Wall clock time and date at job start Tue Mar 31 2020 22:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46469 * 2 1 4 4 N 1.46501 * 109.46989 * 120.00220 * 2 1 3 5 5 C 1.34774 * 119.99411 * 274.99914 * 4 2 1 6 6 O 1.21277 * 120.00513 * 0.02562 * 5 4 2 7 7 C 1.50709 * 119.99599 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47043 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46968 * 180.02562 * 8 7 5 10 10 H 1.09006 * 109.99013 * 54.63307 * 9 8 7 11 11 C 1.54099 * 109.87955 * 175.71951 * 9 8 7 12 12 C 1.54809 * 104.18948 * 121.45692 * 11 9 8 13 13 C 1.54994 * 102.09132 * 20.87839 * 12 11 9 14 14 H 1.08996 * 110.61935 * 81.48323 * 13 12 11 15 15 C 1.50697 * 110.61685 * 204.47839 * 13 12 11 16 16 N 1.34783 * 120.00025 * 290.52536 * 15 13 12 17 17 O 1.21283 * 120.00292 * 110.52844 * 15 13 12 18 18 O 1.43749 * 109.88102 * 293.55021 * 9 8 7 19 19 C 1.52997 * 109.46952 * 240.00155 * 2 1 3 20 20 C 1.53943 * 113.73950 * 158.74069 * 19 2 1 21 21 N 1.47814 * 86.03723 * 222.08524 * 20 19 2 22 22 C 1.36946 * 134.45745 * 204.64829 * 21 20 19 23 23 H 1.07999 * 120.00041 * 173.34347 * 22 21 20 24 24 C 1.38808 * 119.99661 * 353.34297 * 22 21 20 25 25 N 1.31620 * 120.00505 * 5.06449 * 24 22 21 26 26 Si 1.86802 * 119.99884 * 185.06361 * 24 22 21 27 27 H 1.48506 * 109.47045 * 94.98483 * 26 24 22 28 28 H 1.48501 * 109.47459 * 214.98608 * 26 24 22 29 29 H 1.48497 * 109.47034 * 334.98768 * 26 24 22 30 30 C 1.47575 * 91.05287 * 24.54796 * 21 20 19 31 31 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47716 * 299.99688 * 1 2 3 33 33 H 1.09000 * 109.47568 * 60.00070 * 1 2 3 34 34 H 0.96996 * 119.99933 * 95.00071 * 4 2 1 35 35 H 1.09006 * 109.46418 * 60.00157 * 7 5 4 36 36 H 1.08998 * 109.46990 * 300.00378 * 7 5 4 37 37 H 1.09006 * 109.46691 * 60.00650 * 8 7 5 38 38 H 1.08997 * 109.47291 * 300.00439 * 8 7 5 39 39 H 1.08995 * 110.48546 * 240.13536 * 11 9 8 40 40 H 1.08998 * 110.48397 * 2.77696 * 11 9 8 41 41 H 1.08994 * 110.90719 * 139.08094 * 12 11 9 42 42 H 1.09008 * 110.90524 * 262.64642 * 12 11 9 43 43 H 0.96996 * 119.99550 * 0.02562 * 16 15 13 44 44 H 0.97003 * 120.00170 * 179.97438 * 16 15 13 45 45 H 1.08996 * 112.94897 * 290.33332 * 19 2 1 46 46 H 1.08994 * 113.77007 * 336.34330 * 20 19 2 47 47 H 1.09002 * 113.77182 * 107.74464 * 20 19 2 48 48 H 0.96997 * 119.99997 * 180.02562 * 25 24 22 49 49 H 1.09003 * 113.76989 * 221.15645 * 30 21 20 50 50 H 1.09001 * 113.87093 * 89.76616 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6499 -0.7286 3.5875 8 6 2.7018 0.2547 4.7586 9 6 3.2129 -0.4663 6.0075 10 1 4.1705 -0.9428 5.7970 11 6 3.3709 0.5387 7.1649 12 6 2.4524 -0.0186 8.2795 13 6 2.3098 -1.5064 7.8690 14 1 3.1746 -2.0808 8.2009 15 6 1.0373 -2.0909 8.4258 16 7 0.9127 -2.2932 9.7525 17 8 0.1253 -2.3794 7.6802 18 8 2.2570 -1.4544 6.4271 19 6 2.0400 -0.7212 -1.2492 20 6 3.4847 -0.3520 -1.6317 21 7 2.9978 -0.3175 -3.0269 22 6 3.5874 -0.4755 -4.2527 23 1 2.9789 -0.5088 -5.1444 24 6 4.9672 -0.5929 -4.3492 25 7 5.7005 -0.6526 -3.2579 26 14 5.7832 -0.6662 -6.0279 27 1 6.2264 0.6951 -6.4227 28 1 6.9588 -1.5715 -5.9679 29 1 4.8131 -1.1803 -7.0278 30 6 1.6213 -0.0471 -2.5685 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.6493 -1.1203 3.3978 36 1 1.9777 -1.5509 3.8325 37 1 1.7026 0.6468 4.9483 38 1 3.3742 1.0767 4.5132 39 1 4.4063 0.5703 7.5040 40 1 3.0389 1.5302 6.8571 41 1 2.9274 0.0716 9.2563 42 1 1.4841 0.4820 8.2721 43 1 1.6420 -2.0622 10.3489 44 1 0.0935 -2.6691 10.1110 45 1 1.8528 -1.7947 -1.2264 46 1 3.8046 0.6191 -1.2540 47 1 4.2071 -1.1447 -1.4366 48 1 6.6647 -0.7342 -3.3254 49 1 0.8586 -0.5969 -3.1200 50 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717553496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:48 Heat of formation + Delta-G solvation = -80.718512 kcal Electronic energy + Delta-G solvation = -29276.179542 eV Core-core repulsion = 25111.602633 eV Total energy + Delta-G solvation = -4164.576908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68676 -39.68569 -38.77853 -37.96878 -34.73980 -34.26374 -33.62980 -32.44224 -32.14410 -30.54711 -28.98167 -27.46445 -25.51956 -24.66237 -23.87102 -22.86087 -21.40582 -20.98753 -20.95748 -20.10454 -18.90551 -18.12829 -17.45287 -16.99064 -16.72152 -16.42198 -16.11068 -15.90810 -15.09501 -14.97171 -14.91234 -14.81923 -14.06035 -13.91061 -13.81413 -13.50021 -13.38190 -13.29749 -12.76089 -12.43533 -12.35548 -12.23796 -12.04720 -11.96445 -11.59638 -11.41237 -11.27091 -11.24781 -11.15898 -10.93858 -10.86875 -10.69132 -10.36764 -10.28312 -10.17854 -9.96642 -9.91561 -9.70878 -9.52755 -9.31589 -8.75780 -8.66722 -6.82212 -5.75043 -3.05885 2.15258 2.68364 2.93597 3.40976 3.44549 3.46615 3.48039 3.61966 4.00652 4.24154 4.39095 4.48451 4.49615 4.63020 4.75894 4.83333 5.02968 5.10393 5.17546 5.21124 5.31303 5.33747 5.38935 5.40309 5.44932 5.58669 5.66706 5.67032 5.75292 5.89015 5.94552 6.02470 6.11561 6.15195 6.25914 6.33112 6.44272 6.47818 6.49116 6.66377 6.75367 6.83121 6.91702 7.27533 7.40684 7.60279 7.80501 7.82865 8.01162 8.52864 9.07801 9.73970 10.64957 11.42786 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.001832 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.291875 B =15283.687601 C =15819.665868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.086 0.914 4 N -0.719 5.719 5 C 0.513 3.487 6 O -0.550 6.550 7 C -0.141 4.141 8 C -0.099 4.099 9 C 0.073 3.927 10 H 0.076 0.924 11 C -0.151 4.151 12 C -0.143 4.143 13 C 0.057 3.943 14 H 0.096 0.904 15 C 0.521 3.479 16 N -0.854 5.854 17 O -0.518 6.518 18 O -0.341 6.341 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.613 5.613 22 C -0.223 4.223 23 H 0.080 0.920 24 C -0.008 4.008 25 N -0.920 5.920 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 C 0.129 3.871 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.399 0.601 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.401 0.599 44 H 0.405 0.595 45 H 0.087 0.913 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.253 0.747 49 H 0.043 0.957 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 -1.967 30.017 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.369 5.369 5 C 0.300 3.700 6 O -0.428 6.428 7 C -0.181 4.181 8 C -0.137 4.137 9 C 0.015 3.985 10 H 0.094 0.906 11 C -0.188 4.188 12 C -0.181 4.181 13 C -0.005 4.005 14 H 0.114 0.886 15 C 0.305 3.695 16 N -0.420 5.420 17 O -0.391 6.391 18 O -0.259 6.259 19 C -0.167 4.167 20 C 0.049 3.951 21 N -0.339 5.339 22 C -0.350 4.350 23 H 0.098 0.902 24 C -0.205 4.205 25 N -0.567 5.567 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 C 0.003 3.997 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.229 0.771 44 H 0.237 0.763 45 H 0.105 0.895 46 H 0.045 0.955 47 H 0.085 0.915 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.116 -1.421 28.984 29.656 hybrid contribution 0.895 -0.370 -0.335 1.024 sum -5.221 -1.791 28.649 29.176 Atomic orbital electron populations 1.22127 0.95853 1.01686 1.01963 1.21052 0.93375 0.97510 0.83528 0.89627 1.46119 1.66952 1.14098 1.09769 1.20643 0.77407 0.87318 0.84673 1.90668 1.50691 1.16195 1.85244 1.21650 1.03410 1.00060 0.92947 1.21519 1.03530 0.97272 0.91385 1.22953 0.92363 0.88455 0.94724 0.90593 1.23012 1.00519 1.00657 0.94648 1.23097 1.01663 0.93580 0.99754 1.22945 0.95769 0.97179 0.84576 0.88625 1.20267 0.88885 0.77855 0.82529 1.43746 1.22048 1.68531 1.07689 1.90810 1.41006 1.49265 1.58033 1.89052 1.61027 1.58990 1.16864 1.23820 1.00851 0.99624 0.92400 1.22221 0.91256 0.98367 0.83251 1.45992 1.03553 1.82421 1.01975 1.19041 0.89852 1.42694 0.83442 0.90246 1.24819 0.95927 1.02514 0.97225 1.69838 1.04792 1.56099 1.25955 0.86138 0.79094 0.77418 0.83383 1.21659 1.21744 1.20556 1.22499 0.89668 0.96606 0.90954 0.92794 0.92825 0.91583 0.76667 0.88938 0.88311 0.90325 0.89678 0.90021 0.89452 0.89446 0.89875 0.77073 0.76335 0.89471 0.95495 0.91513 0.93699 0.93844 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.31 37.16 0.35 -1.94 16 2 C 0.15 2.45 2.38 -67.93 -0.16 2.29 16 3 H 0.09 1.61 7.42 -51.93 -0.39 1.23 16 4 N -0.72 -10.33 5.08 -53.81 -0.27 -10.61 16 5 C 0.51 7.62 7.79 -10.98 -0.09 7.54 16 6 O -0.55 -10.09 15.64 5.56 0.09 -10.01 16 7 C -0.14 -1.58 5.61 -27.88 -0.16 -1.73 16 8 C -0.10 -1.04 3.99 -26.73 -0.11 -1.15 16 9 C 0.07 0.60 3.41 -26.16 -0.09 0.51 16 10 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 11 C -0.15 -0.87 6.64 -25.20 -0.17 -1.04 16 12 C -0.14 -0.71 6.57 -24.72 -0.16 -0.88 16 13 C 0.06 0.40 3.76 -26.83 -0.10 0.30 16 14 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 15 C 0.52 4.49 7.47 -10.98 -0.08 4.40 16 16 N -0.85 -3.17 8.87 31.22 0.28 -2.89 16 17 O -0.52 -7.36 17.41 -13.49 -0.23 -7.60 16 18 O -0.34 -3.62 10.09 -54.27 -0.55 -4.16 16 19 C -0.15 -2.72 3.47 -89.69 -0.31 -3.03 16 20 C 0.17 4.15 6.99 -2.84 -0.02 4.13 16 21 N -0.61 -16.08 3.70 -177.70 -0.66 -16.74 16 22 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 23 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.92 -27.72 11.51 55.49 0.64 -27.08 16 26 Si 0.91 22.47 29.56 -169.99 -5.02 17.45 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 30 C 0.13 2.68 7.64 -2.97 -0.02 2.66 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 34 H 0.40 4.87 8.60 -40.82 -0.35 4.52 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.09 7.89 -51.93 -0.41 0.68 16 37 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 38 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.53 7.70 -51.93 -0.40 0.14 16 41 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.08 0.51 8.05 -51.92 -0.42 0.09 16 43 H 0.40 0.10 8.83 -40.82 -0.36 -0.26 16 44 H 0.41 1.25 8.93 -40.82 -0.36 0.88 16 45 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 46 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 47 H 0.07 1.73 7.37 -51.93 -0.38 1.35 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 408.43 15.07 6.15 6.15 Total: -1.00 -38.74 408.43 -9.45 -48.19 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.49 Total: 2.11 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.38 Total: 5.17 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.02 Total: -57.31 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.70 Total: -21.77 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.74 -9.45 -48.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.530 kcal (2) G-P(sol) polarization free energy of solvation -38.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds