 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47211 * 300.00250 * 27 25 23 31 31 H 1.07997 * 120.00065 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.00289 * 0.02562 * 1 2 3 33 33 H 1.07997 * 119.99819 * 179.97438 * 2 1 3 34 34 H 1.09006 * 109.88252 * 267.09265 * 6 5 3 35 35 H 1.08998 * 110.00684 * 146.01082 * 6 5 3 36 36 H 1.09005 * 110.49248 * 239.29721 * 7 6 5 37 37 H 1.09003 * 110.49055 * 116.64783 * 7 6 5 38 38 H 0.96999 * 119.99354 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.47531 * 59.99788 * 13 12 10 40 40 H 1.09004 * 109.47264 * 299.99688 * 13 12 10 41 41 H 1.08999 * 109.47081 * 60.00139 * 14 13 12 42 42 H 1.08995 * 109.46968 * 299.99658 * 14 13 12 43 43 H 1.08999 * 109.46934 * 60.00235 * 17 15 14 44 44 H 1.08997 * 109.47040 * 180.02562 * 17 15 14 45 45 H 1.08998 * 109.47377 * 300.00167 * 17 15 14 46 46 H 1.00900 * 110.99693 * 31.04208 * 18 15 14 47 47 H 1.09003 * 109.46477 * 60.00383 * 19 18 15 48 48 H 1.08993 * 109.47002 * 300.00709 * 19 18 15 49 49 H 0.97001 * 120.00485 * 0.02562 * 22 20 19 50 50 H 0.96999 * 119.99863 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3739 2.1477 -0.0528 5 8 3.0044 1.3489 -1.0941 6 6 4.0002 2.3276 -0.7524 7 6 4.0581 2.4046 0.7856 8 6 2.9645 1.4152 1.2564 9 1 3.3983 0.4481 1.5106 10 6 2.1947 1.9796 2.4226 11 8 1.0022 2.1779 2.3231 12 7 2.8312 2.2639 3.5760 13 6 2.0826 2.8120 4.7098 14 6 3.0341 3.0420 5.8857 15 6 2.2525 3.6151 7.0696 16 1 1.4185 2.9550 7.3081 17 6 3.1765 3.7284 8.2838 18 7 1.7388 4.9459 6.7193 19 6 0.5490 5.2772 7.5146 20 6 0.0521 6.6466 7.1287 21 8 0.6319 7.2837 6.2747 22 7 -1.0370 7.1629 7.7317 23 6 -1.4858 8.4110 7.3846 24 1 -0.9691 8.9786 6.6249 25 6 -2.6053 8.9457 8.0104 26 7 -3.2336 8.2552 8.9352 27 14 -3.2171 10.6460 7.5370 28 1 -3.5707 10.6611 6.0948 29 1 -4.4166 10.9831 8.3449 30 1 -2.1498 11.6458 7.7954 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5401 0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 3.7213 3.2987 -1.1618 35 1 4.9708 2.0250 -1.1452 36 1 3.8306 3.4149 1.1259 37 1 5.0376 2.0909 1.1467 38 1 3.7847 2.1049 3.6556 39 1 1.3039 2.1088 5.0052 40 1 1.6265 3.7588 4.4205 41 1 3.8130 3.7451 5.5906 42 1 3.4898 2.0951 6.1749 43 1 4.0104 4.3885 8.0454 44 1 2.6195 4.1362 9.1274 45 1 3.5576 2.7408 8.5439 46 1 1.5427 5.0093 5.7315 47 1 0.8064 5.2696 8.5738 48 1 -0.2314 4.5403 7.3250 49 1 -1.5009 6.6532 8.4143 50 1 -4.0154 8.6283 9.3718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713417481.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:15 Heat of formation + Delta-G solvation = -131.691364 kcal Electronic energy + Delta-G solvation = -29101.854442 eV Core-core repulsion = 24935.067185 eV Total energy + Delta-G solvation = -4166.787257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56051 -40.27991 -39.69518 -38.36337 -36.10390 -35.75830 -34.81579 -33.61091 -33.29758 -32.41210 -30.06741 -29.32513 -28.08428 -25.97144 -25.11410 -23.64043 -23.13777 -21.70111 -21.20187 -21.09305 -20.86570 -19.93928 -18.58751 -17.89277 -17.40946 -17.28706 -16.93046 -16.77471 -16.68647 -16.43430 -15.99899 -15.89139 -15.54795 -15.25815 -14.93237 -14.62936 -14.53218 -14.37542 -14.30973 -14.06825 -13.55208 -13.51391 -13.36401 -13.16605 -12.92095 -12.87864 -12.60108 -12.46874 -12.45868 -12.26381 -12.21500 -12.12615 -12.02734 -11.90446 -11.73919 -11.52379 -10.98909 -10.75991 -10.40974 -10.36908 -10.17809 -10.04187 -9.33861 -8.48618 -5.97698 1.18166 1.38043 1.39666 1.50944 1.51403 2.02386 2.03361 2.27532 2.91796 2.94784 3.18323 3.41309 3.48861 3.49953 3.72288 3.80168 3.94994 4.03363 4.06549 4.12189 4.21425 4.26245 4.28598 4.38496 4.43106 4.47700 4.53452 4.60239 4.67844 4.70579 4.80165 4.84717 4.95271 4.96250 5.01297 5.02395 5.04883 5.19641 5.35810 5.38338 5.47450 5.56655 5.71709 5.86843 5.89717 6.11822 6.39579 6.47456 6.57692 7.10011 7.17570 7.53425 8.08781 8.68638 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.002073 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.056828 B =13502.688238 C =14743.136098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.164 4.164 3 C 0.120 3.880 4 H 0.056 0.944 5 O -0.385 6.385 6 C 0.039 3.961 7 C -0.141 4.141 8 C -0.128 4.128 9 H 0.141 0.859 10 C 0.518 3.482 11 O -0.579 6.579 12 N -0.709 5.709 13 C 0.116 3.884 14 C -0.117 4.117 15 C 0.082 3.918 16 H 0.051 0.949 17 C -0.136 4.136 18 N -0.679 5.679 19 C 0.064 3.936 20 C 0.436 3.564 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.273 1.273 29 H -0.269 1.269 30 H -0.271 1.271 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.419 0.581 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.340 0.660 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.447 -21.086 -10.457 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.062 3.938 4 H 0.074 0.926 5 O -0.305 6.305 6 C -0.038 4.038 7 C -0.179 4.179 8 C -0.149 4.149 9 H 0.159 0.841 10 C 0.305 3.695 11 O -0.458 6.458 12 N -0.361 5.361 13 C -0.008 4.008 14 C -0.154 4.154 15 C -0.028 4.028 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.314 5.314 19 C -0.068 4.068 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.210 5.210 23 C -0.465 4.465 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.198 1.198 29 H -0.193 1.193 30 H -0.196 1.196 31 H 0.141 0.859 32 H 0.102 0.898 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.257 0.743 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.161 0.839 47 H 0.123 0.877 48 H 0.079 0.921 49 H 0.230 0.770 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.245 -20.263 -10.731 28.691 hybrid contribution -1.401 0.522 0.033 1.495 sum 15.844 -19.742 -10.697 27.481 Atomic orbital electron populations 1.24046 0.96118 1.02538 0.97309 1.22739 0.95812 0.97209 1.02396 1.21928 0.90632 0.96617 0.84584 0.92566 1.88913 1.39020 1.61018 1.41558 1.23372 0.93291 0.92468 0.94642 1.23016 0.99915 0.99182 0.95757 1.22870 0.96725 1.02744 0.92609 0.84114 1.20707 0.87366 0.77169 0.84297 1.90745 1.17332 1.54334 1.83430 1.45783 1.13315 1.64891 1.12152 1.21343 0.95366 0.97706 0.86423 1.21884 0.97933 1.03366 0.92261 1.21643 0.97307 0.87589 0.96237 0.93098 1.21775 0.99074 1.02501 0.96001 1.60258 1.31852 1.29411 1.09873 1.21578 0.92636 0.92325 1.00270 1.20921 0.82076 0.90041 0.84612 1.90482 1.59768 1.64075 1.36724 1.41941 1.25692 1.16710 1.36701 1.19630 1.11286 0.94116 1.21496 0.90409 1.26061 0.96013 1.03520 0.95709 1.69667 1.20870 1.39771 1.25758 0.84985 0.77862 0.77149 0.78320 1.19821 1.19306 1.19581 0.85936 0.89823 0.84842 0.92472 0.86853 0.90723 0.85714 0.74298 0.92298 0.94159 0.89771 0.87161 0.92498 0.93612 0.89842 0.83936 0.87718 0.92115 0.76977 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 14.33 67.78 0.97 -2.22 16 2 C -0.16 -3.07 9.24 25.65 0.24 -2.83 16 3 C 0.12 2.43 2.73 30.53 0.08 2.52 16 4 H 0.06 1.46 7.25 -2.38 -0.02 1.45 16 5 O -0.39 -7.59 11.21 -148.98 -1.67 -9.26 16 6 C 0.04 0.49 7.70 72.35 0.56 1.05 16 7 C -0.14 -1.42 6.55 31.58 0.21 -1.21 16 8 C -0.13 -1.86 2.94 -10.24 -0.03 -1.89 16 9 H 0.14 1.29 8.05 -2.39 -0.02 1.27 16 10 C 0.52 10.83 7.05 87.66 0.62 11.45 16 11 O -0.58 -18.21 15.80 -3.06 -0.05 -18.26 16 12 N -0.71 -10.93 5.50 -463.05 -2.55 -13.48 16 13 C 0.12 2.30 5.50 86.38 0.48 2.78 16 14 C -0.12 -1.73 4.92 30.60 0.15 -1.58 16 15 C 0.08 1.70 2.65 44.92 0.12 1.82 16 16 H 0.05 1.03 7.80 -2.39 -0.02 1.01 16 17 C -0.14 -2.49 9.41 71.98 0.68 -1.81 16 18 N -0.68 -21.21 5.93 -495.59 -2.94 -24.15 16 19 C 0.06 2.28 5.97 85.56 0.51 2.79 16 20 C 0.44 21.48 7.82 87.66 0.69 22.16 16 21 O -0.62 -35.68 15.78 -3.07 -0.05 -35.73 16 22 N -0.57 -30.37 5.29 -306.98 -1.62 -31.99 16 23 C -0.34 -19.60 9.68 84.04 0.81 -18.78 16 24 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 25 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 26 N -0.92 -50.59 13.05 21.66 0.28 -50.31 16 27 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 28 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 29 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 30 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 31 H 0.12 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.08 1.93 7.87 -2.91 -0.02 1.90 16 33 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.92 7.85 -2.38 -0.02 0.90 16 37 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.42 3.16 8.47 -92.71 -0.79 2.38 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 1.09 6.43 -2.39 -0.02 1.07 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 0.95 7.45 -2.39 -0.02 0.93 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.34 11.62 6.17 -89.69 -0.55 11.07 16 47 H 0.10 3.33 7.44 -2.39 -0.02 3.31 16 48 H 0.06 1.95 8.05 -2.39 -0.02 1.93 16 49 H 0.40 19.90 7.90 -92.71 -0.73 19.16 16 50 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -78.93 412.87 -1.14 -80.07 By element: Atomic # 1 Polarization: 44.34 SS G_CDS: -1.11 Total: 43.22 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.54 Total: 13.99 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -6.83 Total: -119.93 kcal Atomic # 8 Polarization: -61.48 SS G_CDS: -1.77 Total: -63.25 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -78.93 -1.14 -80.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713417481.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.626 kcal (2) G-P(sol) polarization free energy of solvation -78.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds