Wall clock time and date at job start Tue Mar 31 2020 22:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46469 * 2 1 4 4 N 1.46501 * 109.46989 * 120.00220 * 2 1 3 5 5 C 1.34774 * 119.99411 * 274.99914 * 4 2 1 6 6 O 1.21277 * 120.00513 * 0.02562 * 5 4 2 7 7 C 1.50709 * 119.99599 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47043 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46968 * 180.02562 * 8 7 5 10 10 H 1.09006 * 109.99013 * 54.63307 * 9 8 7 11 11 C 1.54099 * 109.87955 * 175.71951 * 9 8 7 12 12 C 1.54809 * 104.18948 * 121.45692 * 11 9 8 13 13 C 1.54994 * 102.09132 * 20.87839 * 12 11 9 14 14 H 1.08996 * 110.61935 * 81.48323 * 13 12 11 15 15 C 1.50697 * 110.61685 * 204.47839 * 13 12 11 16 16 N 1.34783 * 120.00025 * 290.52536 * 15 13 12 17 17 O 1.21283 * 120.00292 * 110.52844 * 15 13 12 18 18 O 1.43749 * 109.88102 * 293.55021 * 9 8 7 19 19 C 1.52997 * 109.46952 * 240.00155 * 2 1 3 20 20 C 1.53943 * 113.73950 * 158.74069 * 19 2 1 21 21 N 1.47814 * 86.03723 * 222.08524 * 20 19 2 22 22 C 1.36946 * 134.45745 * 204.64829 * 21 20 19 23 23 H 1.07999 * 120.00041 * 173.34347 * 22 21 20 24 24 C 1.38808 * 119.99661 * 353.34297 * 22 21 20 25 25 N 1.31620 * 120.00505 * 5.06449 * 24 22 21 26 26 Si 1.86802 * 119.99884 * 185.06361 * 24 22 21 27 27 H 1.48506 * 109.47045 * 94.98483 * 26 24 22 28 28 H 1.48501 * 109.47459 * 214.98608 * 26 24 22 29 29 H 1.48497 * 109.47034 * 334.98768 * 26 24 22 30 30 C 1.47575 * 91.05287 * 24.54796 * 21 20 19 31 31 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47716 * 299.99688 * 1 2 3 33 33 H 1.09000 * 109.47568 * 60.00070 * 1 2 3 34 34 H 0.96996 * 119.99933 * 95.00071 * 4 2 1 35 35 H 1.09006 * 109.46418 * 60.00157 * 7 5 4 36 36 H 1.08998 * 109.46990 * 300.00378 * 7 5 4 37 37 H 1.09006 * 109.46691 * 60.00650 * 8 7 5 38 38 H 1.08997 * 109.47291 * 300.00439 * 8 7 5 39 39 H 1.08995 * 110.48546 * 240.13536 * 11 9 8 40 40 H 1.08998 * 110.48397 * 2.77696 * 11 9 8 41 41 H 1.08994 * 110.90719 * 139.08094 * 12 11 9 42 42 H 1.09008 * 110.90524 * 262.64642 * 12 11 9 43 43 H 0.96996 * 119.99550 * 0.02562 * 16 15 13 44 44 H 0.97003 * 120.00170 * 179.97438 * 16 15 13 45 45 H 1.08996 * 112.94897 * 290.33332 * 19 2 1 46 46 H 1.08994 * 113.77007 * 336.34330 * 20 19 2 47 47 H 1.09002 * 113.77182 * 107.74464 * 20 19 2 48 48 H 0.96997 * 119.99997 * 180.02562 * 25 24 22 49 49 H 1.09003 * 113.76989 * 221.15645 * 30 21 20 50 50 H 1.09001 * 113.87093 * 89.76616 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1584 2.4117 7 6 2.6499 -0.7286 3.5875 8 6 2.7018 0.2547 4.7586 9 6 3.2129 -0.4663 6.0075 10 1 4.1705 -0.9428 5.7970 11 6 3.3709 0.5387 7.1649 12 6 2.4524 -0.0186 8.2795 13 6 2.3098 -1.5064 7.8690 14 1 3.1746 -2.0808 8.2009 15 6 1.0373 -2.0909 8.4258 16 7 0.9127 -2.2932 9.7525 17 8 0.1253 -2.3794 7.6802 18 8 2.2570 -1.4544 6.4271 19 6 2.0400 -0.7212 -1.2492 20 6 3.4847 -0.3520 -1.6317 21 7 2.9978 -0.3175 -3.0269 22 6 3.5874 -0.4755 -4.2527 23 1 2.9789 -0.5088 -5.1444 24 6 4.9672 -0.5929 -4.3492 25 7 5.7005 -0.6526 -3.2579 26 14 5.7832 -0.6662 -6.0279 27 1 6.2264 0.6951 -6.4227 28 1 6.9588 -1.5715 -5.9679 29 1 4.8131 -1.1803 -7.0278 30 6 1.6213 -0.0471 -2.5685 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.6493 -1.1203 3.3978 36 1 1.9777 -1.5509 3.8325 37 1 1.7026 0.6468 4.9483 38 1 3.3742 1.0767 4.5132 39 1 4.4063 0.5703 7.5040 40 1 3.0389 1.5302 6.8571 41 1 2.9274 0.0716 9.2563 42 1 1.4841 0.4820 8.2721 43 1 1.6420 -2.0622 10.3489 44 1 0.0935 -2.6691 10.1110 45 1 1.8528 -1.7947 -1.2264 46 1 3.8046 0.6191 -1.2540 47 1 4.2071 -1.1447 -1.4366 48 1 6.6647 -0.7342 -3.3254 49 1 0.8586 -0.5969 -3.1200 50 1 1.3908 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717553496.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:47 Heat of formation + Delta-G solvation = -110.987577 kcal Electronic energy + Delta-G solvation = -29277.492107 eV Core-core repulsion = 25111.602633 eV Total energy + Delta-G solvation = -4165.889474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33457 -40.94326 -39.74620 -39.33654 -36.18856 -34.88053 -34.48203 -34.15821 -32.95803 -31.86224 -29.79151 -29.31677 -26.74917 -26.05716 -25.50277 -23.69470 -22.60976 -21.84676 -21.52887 -21.38848 -20.48505 -18.75920 -18.62938 -18.06059 -17.88179 -17.35529 -17.28338 -16.90606 -16.75153 -15.97125 -15.76691 -15.70653 -15.52620 -15.35361 -14.78058 -14.70858 -14.43211 -14.27232 -14.05111 -13.92479 -13.39130 -13.28113 -13.10154 -13.01481 -12.90100 -12.83352 -12.70762 -12.63354 -12.52669 -12.04310 -11.98375 -11.89591 -11.73343 -11.57573 -11.49826 -11.25506 -11.04034 -10.88263 -10.72557 -10.70444 -10.57813 -9.97966 -8.91716 -7.92826 -5.25443 1.44254 1.46717 1.54251 1.55488 1.73450 2.19772 2.28131 2.46768 3.09428 3.27505 3.38301 3.54000 3.68721 3.77655 3.88036 3.93644 3.96593 4.00762 4.15248 4.21962 4.29927 4.33874 4.44196 4.51713 4.58262 4.62986 4.73407 4.74344 4.79102 4.84100 4.86585 4.90643 5.00407 5.04859 5.11228 5.12066 5.15852 5.24589 5.31503 5.32901 5.50287 5.58086 5.68250 5.80699 5.92462 5.96088 6.46287 6.65622 6.90881 7.33032 7.34801 7.59532 8.56528 9.25012 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.001832 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.291875 B =15283.687601 C =15819.665868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 H 0.058 0.942 4 N -0.715 5.715 5 C 0.508 3.492 6 O -0.589 6.589 7 C -0.131 4.131 8 C -0.097 4.097 9 C 0.073 3.927 10 H 0.093 0.907 11 C -0.149 4.149 12 C -0.135 4.135 13 C 0.052 3.948 14 H 0.129 0.871 15 C 0.516 3.484 16 N -0.828 5.828 17 O -0.587 6.587 18 O -0.377 6.377 19 C -0.110 4.110 20 C 0.173 3.827 21 N -0.645 5.645 22 C -0.237 4.237 23 H 0.085 0.915 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.978 3.022 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.265 1.265 30 C 0.129 3.871 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.065 0.935 43 H 0.421 0.579 44 H 0.410 0.590 45 H 0.104 0.896 46 H 0.004 0.996 47 H 0.039 0.961 48 H 0.249 0.751 49 H 0.064 0.936 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -2.803 31.459 32.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.076 0.924 4 N -0.366 5.366 5 C 0.297 3.703 6 O -0.470 6.470 7 C -0.171 4.171 8 C -0.135 4.135 9 C 0.015 3.985 10 H 0.111 0.889 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.009 4.009 14 H 0.147 0.853 15 C 0.300 3.700 16 N -0.394 5.394 17 O -0.466 6.466 18 O -0.297 6.297 19 C -0.129 4.129 20 C 0.047 3.953 21 N -0.371 5.371 22 C -0.365 4.365 23 H 0.103 0.897 24 C -0.262 4.262 25 N -0.602 5.602 26 Si 0.806 3.194 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.189 1.189 30 C 0.004 3.996 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.145 0.855 42 H 0.083 0.917 43 H 0.253 0.747 44 H 0.242 0.758 45 H 0.123 0.877 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.082 0.918 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.923 -2.272 30.492 31.145 hybrid contribution 0.802 -0.087 -0.715 1.078 sum -5.122 -2.359 29.777 30.306 Atomic orbital electron populations 1.22041 0.93773 1.02911 1.02023 1.20785 0.94780 0.95803 0.83315 0.92417 1.46066 1.66676 1.14671 1.09156 1.21313 0.76537 0.86957 0.85523 1.90649 1.52378 1.18042 1.85890 1.21658 1.04350 0.99843 0.91231 1.21486 1.02152 0.97335 0.92563 1.23003 0.92259 0.88810 0.94391 0.88904 1.23037 1.02245 0.99431 0.93908 1.23115 1.01032 0.91716 1.01417 1.23250 0.95849 0.98787 0.83024 0.85322 1.20723 0.88717 0.77113 0.83403 1.43558 1.22864 1.66535 1.06439 1.90777 1.43276 1.52627 1.59930 1.89014 1.61897 1.59570 1.19179 1.23451 0.96350 1.00493 0.92638 1.22094 0.93764 0.96341 0.83065 1.46414 1.06008 1.82714 1.01971 1.19468 0.90448 1.41811 0.84804 0.89714 1.25690 0.96638 1.02945 1.00907 1.70023 1.04581 1.57566 1.28022 0.85059 0.77960 0.77053 0.79284 1.21710 1.21926 1.18926 1.22683 0.87766 0.97457 0.91732 0.90929 0.93533 0.90800 0.75166 0.86761 0.87882 0.92870 0.90011 0.87330 0.90315 0.85483 0.91663 0.74659 0.75774 0.87743 0.97862 0.94210 0.94247 0.91769 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.31 71.98 0.67 -3.43 16 2 C 0.16 5.11 2.38 44.99 0.11 5.22 16 3 H 0.06 2.22 7.42 -2.39 -0.02 2.20 16 4 N -0.71 -20.26 5.08 -442.53 -2.25 -22.51 16 5 C 0.51 15.26 7.79 87.66 0.68 15.94 16 6 O -0.59 -22.31 15.64 -3.02 -0.05 -22.36 16 7 C -0.13 -2.90 5.61 29.85 0.17 -2.73 16 8 C -0.10 -2.07 3.99 30.59 0.12 -1.94 16 9 C 0.07 1.11 3.41 30.97 0.11 1.22 16 10 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 11 C -0.15 -1.42 6.64 31.58 0.21 -1.21 16 12 C -0.13 -1.03 6.57 31.89 0.21 -0.82 16 13 C 0.05 0.63 3.76 30.53 0.11 0.74 16 14 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 15 C 0.52 8.50 7.47 87.66 0.65 9.15 16 16 N -0.83 -4.60 8.87 -173.53 -1.54 -6.14 16 17 O -0.59 -17.28 17.41 15.17 0.26 -17.01 16 18 O -0.38 -7.76 10.09 -130.77 -1.32 -9.08 16 19 C -0.11 -3.97 3.47 -10.13 -0.04 -4.01 16 20 C 0.17 8.43 6.99 86.44 0.60 9.03 16 21 N -0.64 -33.98 3.70 -716.11 -2.65 -36.63 16 22 C -0.24 -13.64 10.70 84.03 0.90 -12.74 16 23 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.95 -58.80 11.51 21.65 0.25 -58.55 16 26 Si 0.98 46.55 29.56 68.60 2.03 48.57 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 29 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 30 C 0.13 5.21 7.64 86.49 0.66 5.87 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.91 7.52 -2.39 -0.02 1.89 16 34 H 0.41 9.60 8.60 -92.71 -0.80 8.80 16 35 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.10 2.24 7.89 -2.39 -0.02 2.22 16 37 H 0.05 1.38 8.10 -2.38 -0.02 1.36 16 38 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.90 7.70 -2.39 -0.02 0.88 16 41 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.06 0.75 8.05 -2.38 -0.02 0.73 16 43 H 0.42 -1.10 8.83 -92.71 -0.82 -1.92 16 44 H 0.41 1.94 8.93 -92.71 -0.83 1.11 16 45 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 46 H 0.00 0.19 7.99 -2.39 -0.02 0.17 16 47 H 0.04 2.13 7.37 -2.39 -0.02 2.11 16 48 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 49 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 Total: -1.00 -88.54 408.43 -1.10 -89.64 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -1.48 Total: 17.33 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 5.64 Total: 16.75 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -6.19 Total: -123.83 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -1.10 Total: -48.45 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -88.54 -1.10 -89.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553496.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.348 kcal (2) G-P(sol) polarization free energy of solvation -88.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds