Wall clock time and date at job start Tue Mar 31 2020 23:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99969 * 2 1 4 4 C 1.50696 * 120.00288 * 179.97438 * 2 1 3 5 5 H 1.09010 * 110.42242 * 127.66455 * 4 2 1 6 6 O 1.44425 * 110.37484 * 5.35652 * 4 2 1 7 7 C 1.44420 * 105.27841 * 200.65745 * 6 4 2 8 8 C 1.54801 * 104.85809 * 40.45902 * 7 6 4 9 9 C 1.54480 * 110.37261 * 249.97473 * 4 2 1 10 10 H 1.09004 * 110.50890 * 261.58682 * 9 4 2 11 11 C 1.50698 * 110.51094 * 24.16305 * 9 4 2 12 12 O 1.21279 * 119.99960 * 67.10428 * 11 9 4 13 13 N 1.34773 * 119.99869 * 247.09666 * 11 9 4 14 14 C 1.46506 * 119.99746 * 179.72190 * 13 11 9 15 15 H 1.08998 * 109.46756 * 35.00841 * 14 13 11 16 16 C 1.52995 * 109.47240 * 275.00743 * 14 13 11 17 17 C 1.53000 * 109.46878 * 155.00304 * 14 13 11 18 18 N 1.46903 * 109.47065 * 305.00337 * 17 14 13 19 19 C 1.46904 * 110.99763 * 179.97438 * 18 17 14 20 20 C 1.50699 * 109.46938 * 179.97438 * 19 18 17 21 21 O 1.21285 * 120.00073 * 0.02562 * 20 19 18 22 22 N 1.34779 * 119.99806 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99852 * 180.02562 * 22 20 19 24 24 H 1.07994 * 119.99941 * 359.97438 * 23 22 20 25 25 C 1.38953 * 120.00022 * 179.97438 * 23 22 20 26 26 N 1.31411 * 120.00587 * 179.97438 * 25 23 22 27 27 Si 1.86807 * 119.99838 * 359.97438 * 25 23 22 28 28 H 1.48490 * 109.47246 * 89.99856 * 27 25 23 29 29 H 1.48502 * 109.46760 * 210.00314 * 27 25 23 30 30 H 1.48501 * 109.47031 * 329.99741 * 27 25 23 31 31 H 1.07997 * 120.00094 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99380 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47349 * 155.06717 * 3 2 1 34 34 H 1.09000 * 109.46782 * 275.06427 * 3 2 1 35 35 H 1.08998 * 109.46637 * 35.05994 * 3 2 1 36 36 H 1.09003 * 110.37651 * 159.34009 * 7 6 4 37 37 H 1.09000 * 110.37225 * 281.56755 * 7 6 4 38 38 H 1.09000 * 110.61083 * 217.51204 * 8 7 6 39 39 H 1.08997 * 110.55492 * 94.70142 * 8 7 6 40 40 H 0.97000 * 120.00426 * 0.02562 * 13 11 9 41 41 H 1.09003 * 109.47112 * 180.02562 * 16 14 13 42 42 H 1.09004 * 109.46894 * 299.99819 * 16 14 13 43 43 H 1.08995 * 109.47218 * 60.00029 * 16 14 13 44 44 H 1.08996 * 109.46952 * 65.00369 * 17 14 13 45 45 H 1.08999 * 109.47090 * 185.00254 * 17 14 13 46 46 H 1.00899 * 110.99999 * 303.95401 * 18 17 14 47 47 H 1.08999 * 109.47193 * 300.00449 * 19 18 17 48 48 H 1.09001 * 109.46918 * 60.00066 * 19 18 17 49 49 H 0.97007 * 119.99880 * 359.97438 * 22 20 19 50 50 H 0.96995 * 120.00290 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 2.7943 -1.3227 -0.8081 6 8 1.1476 -2.4146 -0.1253 7 6 1.8689 -3.5620 0.3736 8 6 2.6341 -3.0411 1.6144 9 6 2.7619 -1.5222 1.3613 10 1 3.8109 -1.2317 1.3028 11 6 2.0598 -0.7453 2.4451 12 8 0.9353 -1.0524 2.7799 13 7 2.6816 0.2906 3.0423 14 6 1.9967 1.0496 4.0917 15 1 1.3698 0.3766 4.6765 16 6 1.1247 2.1318 3.4519 17 6 3.0335 1.7047 5.0064 18 7 3.9458 0.6777 5.5269 19 6 4.9577 1.2716 6.4108 20 6 5.8729 0.1901 6.9246 21 8 5.6995 -0.9619 6.5872 22 7 6.8840 0.5031 7.7590 23 6 7.7168 -0.4807 8.2259 24 1 7.5625 -1.5064 7.9255 25 6 8.7596 -0.1580 9.0858 26 7 9.5577 -1.1009 9.5338 27 14 9.0270 1.6165 9.6049 28 1 8.2520 1.8928 10.8410 29 1 10.4713 1.8438 9.8648 30 1 8.5704 2.5234 8.5212 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5399 -0.9354 -0.0004 33 1 3.0522 1.1539 0.4332 34 1 2.1666 1.6651 -1.0237 35 1 1.5166 2.0403 0.5903 36 1 1.1744 -4.3519 0.6598 37 1 2.5684 -3.9269 -0.3785 38 1 3.6199 -3.5018 1.6786 39 1 2.0631 -3.2301 2.5233 40 1 3.5808 0.5364 2.7744 41 1 0.6155 2.6968 4.2326 42 1 1.7517 2.8048 2.8670 43 1 0.3861 1.6650 2.8002 44 1 3.6020 2.4430 4.4410 45 1 2.5265 2.1952 5.8374 46 1 3.4357 -0.0529 6.0002 47 1 5.5396 2.0067 5.8548 48 1 4.4644 1.7594 7.2516 49 1 7.0228 1.4246 8.0285 50 1 10.2853 -0.8757 10.1343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715951906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:48 Heat of formation + Delta-G solvation = -121.994026 kcal Electronic energy + Delta-G solvation = -30390.914486 eV Core-core repulsion = 26224.547737 eV Total energy + Delta-G solvation = -4166.366749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67306 -40.30789 -39.58001 -37.64148 -36.05850 -35.96076 -35.04746 -33.73244 -33.46439 -31.73319 -29.56588 -29.04507 -28.03524 -26.62697 -25.18552 -24.36576 -23.36825 -21.86646 -21.23818 -21.22519 -20.24330 -19.61708 -18.28036 -17.99412 -17.42983 -17.07912 -16.88905 -16.67093 -16.39598 -16.19946 -15.81605 -15.64539 -15.20105 -15.04161 -14.83077 -14.67976 -14.56194 -14.27761 -14.12488 -14.02471 -13.94285 -13.39582 -13.14563 -13.09866 -12.99814 -12.87798 -12.77030 -12.64479 -12.56837 -12.40364 -12.24651 -12.15380 -11.97245 -11.80569 -11.78740 -11.50176 -10.86480 -10.61540 -10.42406 -10.23937 -9.98286 -9.79943 -9.32946 -8.40499 -6.01481 1.30105 1.30902 1.36678 1.45678 1.75719 1.98235 2.23977 2.30663 2.73486 2.86580 3.16361 3.40017 3.44337 3.74345 3.82632 3.90516 4.02797 4.15245 4.18247 4.23578 4.27035 4.31526 4.37996 4.42648 4.50049 4.58874 4.60716 4.67958 4.68805 4.79038 4.79624 4.85033 4.85660 4.89943 5.02031 5.09853 5.12215 5.14611 5.34056 5.53424 5.63512 5.67962 5.73411 5.90951 6.04936 6.10720 6.30779 6.60801 6.73673 6.89629 7.41472 7.44284 7.98750 8.77257 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.002367 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.493609 B =11827.433061 C =12820.978801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C -0.108 4.108 4 C 0.127 3.873 5 H 0.106 0.894 6 O -0.386 6.386 7 C 0.047 3.953 8 C -0.141 4.141 9 C -0.137 4.137 10 H 0.125 0.875 11 C 0.530 3.470 12 O -0.577 6.577 13 N -0.697 5.697 14 C 0.148 3.852 15 H 0.055 0.945 16 C -0.151 4.151 17 C 0.056 3.944 18 N -0.681 5.681 19 C 0.063 3.937 20 C 0.448 3.552 21 O -0.615 6.615 22 N -0.592 5.592 23 C -0.328 4.328 24 H 0.053 0.947 25 C -0.017 4.017 26 N -0.936 5.936 27 Si 0.966 3.034 28 H -0.259 1.259 29 H -0.277 1.277 30 H -0.227 1.227 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.338 0.662 47 H 0.121 0.879 48 H 0.076 0.924 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 12.309 -19.246 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.165 4.165 4 C 0.070 3.930 5 H 0.124 0.876 6 O -0.305 6.305 7 C -0.029 4.029 8 C -0.179 4.179 9 C -0.159 4.159 10 H 0.143 0.857 11 C 0.316 3.684 12 O -0.456 6.456 13 N -0.348 5.348 14 C 0.042 3.958 15 H 0.073 0.927 16 C -0.209 4.209 17 C -0.073 4.073 18 N -0.312 5.312 19 C -0.069 4.069 20 C 0.236 3.764 21 O -0.499 6.499 22 N -0.234 5.234 23 C -0.457 4.457 24 H 0.071 0.929 25 C -0.215 4.215 26 N -0.577 5.577 27 Si 0.786 3.214 28 H -0.184 1.184 29 H -0.202 1.202 30 H -0.150 1.150 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.247 0.753 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.120 0.880 45 H 0.078 0.922 46 H 0.156 0.844 47 H 0.139 0.861 48 H 0.094 0.906 49 H 0.226 0.774 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.936 11.293 -19.729 27.200 hybrid contribution 0.449 0.175 1.641 1.710 sum -14.487 11.468 -18.088 25.856 Atomic orbital electron populations 1.23587 0.95997 1.01374 0.99445 1.21716 0.95707 0.94878 1.02353 1.20818 1.00086 0.92536 1.03055 1.21823 0.90607 0.86073 0.94538 0.87615 1.89115 1.38671 1.17994 1.84741 1.23571 0.95952 0.89071 0.94291 1.22970 1.02523 0.92796 0.99627 1.22780 1.02136 0.96490 0.94490 0.85726 1.20338 0.85835 0.80014 0.82171 1.90666 1.20648 1.68969 1.65367 1.45832 1.19271 1.31626 1.38100 1.20886 0.93326 0.93099 0.88461 0.92718 1.22058 0.99504 0.97866 1.01490 1.22376 0.93283 0.93706 0.97943 1.60062 1.17198 1.12886 1.41086 1.21645 0.93966 0.94310 0.96993 1.21070 0.83368 0.90734 0.81267 1.90554 1.74186 1.23724 1.61452 1.42037 1.28148 1.09146 1.44020 1.18988 1.09418 0.90461 1.26841 0.92859 1.26146 0.94812 1.04434 0.96157 1.69808 1.18408 1.35818 1.33668 0.85347 0.78840 0.76970 0.80234 1.18363 1.20195 1.15049 0.87780 0.89862 0.90899 0.90112 0.91257 0.88868 0.89544 0.87941 0.92398 0.75322 0.90526 0.90336 0.93767 0.87976 0.92217 0.84402 0.86142 0.90645 0.77436 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 13.32 67.78 0.90 -2.79 16 2 C -0.15 -2.77 3.78 -16.49 -0.06 -2.83 16 3 C -0.11 -1.36 9.67 71.24 0.69 -0.67 16 4 C 0.13 2.43 3.53 30.35 0.11 2.54 16 5 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 6 O -0.39 -9.22 9.82 -148.98 -1.46 -10.68 16 7 C 0.05 0.89 7.64 72.60 0.55 1.45 16 8 C -0.14 -2.95 6.63 31.72 0.21 -2.74 16 9 C -0.14 -2.72 3.25 -10.52 -0.03 -2.75 16 10 H 0.12 1.83 8.00 -2.38 -0.02 1.81 16 11 C 0.53 13.04 4.77 87.66 0.42 13.46 16 12 O -0.58 -19.06 15.59 -3.03 -0.05 -19.11 16 13 N -0.70 -13.73 4.80 -442.54 -2.12 -15.86 16 14 C 0.15 2.79 2.82 44.99 0.13 2.91 16 15 H 0.05 1.38 7.57 -2.39 -0.02 1.37 16 16 C -0.15 -2.21 9.44 71.98 0.68 -1.53 16 17 C 0.06 0.91 5.24 86.30 0.45 1.37 16 18 N -0.68 -17.36 5.85 -517.93 -3.03 -20.39 16 19 C 0.06 1.69 6.17 85.56 0.53 2.22 16 20 C 0.45 19.17 7.82 87.66 0.69 19.86 16 21 O -0.61 -33.07 15.78 -3.05 -0.05 -33.12 16 22 N -0.59 -26.82 5.09 -306.99 -1.56 -28.39 16 23 C -0.33 -18.87 10.16 84.04 0.85 -18.02 16 24 H 0.05 3.69 7.39 -2.91 -0.02 3.66 16 25 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 26 N -0.94 -56.01 13.96 21.66 0.30 -55.71 16 27 Si 0.97 37.72 27.74 68.60 1.90 39.62 16 28 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 29 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 30 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 31 H 0.10 1.96 8.05 -2.91 -0.02 1.93 16 32 H 0.08 2.24 6.90 -2.91 -0.02 2.22 16 33 H 0.07 0.76 7.94 -2.39 -0.02 0.74 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.86 8.05 -2.39 -0.02 0.84 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 39 H 0.06 1.55 7.38 -2.39 -0.02 1.53 16 40 H 0.41 6.75 8.50 -92.71 -0.79 5.96 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.83 8.14 -2.38 -0.02 0.82 16 43 H 0.04 0.85 8.14 -2.39 -0.02 0.84 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.34 10.36 8.43 -89.70 -0.76 9.61 16 47 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.39 14.40 5.76 -92.70 -0.53 13.87 16 50 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -83.07 409.06 -0.67 -83.74 By element: Atomic # 1 Polarization: 49.07 SS G_CDS: -1.18 Total: 47.89 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.58 Total: 12.00 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -6.41 Total: -120.34 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -1.56 Total: -62.91 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 1.90 Total: 39.62 kcal Total: -83.07 -0.67 -83.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715951906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.254 kcal (2) G-P(sol) polarization free energy of solvation -83.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds