Wall clock time and date at job start Tue Mar 31 2020 23:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99969 * 2 1 4 4 C 1.50696 * 120.00288 * 179.97438 * 2 1 3 5 5 H 1.09010 * 110.42242 * 127.66455 * 4 2 1 6 6 O 1.44425 * 110.37484 * 5.35652 * 4 2 1 7 7 C 1.44420 * 105.27841 * 200.65745 * 6 4 2 8 8 C 1.54801 * 104.85809 * 40.45902 * 7 6 4 9 9 C 1.54480 * 110.37261 * 249.97473 * 4 2 1 10 10 H 1.09004 * 110.50890 * 261.58682 * 9 4 2 11 11 C 1.50698 * 110.51094 * 24.16305 * 9 4 2 12 12 O 1.21279 * 119.99960 * 67.10428 * 11 9 4 13 13 N 1.34773 * 119.99869 * 247.09666 * 11 9 4 14 14 C 1.46506 * 119.99746 * 179.72190 * 13 11 9 15 15 H 1.08998 * 109.46756 * 35.00841 * 14 13 11 16 16 C 1.52995 * 109.47240 * 275.00743 * 14 13 11 17 17 C 1.53000 * 109.46878 * 155.00304 * 14 13 11 18 18 N 1.46903 * 109.47065 * 305.00337 * 17 14 13 19 19 C 1.46904 * 110.99763 * 179.97438 * 18 17 14 20 20 C 1.50699 * 109.46938 * 179.97438 * 19 18 17 21 21 O 1.21285 * 120.00073 * 0.02562 * 20 19 18 22 22 N 1.34779 * 119.99806 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99852 * 180.02562 * 22 20 19 24 24 H 1.07994 * 119.99941 * 359.97438 * 23 22 20 25 25 C 1.38953 * 120.00022 * 179.97438 * 23 22 20 26 26 N 1.31411 * 120.00587 * 179.97438 * 25 23 22 27 27 Si 1.86807 * 119.99838 * 359.97438 * 25 23 22 28 28 H 1.48490 * 109.47246 * 89.99856 * 27 25 23 29 29 H 1.48502 * 109.46760 * 210.00314 * 27 25 23 30 30 H 1.48501 * 109.47031 * 329.99741 * 27 25 23 31 31 H 1.07997 * 120.00094 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99380 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47349 * 155.06717 * 3 2 1 34 34 H 1.09000 * 109.46782 * 275.06427 * 3 2 1 35 35 H 1.08998 * 109.46637 * 35.05994 * 3 2 1 36 36 H 1.09003 * 110.37651 * 159.34009 * 7 6 4 37 37 H 1.09000 * 110.37225 * 281.56755 * 7 6 4 38 38 H 1.09000 * 110.61083 * 217.51204 * 8 7 6 39 39 H 1.08997 * 110.55492 * 94.70142 * 8 7 6 40 40 H 0.97000 * 120.00426 * 0.02562 * 13 11 9 41 41 H 1.09003 * 109.47112 * 180.02562 * 16 14 13 42 42 H 1.09004 * 109.46894 * 299.99819 * 16 14 13 43 43 H 1.08995 * 109.47218 * 60.00029 * 16 14 13 44 44 H 1.08996 * 109.46952 * 65.00369 * 17 14 13 45 45 H 1.08999 * 109.47090 * 185.00254 * 17 14 13 46 46 H 1.00899 * 110.99999 * 303.95401 * 18 17 14 47 47 H 1.08999 * 109.47193 * 300.00449 * 19 18 17 48 48 H 1.09001 * 109.46918 * 60.00066 * 19 18 17 49 49 H 0.97007 * 119.99880 * 359.97438 * 22 20 19 50 50 H 0.96995 * 120.00290 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 2.7943 -1.3227 -0.8081 6 8 1.1476 -2.4146 -0.1253 7 6 1.8689 -3.5620 0.3736 8 6 2.6341 -3.0411 1.6144 9 6 2.7619 -1.5222 1.3613 10 1 3.8109 -1.2317 1.3028 11 6 2.0598 -0.7453 2.4451 12 8 0.9353 -1.0524 2.7799 13 7 2.6816 0.2906 3.0423 14 6 1.9967 1.0496 4.0917 15 1 1.3698 0.3766 4.6765 16 6 1.1247 2.1318 3.4519 17 6 3.0335 1.7047 5.0064 18 7 3.9458 0.6777 5.5269 19 6 4.9577 1.2716 6.4108 20 6 5.8729 0.1901 6.9246 21 8 5.6995 -0.9619 6.5872 22 7 6.8840 0.5031 7.7590 23 6 7.7168 -0.4807 8.2259 24 1 7.5625 -1.5064 7.9255 25 6 8.7596 -0.1580 9.0858 26 7 9.5577 -1.1009 9.5338 27 14 9.0270 1.6165 9.6049 28 1 8.2520 1.8928 10.8410 29 1 10.4713 1.8438 9.8648 30 1 8.5704 2.5234 8.5212 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 3.0522 1.1539 0.4332 34 1 2.1666 1.6651 -1.0237 35 1 1.5166 2.0403 0.5903 36 1 1.1744 -4.3519 0.6598 37 1 2.5684 -3.9269 -0.3785 38 1 3.6199 -3.5018 1.6786 39 1 2.0631 -3.2301 2.5233 40 1 3.5808 0.5364 2.7744 41 1 0.6155 2.6968 4.2326 42 1 1.7517 2.8048 2.8670 43 1 0.3861 1.6650 2.8002 44 1 3.6020 2.4430 4.4410 45 1 2.5265 2.1952 5.8374 46 1 3.4357 -0.0529 6.0002 47 1 5.5396 2.0067 5.8548 48 1 4.4644 1.7594 7.2516 49 1 7.0228 1.4246 8.0285 50 1 10.2853 -0.8757 10.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715951906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:50 Heat of formation + Delta-G solvation = -93.825793 kcal Electronic energy + Delta-G solvation = -30389.693020 eV Core-core repulsion = 26224.547737 eV Total energy + Delta-G solvation = -4165.145283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80764 -38.86989 -38.39810 -36.58863 -35.22950 -34.32550 -33.72042 -32.59448 -31.69641 -30.85699 -28.79037 -27.79553 -27.34628 -25.13578 -24.23755 -23.15758 -22.53426 -21.01005 -20.33474 -19.41369 -18.83054 -18.37025 -17.42356 -16.85256 -16.22255 -16.07361 -15.84194 -15.51929 -15.18416 -14.92893 -14.78100 -14.36502 -14.13221 -14.02903 -13.72011 -13.47572 -13.38462 -13.27961 -13.19550 -12.72149 -12.64946 -12.37302 -12.25923 -12.13021 -12.05423 -11.82666 -11.72215 -11.67430 -11.48668 -11.33722 -11.19755 -11.03405 -10.98175 -10.63124 -10.06153 -10.01099 -9.65687 -9.60923 -9.17185 -8.94471 -8.64197 -8.25512 -8.19875 -6.34438 -3.86085 2.08437 2.69458 2.99055 3.03440 3.12018 3.15813 3.61377 3.70011 3.99540 4.07168 4.23214 4.55393 4.60919 4.72847 4.78376 4.80644 4.91027 4.98595 5.03616 5.06598 5.15848 5.17364 5.24304 5.27631 5.32241 5.36270 5.45000 5.50064 5.51698 5.56031 5.57671 5.65491 5.71977 5.75311 5.85701 5.87595 5.89314 5.93800 6.04077 6.42271 6.50354 6.54329 6.85192 6.99405 7.47305 7.54561 7.60822 8.10847 8.34583 8.56073 8.91495 9.38777 9.78815 10.78662 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.002367 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.493609 B =11827.433061 C =12820.978801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.151 4.151 3 C -0.111 4.111 4 C 0.133 3.867 5 H 0.083 0.917 6 O -0.360 6.360 7 C 0.049 3.951 8 C -0.139 4.139 9 C -0.137 4.137 10 H 0.101 0.899 11 C 0.534 3.466 12 O -0.535 6.535 13 N -0.706 5.706 14 C 0.147 3.853 15 H 0.085 0.915 16 C -0.160 4.160 17 C 0.048 3.952 18 N -0.666 5.666 19 C 0.048 3.952 20 C 0.449 3.551 21 O -0.564 6.564 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.119 0.881 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.403 0.597 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.352 0.648 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.016 7.809 -18.440 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.074 3.926 5 H 0.100 0.900 6 O -0.279 6.279 7 C -0.028 4.028 8 C -0.177 4.177 9 C -0.159 4.159 10 H 0.119 0.881 11 C 0.319 3.681 12 O -0.411 6.411 13 N -0.358 5.358 14 C 0.042 3.958 15 H 0.103 0.897 16 C -0.219 4.219 17 C -0.082 4.082 18 N -0.299 5.299 19 C -0.085 4.085 20 C 0.235 3.765 21 O -0.446 6.446 22 N -0.230 5.230 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.707 3.293 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.237 0.763 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.172 0.828 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.562 6.750 -18.899 25.395 hybrid contribution 0.697 1.733 1.417 2.344 sum -14.865 8.483 -17.482 24.465 Atomic orbital electron populations 1.23653 0.95342 1.01997 0.97291 1.21399 0.95824 0.93729 1.04182 1.20781 1.00018 0.94039 1.01929 1.21591 0.90417 0.86424 0.94137 0.89984 1.89129 1.37315 1.16896 1.84555 1.23446 0.95668 0.89595 0.94111 1.22968 1.02080 0.92175 1.00475 1.22699 1.01105 0.97020 0.95026 0.88090 1.19964 0.86278 0.79849 0.81960 1.90682 1.18687 1.67801 1.63946 1.45854 1.19103 1.32209 1.38595 1.20874 0.93207 0.93161 0.88561 0.89719 1.22157 1.00018 0.98404 1.01357 1.22318 0.93809 0.94547 0.97523 1.60048 1.16435 1.11903 1.41479 1.21713 0.94657 0.96756 0.95372 1.19699 0.83848 0.89765 0.83213 1.90570 1.73108 1.20687 1.60197 1.42212 1.28176 1.09245 1.43364 1.19423 1.07182 0.91698 1.25107 0.86308 1.25047 0.96120 0.97959 0.97050 1.69618 1.17476 1.32283 1.32706 0.86665 0.78893 0.84435 0.79341 1.19669 1.20157 1.19496 0.88882 0.87333 0.92009 0.91619 0.91458 0.88791 0.92102 0.89523 0.89386 0.76266 0.91865 0.92416 0.91722 0.90518 0.93992 0.82806 0.89503 0.93762 0.79712 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 13.32 29.01 0.39 -1.19 16 2 C -0.15 -1.50 3.78 -101.06 -0.38 -1.88 16 3 C -0.11 -0.84 9.67 36.01 0.35 -0.49 16 4 C 0.13 1.33 3.53 -27.11 -0.10 1.24 16 5 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 6 O -0.36 -4.25 9.82 -35.23 -0.35 -4.59 16 7 C 0.05 0.46 7.64 38.11 0.29 0.75 16 8 C -0.14 -1.43 6.63 -24.99 -0.17 -1.60 16 9 C -0.14 -1.41 3.25 -90.20 -0.29 -1.70 16 10 H 0.10 0.85 8.00 -51.93 -0.42 0.44 16 11 C 0.53 6.59 4.77 -10.99 -0.05 6.54 16 12 O -0.53 -8.44 15.59 5.56 0.09 -8.36 16 13 N -0.71 -7.46 4.80 -53.81 -0.26 -7.72 16 14 C 0.15 1.52 2.82 -67.93 -0.19 1.33 16 15 H 0.08 1.06 7.57 -51.93 -0.39 0.67 16 16 C -0.16 -1.37 9.44 37.16 0.35 -1.02 16 17 C 0.05 0.49 5.24 -3.82 -0.02 0.47 16 18 N -0.67 -9.33 5.85 -115.06 -0.67 -10.01 16 19 C 0.05 0.73 6.17 -4.97 -0.03 0.70 16 20 C 0.45 9.84 7.82 -10.98 -0.09 9.75 16 21 O -0.56 -14.75 15.78 5.55 0.09 -14.67 16 22 N -0.59 -13.72 5.09 -10.97 -0.06 -13.77 16 23 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 24 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 25 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.50 13.96 55.50 0.77 -24.73 16 27 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 28 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 29 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 30 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 31 H 0.09 0.86 8.05 -52.49 -0.42 0.44 16 32 H 0.11 1.35 6.90 -52.49 -0.36 0.99 16 33 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.50 8.05 -51.93 -0.42 0.09 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.09 7.38 -51.93 -0.38 0.71 16 40 H 0.40 3.84 8.50 -40.82 -0.35 3.49 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.35 5.53 8.43 -39.29 -0.33 5.20 16 47 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 50 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 409.06 15.07 6.16 6.16 Total: -1.00 -34.35 409.06 -7.47 -41.82 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -8.35 Total: 16.31 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.19 Total: 5.23 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.21 Total: -56.23 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.17 Total: -27.62 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.35 -7.47 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715951906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.003 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds