Wall clock time and date at job start Tue Mar 31 2020 22:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47006 * 2 1 4 4 N 1.46503 * 109.47062 * 239.99887 * 2 1 3 5 5 C 1.34773 * 120.00234 * 84.72736 * 4 2 1 6 6 O 1.21282 * 119.99842 * 0.27087 * 5 4 2 7 7 C 1.50693 * 120.00356 * 180.27211 * 5 4 2 8 8 C 1.53173 * 109.54647 * 299.55800 * 7 5 4 9 9 C 1.53095 * 109.16739 * 183.14898 * 8 7 5 10 10 O 1.42904 * 109.41070 * 57.60650 * 9 8 7 11 11 C 1.42905 * 114.10041 * 298.84241 * 10 9 8 12 12 C 1.53093 * 109.41233 * 61.15934 * 11 10 9 13 13 C 1.53001 * 109.47264 * 119.99982 * 2 1 3 14 14 C 1.53940 * 113.72954 * 281.86703 * 13 2 1 15 15 N 1.48191 * 86.09965 * 221.95160 * 14 13 2 16 16 C 1.46896 * 111.06736 * 137.51988 * 15 14 13 17 17 C 1.50701 * 109.47302 * 90.56915 * 16 15 14 18 18 O 1.21297 * 119.99722 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00298 * 179.97438 * 17 16 15 20 20 C 1.37088 * 120.00041 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00219 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00396 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99447 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00401 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47245 * 60.00215 * 24 22 20 26 26 H 1.48502 * 109.47325 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47202 * 300.00069 * 24 22 20 28 28 C 1.47966 * 90.79735 * 24.60354 * 15 14 13 29 29 H 1.09005 * 109.47106 * 60.01986 * 1 2 3 30 30 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46779 * 300.02526 * 1 2 3 32 32 H 0.97001 * 119.99344 * 264.99751 * 4 2 1 33 33 H 1.09008 * 109.53942 * 59.82008 * 7 5 4 34 34 H 1.09004 * 109.51903 * 303.05736 * 8 7 5 35 35 H 1.09006 * 109.52387 * 63.24284 * 8 7 5 36 36 H 1.08993 * 109.47937 * 297.62634 * 9 8 7 37 37 H 1.09002 * 109.48050 * 177.59076 * 9 8 7 38 38 H 1.09005 * 109.47562 * 301.18260 * 11 10 9 39 39 H 1.08995 * 109.48312 * 181.14675 * 11 10 9 40 40 H 1.09006 * 109.52146 * 182.48902 * 12 11 10 41 41 H 1.08995 * 109.52238 * 62.30058 * 12 11 10 42 42 H 1.08999 * 112.93891 * 53.42411 * 13 2 1 43 43 H 1.08992 * 113.76193 * 336.23798 * 14 13 2 44 44 H 1.09001 * 113.75780 * 107.60243 * 14 13 2 45 45 H 1.09002 * 109.47326 * 210.56798 * 16 15 14 46 46 H 1.09000 * 109.47354 * 330.56624 * 16 15 14 47 47 H 0.96999 * 119.99576 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99726 * 179.97438 * 23 22 20 49 49 H 1.08998 * 113.75546 * 221.08832 * 28 15 14 50 50 H 1.08993 * 113.76314 * 89.71576 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1418 -0.0197 -2.3585 6 8 1.8534 1.1570 -2.4130 7 6 2.6383 -0.7316 -3.5904 8 6 4.0480 -1.2739 -3.3358 9 6 4.5747 -1.9262 -4.6168 10 8 4.5631 -0.9680 -5.6770 11 6 3.2645 -0.4612 -5.9914 12 6 2.6853 0.2498 -4.7655 13 6 2.0400 -0.7212 1.2492 14 6 1.9733 0.1328 2.5283 15 7 3.3110 -0.4202 2.8460 16 6 4.2040 0.6236 3.3663 17 6 4.0865 0.6829 4.8675 18 8 3.3333 -0.0708 5.4471 19 7 4.8191 1.5725 5.5663 20 6 4.7119 1.6267 6.9319 21 1 4.0406 0.9562 7.4479 22 6 5.4668 2.5443 7.6523 23 7 6.2832 3.3605 7.0244 24 14 5.3211 2.6176 9.5131 25 1 5.7044 1.3049 10.0917 26 1 6.2234 3.6733 10.0391 27 1 3.9193 2.9335 9.8879 28 6 3.5701 -0.6730 1.4113 29 1 -0.3633 0.5135 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 2.2490 -1.6318 -1.1525 33 1 1.9669 -1.5561 -3.8305 34 1 4.7066 -0.4549 -3.0467 35 1 4.0145 -2.0149 -2.5370 36 1 3.9386 -2.7703 -4.8828 37 1 5.5941 -2.2760 -4.4540 38 1 2.6112 -1.2864 -6.2753 39 1 3.3400 0.2441 -6.8189 40 1 1.6770 0.5986 -4.9893 41 1 3.3163 1.0996 -4.5054 42 1 1.6177 -1.7193 1.3657 43 1 1.9753 1.2063 2.3401 44 1 1.1925 -0.1770 3.2229 45 1 5.2329 0.3918 3.0912 46 1 3.9227 1.5873 2.9415 47 1 5.4217 2.1750 5.1028 48 1 6.8099 4.0013 7.5273 49 1 4.0626 -1.6253 1.2152 50 1 4.0401 0.1644 0.8957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717543296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:34 Heat of formation + Delta-G solvation = -122.467340 kcal Electronic energy + Delta-G solvation = -29587.915483 eV Core-core repulsion = 25421.528210 eV Total energy + Delta-G solvation = -4166.387273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70271 -40.98174 -39.77096 -39.33263 -36.42012 -35.89798 -34.78969 -33.32243 -32.49359 -31.88548 -30.62486 -27.49828 -27.23249 -26.71430 -25.58871 -24.46371 -23.15530 -21.87640 -21.17358 -20.99930 -20.44713 -19.90308 -18.35574 -17.85713 -17.46818 -16.98912 -16.88071 -16.75885 -16.56029 -16.30270 -15.97915 -15.75209 -15.60920 -15.42831 -15.00674 -14.87524 -14.63514 -14.14974 -14.07231 -14.03173 -13.71392 -13.51669 -13.42996 -13.27107 -12.98848 -12.87462 -12.52596 -12.45431 -12.42445 -12.28887 -12.15010 -11.93938 -11.86305 -11.65389 -11.61662 -11.50240 -11.42260 -10.90834 -10.41623 -10.39205 -10.12479 -10.02786 -9.63280 -8.47676 -5.96805 1.38631 1.39981 1.51392 1.63043 2.04051 2.11248 2.27488 2.75832 3.01678 3.18091 3.32786 3.40653 3.58472 3.64717 3.75485 3.81525 4.03782 4.08737 4.15628 4.19101 4.27325 4.31414 4.34873 4.38417 4.46892 4.49045 4.51695 4.54741 4.64698 4.70958 4.74951 4.77822 4.81933 4.82323 4.85478 4.98215 5.11302 5.13191 5.18475 5.28438 5.31754 5.38377 5.41425 5.52663 5.88318 6.06885 6.30584 6.58240 6.59176 7.11458 7.28162 7.54867 8.11118 8.69619 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.001901 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.861633 B =14725.834627 C =15323.761852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.063 0.937 4 N -0.707 5.707 5 C 0.517 3.483 6 O -0.585 6.585 7 C -0.103 4.103 8 C -0.143 4.143 9 C 0.058 3.942 10 O -0.408 6.408 11 C 0.062 3.938 12 C -0.135 4.135 13 C -0.097 4.097 14 C 0.013 3.987 15 N -0.480 5.480 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.013 3.987 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.416 0.584 33 H 0.127 0.873 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.108 0.892 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 -11.570 -27.301 30.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.081 0.919 4 N -0.359 5.359 5 C 0.304 3.696 6 O -0.465 6.465 7 C -0.124 4.124 8 C -0.181 4.181 9 C -0.018 4.018 10 O -0.327 6.327 11 C -0.014 4.014 12 C -0.174 4.174 13 C -0.116 4.116 14 C -0.117 4.117 15 N -0.203 5.203 16 C -0.108 4.108 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.115 4.115 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.091 0.909 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.003 -11.553 -26.472 29.720 hybrid contribution 0.212 1.254 0.756 1.480 sum -6.790 -10.298 -25.716 28.522 Atomic orbital electron populations 1.22087 0.94366 1.03129 1.01927 1.20822 0.94627 0.96006 0.83357 0.91864 1.45897 1.66655 1.14792 1.08523 1.21060 0.76333 0.86777 0.85406 1.90706 1.51858 1.18213 1.85746 1.21409 0.99303 0.99669 0.91992 1.22207 0.93827 1.01741 1.00351 1.22760 1.03309 0.90616 0.85155 1.87936 1.29923 1.60518 1.54373 1.22690 0.84198 0.98344 0.96161 1.21986 1.02315 0.98083 0.94996 1.23128 0.95633 1.00838 0.91996 1.23991 0.93273 0.98020 0.96377 1.68382 1.02396 1.33083 1.16443 1.22339 1.00437 0.96241 0.91821 1.20786 0.83277 0.82642 0.90366 1.90477 1.42499 1.44882 1.72422 1.41967 1.39098 1.33409 1.06969 1.19625 1.24479 1.19172 0.83069 0.90351 1.26075 0.95282 0.95057 1.05056 1.69673 1.26476 1.21722 1.38395 0.84970 0.78387 0.78235 0.76631 1.19620 1.19434 1.19694 1.24047 0.96559 1.03197 0.87703 0.93514 0.90537 0.91527 0.74636 0.85529 0.92428 0.87601 0.90777 0.87644 0.90983 0.88152 0.90489 0.92934 0.85953 0.91407 0.90431 0.87650 0.90901 0.77143 0.91300 0.87350 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.44 71.98 0.68 -1.92 16 2 C 0.16 2.73 2.29 44.99 0.10 2.83 16 3 H 0.06 1.47 7.49 -2.39 -0.02 1.45 16 4 N -0.71 -9.15 4.85 -442.53 -2.15 -11.30 16 5 C 0.52 9.04 7.12 87.66 0.62 9.66 16 6 O -0.59 -16.13 15.63 -3.04 -0.05 -16.18 16 7 C -0.10 -1.13 2.61 -11.43 -0.03 -1.16 16 8 C -0.14 -1.27 5.30 30.68 0.16 -1.11 16 9 C 0.06 0.49 6.84 72.01 0.49 0.98 16 10 O -0.41 -5.99 10.77 -148.98 -1.60 -7.59 16 11 C 0.06 0.68 6.84 72.01 0.49 1.18 16 12 C -0.14 -1.92 4.73 30.68 0.15 -1.77 16 13 C -0.10 -1.75 3.35 -10.15 -0.03 -1.78 16 14 C 0.01 0.35 7.42 86.37 0.64 0.99 16 15 N -0.48 -15.08 5.65 -911.69 -5.15 -20.23 16 16 C 0.02 0.83 5.28 85.56 0.45 1.28 16 17 C 0.44 21.78 7.83 87.66 0.69 22.47 16 18 O -0.62 -35.31 16.01 -3.08 -0.05 -35.36 16 19 N -0.58 -30.53 5.29 -306.98 -1.62 -32.15 16 20 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 24 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 C 0.01 0.27 7.39 86.41 0.64 0.91 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 32 H 0.42 2.68 8.12 -92.71 -0.75 1.93 16 33 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.11 0.39 7.70 -2.38 -0.02 0.37 16 36 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.05 1.04 8.02 -2.39 -0.02 1.02 16 42 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 1.85 7.38 -2.39 -0.02 1.84 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.11 3.33 8.08 -2.39 -0.02 3.31 16 46 H 0.07 2.35 7.39 -2.39 -0.02 2.33 16 47 H 0.39 19.89 7.90 -92.71 -0.73 19.16 16 48 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 49 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.07 1.45 7.88 -2.39 -0.02 1.43 16 Total: -1.00 -78.83 404.94 -2.51 -81.35 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.54 Total: 32.63 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 6.33 Total: 13.60 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -8.64 Total: -114.12 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -1.70 Total: -59.13 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -78.83 -2.51 -81.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717543296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.122 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds