Wall clock time and date at job start Tue Mar 31 2020 23:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99786 * 2 1 4 4 O 1.42896 * 109.47101 * 135.00514 * 3 2 1 5 5 C 1.42896 * 114.00267 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47404 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99953 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00197 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.64517 * 359.96014 * 8 6 5 10 10 C 1.54369 * 107.28351 * 181.12846 * 9 8 6 11 11 C 1.55153 * 102.92336 * 22.13751 * 10 9 8 12 12 H 1.08997 * 111.00838 * 82.64176 * 11 10 9 13 13 C 1.53004 * 111.00214 * 206.45313 * 11 10 9 14 14 H 1.08996 * 109.47012 * 54.49403 * 13 11 10 15 15 C 1.53004 * 109.47168 * 174.49091 * 13 11 10 16 16 N 1.46898 * 109.47269 * 294.48856 * 13 11 10 17 17 C 1.46899 * 110.99871 * 155.00124 * 16 13 11 18 18 C 1.50703 * 109.47062 * 180.02562 * 17 16 13 19 19 O 1.21298 * 119.99626 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00292 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00305 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99876 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00010 * 180.02562 * 21 20 18 24 24 N 1.31403 * 120.00082 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47314 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47240 * 120.00483 * 25 23 21 28 28 H 1.48500 * 109.47186 * 240.00222 * 25 23 21 29 29 C 1.47420 * 125.64868 * 179.97438 * 8 6 5 30 30 H 1.07993 * 120.00164 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99924 * 359.97438 * 1 2 3 32 32 H 1.07998 * 120.00158 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47283 * 15.00013 * 3 2 1 34 34 H 1.09002 * 109.46448 * 254.99841 * 3 2 1 35 35 H 1.08995 * 109.47046 * 59.99727 * 5 4 3 36 36 H 1.08999 * 109.47195 * 299.99543 * 5 4 3 37 37 H 1.09002 * 109.88176 * 300.51075 * 9 8 6 38 38 H 1.08995 * 109.88167 * 61.52431 * 9 8 6 39 39 H 1.08999 * 110.70249 * 263.78880 * 10 9 8 40 40 H 1.08997 * 110.75440 * 140.50887 * 10 9 8 41 41 H 1.08993 * 109.47193 * 174.67577 * 15 13 11 42 42 H 1.09002 * 109.46725 * 294.67646 * 15 13 11 43 43 H 1.09002 * 109.46771 * 54.66775 * 15 13 11 44 44 H 1.00899 * 111.00124 * 31.04645 * 16 13 11 45 45 H 1.09002 * 109.47299 * 300.00114 * 17 16 13 46 46 H 1.08995 * 109.47335 * 60.00579 * 17 16 13 47 47 H 0.97000 * 119.99596 * 0.02562 * 20 18 17 48 48 H 0.97004 * 120.00350 * 179.97438 * 24 23 21 49 49 H 1.09003 * 110.36861 * 37.00090 * 29 8 6 50 50 H 1.09001 * 110.46053 * 274.71970 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9084 2.4349 1.0320 6 6 4.9940 2.2569 2.0619 7 8 5.0887 1.2110 2.6686 8 7 5.8598 3.2599 2.3089 9 6 5.8599 4.5736 1.6488 10 6 7.0425 5.3784 2.2291 11 6 7.9822 4.2704 2.7736 12 1 8.6020 3.8577 1.9776 13 6 8.8471 4.7992 3.9197 14 1 8.2067 5.2317 4.6883 15 6 9.6580 3.6487 4.5195 16 7 9.7619 5.8285 3.4081 17 6 10.1646 6.7528 4.4765 18 6 11.1001 7.7924 3.9151 19 8 11.4013 7.7662 2.7404 20 7 11.6013 8.7519 4.7180 21 6 12.4527 9.6974 4.2075 22 1 12.7215 9.6736 3.1617 23 6 12.9698 10.6862 5.0354 24 7 12.6431 10.7149 6.3078 25 14 14.1293 11.9749 4.3395 26 1 14.3363 11.7238 2.8905 27 1 13.5400 13.3248 4.5283 28 1 15.4333 11.9008 5.0463 29 6 6.9635 3.2213 3.2854 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3855 2.1161 0.2660 34 1 2.4755 1.4867 -0.9927 35 1 3.2690 3.2695 1.3191 36 1 4.3588 2.6396 0.0607 37 1 5.9897 4.4483 0.5738 38 1 4.9217 5.0902 1.8511 39 1 6.7063 6.0298 3.0358 40 1 7.5379 5.9547 1.4478 41 1 10.3429 4.0404 5.2714 42 1 8.9817 2.9305 4.9829 43 1 10.2270 3.1557 3.7312 44 1 9.3485 6.3277 2.6349 45 1 9.2809 7.2426 4.8855 46 1 10.6703 6.1972 5.2662 47 1 11.3601 8.7731 5.6573 48 1 13.0044 11.4050 6.8860 49 1 7.4174 2.2305 3.3060 50 1 6.6041 3.4939 4.2777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716956682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:01 Heat of formation + Delta-G solvation = -91.822496 kcal Electronic energy + Delta-G solvation = -28583.981189 eV Core-core repulsion = 24418.922776 eV Total energy + Delta-G solvation = -4165.058413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53798 -38.96096 -38.26557 -37.66158 -35.87184 -34.30802 -33.93213 -32.18915 -31.21703 -30.59061 -29.36774 -27.79449 -26.65218 -25.95475 -24.43241 -23.35962 -22.04193 -20.61164 -20.21817 -19.62603 -19.22491 -17.92543 -17.78105 -17.21517 -16.85078 -16.57804 -16.06125 -15.68268 -15.35599 -15.10079 -14.87763 -14.55915 -14.40252 -14.02132 -13.79118 -13.65962 -13.53527 -13.23831 -13.13016 -12.93472 -12.67529 -12.50274 -12.48782 -12.35598 -11.95838 -11.85040 -11.57742 -11.47090 -11.32902 -11.12671 -11.08213 -10.93224 -10.64422 -10.47544 -10.35798 -10.23968 -10.09421 -9.81805 -9.53591 -8.99686 -8.46743 -8.09560 -7.97557 -6.43409 -3.84227 1.62743 2.27779 2.36013 3.14958 3.25764 3.32795 3.46611 3.88182 3.93981 4.10638 4.18975 4.25823 4.40751 4.50175 4.57815 4.62650 4.65369 4.72591 4.84301 4.87238 4.99785 5.00299 5.02850 5.17279 5.23038 5.27946 5.32190 5.37242 5.43972 5.52953 5.55353 5.70166 5.78277 5.79770 5.85212 5.96115 6.01232 6.06092 6.08123 6.13299 6.23970 6.37471 6.57040 7.12525 7.21635 7.53790 7.64914 7.83609 8.04978 8.59552 9.16406 9.52818 10.04066 10.74366 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032284 B = 0.001521 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.085574 B =18399.080568 C =18879.663832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.087 3.913 4 O -0.360 6.360 5 C 0.049 3.951 6 C 0.530 3.470 7 O -0.519 6.519 8 N -0.619 5.619 9 C 0.099 3.901 10 C -0.135 4.135 11 C -0.101 4.101 12 H 0.097 0.903 13 C 0.096 3.904 14 H 0.045 0.955 15 C -0.143 4.143 16 N -0.663 5.663 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.117 3.883 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.082 0.918 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.732 -15.052 -8.687 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.279 6.279 5 C -0.030 4.030 6 C 0.317 3.683 7 O -0.393 6.393 8 N -0.356 5.356 9 C -0.024 4.024 10 C -0.172 4.172 11 C -0.120 4.120 12 H 0.115 0.885 13 C -0.015 4.015 14 H 0.063 0.937 15 C -0.201 4.201 16 N -0.296 5.296 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.006 4.006 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.897 -16.127 -8.853 27.841 hybrid contribution -0.414 1.619 0.303 1.698 sum -21.311 -14.509 -8.549 27.162 Atomic orbital electron populations 1.23854 0.95486 1.02398 0.99831 1.22710 0.95621 0.98147 1.00389 1.21632 0.88663 0.96334 0.92327 1.88037 1.44357 1.34910 1.60575 1.22159 0.93041 0.89241 0.98606 1.19840 0.81920 0.82820 0.83732 1.90751 1.72000 1.26425 1.50149 1.48427 1.31534 1.14461 1.41164 1.22124 0.99677 0.83157 0.97458 1.22786 0.95031 0.97569 1.01863 1.22574 0.95326 0.95201 0.98930 0.88470 1.21449 0.92085 0.93537 0.94389 0.93702 1.21849 0.99997 0.97152 1.01124 1.60129 1.43792 1.16058 1.09634 1.21720 0.98094 0.93839 0.94529 1.19816 0.85908 0.84234 0.87433 1.90522 1.63595 1.75951 1.16712 1.41872 1.41797 1.25113 1.11252 1.19754 1.21497 1.04835 0.96802 0.87867 1.25254 0.98629 0.98826 0.95193 1.69616 1.45053 1.35283 1.04331 0.85810 0.79506 0.79857 0.79232 1.19208 1.20793 1.20734 1.22267 0.86028 1.00451 0.91841 0.87634 0.88379 0.86356 0.92485 0.91977 0.90200 0.90098 0.91014 0.91134 0.90233 0.88998 0.92220 0.92746 0.91870 0.83082 0.93942 0.89570 0.77478 0.91922 0.89912 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 14.31 29.01 0.42 -0.54 16 2 C -0.15 -1.03 9.89 -36.02 -0.36 -1.39 16 3 C 0.09 0.59 6.35 36.01 0.23 0.81 16 4 O -0.36 -3.73 9.86 -55.14 -0.54 -4.27 16 5 C 0.05 0.39 5.61 36.01 0.20 0.60 16 6 C 0.53 6.02 7.93 -10.98 -0.09 5.93 16 7 O -0.52 -8.26 16.75 -14.35 -0.24 -8.50 16 8 N -0.62 -5.83 3.33 -170.48 -0.57 -6.39 16 9 C 0.10 0.65 6.49 -3.04 -0.02 0.63 16 10 C -0.13 -1.04 5.60 -24.87 -0.14 -1.18 16 11 C -0.10 -0.94 2.68 -88.46 -0.24 -1.18 16 12 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 13 C 0.10 1.07 2.16 -67.71 -0.15 0.92 16 14 H 0.05 0.48 7.78 -51.93 -0.40 0.08 16 15 C -0.14 -1.58 9.15 37.16 0.34 -1.24 16 16 N -0.66 -9.87 5.93 -107.99 -0.64 -10.51 16 17 C 0.05 0.86 5.96 -4.97 -0.03 0.83 16 18 C 0.44 10.12 7.82 -10.98 -0.09 10.04 16 19 O -0.58 -15.46 15.78 5.54 0.09 -15.37 16 20 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 25 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 C 0.12 1.13 5.44 -2.52 -0.01 1.11 16 30 H 0.11 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.10 0.42 7.90 -52.49 -0.41 0.00 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.06 0.30 7.86 -51.93 -0.41 -0.11 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.62 8.02 -51.93 -0.42 0.20 16 40 H 0.09 0.70 7.79 -51.93 -0.40 0.30 16 41 H 0.06 0.71 7.35 -51.93 -0.38 0.33 16 42 H 0.05 0.51 7.56 -51.93 -0.39 0.12 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.35 5.24 6.95 -39.29 -0.27 4.97 16 45 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 46 H 0.09 1.37 7.36 -51.93 -0.38 0.99 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 50 H 0.07 0.67 8.03 -51.93 -0.42 0.26 16 LS Contribution 414.60 15.07 6.25 6.25 Total: -1.00 -34.68 414.60 -8.55 -43.23 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -8.37 Total: 9.93 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.17 Total: 7.46 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.54 Total: -54.52 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.70 Total: -28.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.68 -8.55 -43.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716956682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.589 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds