Wall clock time and date at job start Tue Mar 31 2020 23:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46838 * 2 1 4 4 N 1.46490 * 109.47047 * 119.99742 * 2 1 3 5 5 C 1.36942 * 120.00431 * 274.99757 * 4 2 1 6 6 H 1.08003 * 119.99396 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00532 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00426 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99675 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 89.99912 * 9 7 5 11 11 H 1.48499 * 109.46880 * 209.99905 * 9 7 5 12 12 H 1.48496 * 109.47234 * 329.99971 * 9 7 5 13 13 C 1.52997 * 109.47109 * 239.99931 * 2 1 3 14 14 H 1.09005 * 109.55438 * 185.12459 * 13 2 1 15 15 C 1.53300 * 109.51386 * 64.99947 * 13 2 1 16 16 N 1.47148 * 108.41473 * 187.79338 * 15 13 2 17 17 C 1.34784 * 120.98330 * 230.49467 * 16 15 13 18 18 O 1.21283 * 119.99557 * 359.97438 * 17 16 15 19 19 C 1.50690 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.47125 * 179.97438 * 19 17 16 21 21 C 1.46500 * 119.99875 * 89.99688 * 20 19 17 22 22 C 1.34777 * 119.99683 * 270.00132 * 20 19 17 23 23 O 1.21281 * 120.00457 * 359.97438 * 22 20 19 24 24 C 1.50701 * 119.99716 * 179.97438 * 22 20 19 25 25 C 1.52996 * 117.49915 * 248.74790 * 24 22 20 26 26 C 1.52998 * 117.50033 * 180.08797 * 24 22 20 27 27 C 1.47148 * 118.03926 * 50.51693 * 16 15 13 28 28 C 1.53300 * 108.38206 * 309.46540 * 27 16 15 29 29 O 1.42955 * 109.22459 * 52.30018 * 28 27 16 30 30 H 1.09001 * 109.46827 * 59.99801 * 1 2 3 31 31 H 1.08995 * 109.46735 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46897 * 300.00588 * 1 2 3 33 33 H 0.97009 * 120.00016 * 95.00316 * 4 2 1 34 34 H 0.96997 * 120.00001 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68260 * 68.04945 * 15 13 2 36 36 H 1.08999 * 109.68056 * 307.53378 * 15 13 2 37 37 H 1.09000 * 109.47397 * 299.99733 * 19 17 16 38 38 H 1.09004 * 109.47328 * 59.99995 * 19 17 16 39 39 H 1.09006 * 109.46736 * 89.99960 * 21 20 19 40 40 H 1.08999 * 109.46933 * 210.00276 * 21 20 19 41 41 H 1.08994 * 109.47028 * 330.00674 * 21 20 19 42 42 H 1.09001 * 115.54908 * 34.41554 * 24 22 20 43 43 H 1.09004 * 117.50235 * 359.97438 * 25 24 22 44 44 H 1.08997 * 117.50183 * 145.01681 * 25 24 22 45 45 H 1.09000 * 117.49957 * 214.98070 * 26 24 22 46 46 H 1.09001 * 117.49897 * 359.97438 * 26 24 22 47 47 H 1.09002 * 109.68553 * 69.18322 * 27 16 15 48 48 H 1.09004 * 109.68438 * 189.74263 * 27 16 15 49 49 H 1.09005 * 109.51071 * 172.22485 * 28 27 16 50 50 H 1.08997 * 109.51211 * 292.32088 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0405 2.4243 7 6 2.6114 -0.6618 3.5093 8 7 2.7367 -0.0053 4.6432 9 14 3.0556 -2.4743 3.4254 10 1 4.4884 -2.6165 3.0621 11 1 2.8154 -3.1045 4.7485 12 1 2.2160 -3.1427 2.3991 13 6 2.0401 -0.7212 -1.2492 14 1 3.1262 -0.8022 -1.2059 15 6 1.6350 0.0697 -2.4984 16 7 1.9691 -0.7331 -3.6855 17 6 2.6752 -0.2043 -4.7045 18 8 3.0447 0.9497 -4.6515 19 6 3.0046 -1.0464 -5.9099 20 7 3.7721 -0.2476 -6.8687 21 6 5.2349 -0.2196 -6.7937 22 6 3.1323 0.4616 -7.8197 23 8 1.9213 0.4381 -7.8820 24 6 3.9217 1.2837 -8.8056 25 6 3.8140 2.8063 -8.7020 26 6 3.1375 2.0678 -9.8595 27 6 1.5092 -2.1302 -3.7275 28 6 1.9211 -2.8144 -2.4189 29 8 1.4666 -2.0293 -1.3140 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2491 -1.6317 1.1526 34 1 3.0593 -0.4627 5.4353 35 1 2.1798 1.0133 -2.5281 36 1 0.5629 0.2653 -2.4774 37 1 3.5948 -1.9089 -5.6004 38 1 2.0812 -1.3872 -6.3784 39 1 5.6456 -1.0200 -7.4093 40 1 5.5990 0.7414 -7.1569 41 1 5.5484 -0.3597 -5.7593 42 1 4.8841 0.8662 -9.1016 43 1 3.1718 3.2135 -7.9210 44 1 4.7053 3.3907 -8.9302 45 1 3.5840 2.1666 -10.8490 46 1 2.0505 1.9888 -9.8402 47 1 0.4243 -2.1567 -3.8298 48 1 1.9707 -2.6435 -4.5712 49 1 1.4721 -3.8065 -2.3698 50 1 3.0067 -2.9039 -2.3809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717614044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:59 Heat of formation + Delta-G solvation = -52.561394 kcal Electronic energy + Delta-G solvation = -30567.346764 eV Core-core repulsion = 26403.990840 eV Total energy + Delta-G solvation = -4163.355924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90850 -40.05154 -38.51477 -36.58407 -35.74552 -35.68301 -34.67459 -32.55401 -30.83766 -29.75528 -28.84508 -27.27360 -26.83222 -24.95783 -23.87696 -23.42880 -22.79212 -22.05378 -19.92053 -19.76054 -19.02531 -17.99098 -17.82266 -17.48973 -16.89917 -16.23006 -15.90594 -15.75468 -15.43249 -15.20242 -14.91623 -14.55084 -14.49776 -14.30675 -13.94421 -13.56044 -13.35030 -13.21212 -12.98367 -12.84302 -12.73990 -12.67320 -12.37654 -12.25482 -12.12646 -11.90555 -11.60320 -11.29398 -10.98565 -10.95129 -10.89336 -10.78725 -10.65436 -10.41782 -10.22251 -10.16424 -10.01734 -9.95117 -9.57087 -9.04699 -8.92093 -8.61152 -7.25339 -5.74981 -3.10215 2.07570 2.37516 2.40778 2.85232 3.39710 3.45547 3.47206 3.49561 3.79609 4.06747 4.19816 4.39604 4.50798 4.57303 4.60340 4.62027 4.66857 4.72196 4.78389 4.90067 4.92730 5.02179 5.08658 5.19789 5.24740 5.29461 5.31885 5.35534 5.52221 5.53225 5.57367 5.58778 5.68073 5.72074 5.76112 5.89095 5.91248 6.11898 6.25134 6.34278 6.48991 6.74810 6.90725 7.06995 7.14373 7.29802 7.79139 7.95727 8.01345 8.44178 9.23354 9.95619 10.16612 11.43226 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.002356 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.078984 B =11881.076235 C =12061.713964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.190 3.810 3 H 0.068 0.932 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.073 3.927 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.613 5.613 17 C 0.500 3.500 18 O -0.528 6.528 19 C 0.098 3.902 20 N -0.598 5.598 21 C 0.082 3.918 22 C 0.551 3.449 23 O -0.537 6.537 24 C -0.194 4.194 25 C -0.149 4.149 26 C -0.149 4.149 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.362 6.362 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -3.951 -30.326 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.080 3.920 3 H 0.086 0.914 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.199 1.199 13 C 0.014 3.986 14 H 0.082 0.918 15 C -0.039 4.039 16 N -0.348 5.348 17 C 0.286 3.714 18 O -0.404 6.404 19 C -0.029 4.029 20 N -0.331 5.331 21 C -0.061 4.061 22 C 0.340 3.660 23 O -0.413 6.413 24 C -0.215 4.215 25 C -0.186 4.186 26 C -0.186 4.186 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.280 6.280 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.123 0.877 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.146 -3.222 -30.013 30.349 hybrid contribution 0.637 -1.447 0.069 1.583 sum 3.783 -4.670 -29.944 30.541 Atomic orbital electron populations 1.22383 0.98116 1.01667 1.00133 1.20168 0.93046 0.94870 0.83895 0.91376 1.42705 1.79594 1.09606 1.06762 1.19080 1.36859 0.95523 0.85739 0.89158 1.24655 1.01459 0.97500 0.95517 1.69703 1.52692 1.35578 1.00222 0.86561 0.78390 0.86927 0.76862 1.21262 1.21824 1.19910 1.23027 0.97530 0.83002 0.95068 0.91815 1.22455 1.02186 0.95796 0.83424 1.48187 1.54754 1.12862 1.19041 1.21122 0.77838 0.88436 0.84005 1.90705 1.52617 1.17582 1.79498 1.21337 0.99401 0.93437 0.88680 1.47305 1.07418 1.48239 1.30107 1.21841 0.78502 1.02660 1.03095 1.19712 0.87440 0.78407 0.80452 1.90693 1.14131 1.63234 1.73283 1.22158 1.02125 0.95172 1.02087 1.22967 1.03484 0.90595 1.01550 1.22983 1.00703 1.01152 0.93768 1.22516 1.01228 0.81697 0.99725 1.22921 0.99430 0.95235 0.85709 1.88088 1.67791 1.25996 1.46119 0.94321 0.92526 0.92381 0.80107 0.93100 0.88124 0.89973 0.87386 0.86806 0.92220 0.90366 0.90805 0.85737 0.88011 0.87630 0.87842 0.87437 0.90033 0.89317 0.87736 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.06 37.16 0.34 -2.60 16 2 C 0.19 3.67 2.77 -67.93 -0.19 3.48 16 3 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 4 N -0.74 -17.77 4.91 -53.43 -0.26 -18.03 16 5 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 6 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 9 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.61 6.52 56.52 0.37 -6.24 16 13 C 0.07 1.17 2.61 -26.58 -0.07 1.10 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 15 C 0.08 1.19 5.82 -3.53 -0.02 1.17 16 16 N -0.61 -7.47 3.02 -172.28 -0.52 -7.99 16 17 C 0.50 6.46 7.78 -10.99 -0.09 6.38 16 18 O -0.53 -8.85 15.90 5.56 0.09 -8.76 16 19 C 0.10 0.90 4.26 -5.19 -0.02 0.88 16 20 N -0.60 -5.74 2.36 -182.95 -0.43 -6.17 16 21 C 0.08 0.52 10.01 59.85 0.60 1.11 16 22 C 0.55 6.27 7.46 -10.99 -0.08 6.19 16 23 O -0.54 -8.04 15.84 5.56 0.09 -7.95 16 24 C -0.19 -1.55 4.79 -91.77 -0.44 -1.99 16 25 C -0.15 -1.13 10.24 -26.70 -0.27 -1.40 16 26 C -0.15 -1.10 10.05 -26.70 -0.27 -1.37 16 27 C 0.07 0.64 6.54 -3.53 -0.02 0.61 16 28 C 0.05 0.47 6.99 37.31 0.26 0.73 16 29 O -0.36 -5.56 9.25 -35.23 -0.33 -5.89 16 30 H 0.04 0.58 6.42 -51.93 -0.33 0.25 16 31 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.37 8.77 5.45 -40.82 -0.22 8.55 16 34 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.10 1.55 7.08 -51.93 -0.37 1.18 16 36 H 0.08 1.14 6.27 -51.93 -0.33 0.82 16 37 H 0.11 0.62 7.59 -51.93 -0.39 0.23 16 38 H 0.11 1.03 7.29 -51.93 -0.38 0.65 16 39 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.44 6.64 -51.93 -0.34 0.10 16 41 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 42 H 0.12 0.66 7.27 -51.93 -0.38 0.28 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.11 0.98 7.67 -51.93 -0.40 0.58 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.49 6.05 -51.93 -0.31 0.18 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -37.70 399.08 -7.90 -45.60 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.08 Total: 6.94 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.53 Total: 7.33 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.44 Total: -60.91 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.15 Total: -22.60 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.70 -7.90 -45.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717614044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.963 kcal (2) G-P(sol) polarization free energy of solvation -37.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds