Wall clock time and date at job start Tue Mar 31 2020 22:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 O 1.21279 * 119.99507 * 240.00171 * 4 2 1 6 6 N 1.34774 * 120.00020 * 59.99861 * 4 2 1 7 7 C 1.46496 * 119.99544 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47059 * 180.02562 * 7 6 4 9 9 O 1.42902 * 110.27693 * 62.90439 * 8 7 6 10 10 C 1.54602 * 110.30722 * 300.71566 * 8 7 6 11 11 C 1.54930 * 102.92182 * 219.12828 * 10 8 7 12 12 N 1.48533 * 103.23100 * 37.41117 * 11 10 8 13 13 C 1.46897 * 111.00086 * 200.28189 * 12 11 10 14 14 C 1.50694 * 109.47344 * 307.39611 * 13 12 11 15 15 O 1.21296 * 120.00019 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00360 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00494 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99870 * 359.97438 * 17 16 14 19 19 C 1.38946 * 120.00622 * 179.97438 * 17 16 14 20 20 N 1.31424 * 119.99595 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00470 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47409 * 120.00070 * 21 19 17 24 24 H 1.48501 * 109.46972 * 240.00170 * 21 19 17 25 25 C 1.47902 * 105.81852 * 320.79260 * 12 11 10 26 26 C 1.52997 * 109.47232 * 119.99867 * 2 1 3 27 27 C 1.53001 * 117.50064 * 248.62194 * 26 2 1 28 28 C 1.52997 * 117.49949 * 179.97438 * 26 2 1 29 29 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 32 32 H 0.96994 * 119.99756 * 0.02562 * 6 4 2 33 33 H 1.08996 * 109.47366 * 299.99598 * 7 6 4 34 34 H 1.08992 * 109.47635 * 60.00246 * 7 6 4 35 35 H 0.96701 * 113.99774 * 300.70902 * 9 8 7 36 36 H 1.09004 * 110.71975 * 337.48285 * 10 8 7 37 37 H 1.09002 * 110.72551 * 100.76424 * 10 8 7 38 38 H 1.09008 * 110.66603 * 278.97484 * 11 10 8 39 39 H 1.08995 * 110.81396 * 155.91632 * 11 10 8 40 40 H 1.09000 * 109.47343 * 67.40057 * 13 12 11 41 41 H 1.09004 * 109.47415 * 187.39173 * 13 12 11 42 42 H 0.97007 * 120.00072 * 359.97438 * 16 14 13 43 43 H 0.96997 * 119.99263 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.92353 * 265.97707 * 25 12 11 45 45 H 1.09004 * 109.91674 * 144.68183 * 25 12 11 46 46 H 1.09005 * 115.54762 * 34.32856 * 26 2 1 47 47 H 1.08997 * 117.49845 * 359.97438 * 27 26 2 48 48 H 1.08999 * 117.50024 * 145.02000 * 27 26 2 49 49 H 1.09006 * 117.50146 * 214.97575 * 28 26 2 50 50 H 1.09003 * 117.49981 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9410 -3.6507 8 6 1.6852 -0.2193 -4.9000 9 8 2.2077 1.1098 -4.9518 10 6 0.1395 -0.1912 -4.9107 11 6 -0.2011 -0.4308 -6.4029 12 7 0.8276 -1.4122 -6.8331 13 6 0.9811 -1.4078 -8.2940 14 6 -0.3674 -1.5908 -8.9414 15 8 -1.3588 -1.7133 -8.2534 16 7 -0.4717 -1.6193 -10.2848 17 6 -1.6984 -1.7863 -10.8737 18 1 -2.5812 -1.8954 -10.2612 19 6 -1.8061 -1.8151 -12.2587 20 7 -0.7318 -1.6828 -13.0042 21 14 -3.4775 -2.0419 -13.0612 22 1 -4.5186 -2.1673 -12.0096 23 1 -3.7784 -0.8676 -13.9188 24 1 -3.4644 -3.2720 -13.8931 25 6 2.0820 -0.9994 -6.1671 26 6 2.0400 -0.7212 1.2492 27 6 2.7419 0.1227 2.3151 28 6 3.5550 -0.8285 1.4340 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1494 0.5389 -2.5435 33 1 3.2846 -0.9413 -3.6509 34 1 1.8309 -1.9684 -3.6506 35 1 1.9715 1.6552 -4.1891 36 1 -0.2650 -0.9904 -4.2895 37 1 -0.2309 0.7797 -4.5815 38 1 -0.1113 0.4948 -6.9715 39 1 -1.2014 -0.8505 -6.5093 40 1 1.4106 -0.4576 -8.6113 41 1 1.6410 -2.2224 -8.5925 42 1 0.3212 -1.5216 -10.8350 43 1 -0.8071 -1.7026 -13.9710 44 1 2.6617 -0.3585 -6.8314 45 1 2.6645 -1.8794 -5.8942 46 1 1.4310 -1.5585 1.5902 47 1 2.8407 1.1916 2.1262 48 1 2.5947 -0.1592 3.3577 49 1 3.9425 -1.7360 1.8972 50 1 4.1884 -0.3850 0.6657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724391011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:47 Heat of formation + Delta-G solvation = -89.826573 kcal Electronic energy + Delta-G solvation = -29695.972537 eV Core-core repulsion = 25531.000673 eV Total energy + Delta-G solvation = -4164.971864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62798 -39.66092 -38.19135 -37.31855 -35.88879 -34.58051 -33.91384 -32.81012 -31.47577 -30.95746 -29.28706 -27.24923 -25.57626 -24.71185 -23.91154 -22.63700 -21.99299 -21.28885 -20.53463 -19.99013 -19.28714 -17.98902 -17.77801 -16.80938 -16.31804 -16.06536 -15.91060 -15.52342 -15.17076 -15.10203 -14.76799 -14.54030 -14.40744 -14.07225 -13.85012 -13.61594 -13.32073 -13.04518 -13.02439 -12.81011 -12.58039 -12.32589 -12.16652 -11.88612 -11.85975 -11.66640 -11.56355 -11.46249 -11.22150 -11.17778 -10.99602 -10.85449 -10.75465 -10.41211 -10.36696 -10.25377 -10.09500 -9.84979 -9.51963 -9.36827 -8.42197 -8.05602 -7.93908 -6.44352 -3.85312 2.39538 2.75588 3.14454 3.25365 3.32204 3.56519 3.73634 3.86612 4.12868 4.13528 4.25681 4.34533 4.40468 4.47388 4.53821 4.68096 4.71290 4.82120 4.86363 5.05234 5.08111 5.22592 5.26696 5.29658 5.33704 5.38998 5.43568 5.56873 5.57280 5.63346 5.66548 5.68506 5.72003 5.77342 5.80556 5.90197 5.92829 5.94541 6.10346 6.20344 6.24152 6.59199 7.09496 7.15112 7.21839 7.36898 7.53060 7.95510 8.03250 8.58386 9.15099 9.50795 10.02053 10.73308 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.001830 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.219146 B =15295.905061 C =15665.719655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.096 0.904 4 C 0.516 3.484 5 O -0.527 6.527 6 N -0.731 5.731 7 C 0.103 3.897 8 C 0.111 3.889 9 O -0.550 6.550 10 C -0.152 4.152 11 C 0.042 3.958 12 N -0.492 5.492 13 C 0.035 3.965 14 C 0.442 3.558 15 O -0.582 6.582 16 N -0.561 5.561 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.900 5.900 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.048 3.952 26 C -0.136 4.136 27 C -0.184 4.184 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.396 0.604 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.370 0.630 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.121 0.879 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.393 0.607 43 H 0.271 0.729 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 7.385 25.087 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.114 0.886 4 C 0.302 3.698 5 O -0.402 6.402 6 N -0.384 5.384 7 C -0.021 4.021 8 C 0.070 3.930 9 O -0.355 6.355 10 C -0.190 4.190 11 C -0.085 4.085 12 N -0.217 5.217 13 C -0.096 4.096 14 C 0.228 3.772 15 O -0.467 6.467 16 N -0.197 5.197 17 C -0.429 4.429 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.541 5.541 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.081 4.081 26 C -0.155 4.155 27 C -0.221 4.221 28 C -0.193 4.193 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.217 0.783 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.139 0.861 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.329 5.811 24.958 26.653 hybrid contribution -0.437 1.364 -0.769 1.625 sum 6.892 7.174 24.189 26.155 Atomic orbital electron populations 1.21759 0.92299 1.03138 1.02788 1.20907 0.97663 0.99842 0.91744 0.88585 1.20629 0.80095 0.84773 0.84286 1.90721 1.37116 1.25808 1.86602 1.45983 1.54283 1.32308 1.05856 1.22073 0.99905 0.97249 0.82897 1.22339 0.93414 0.82773 0.94505 1.86650 1.77563 1.23315 1.48000 1.23298 0.94040 1.02178 0.99511 1.23436 0.99584 0.93788 0.91734 1.64725 1.03962 1.47002 1.05963 1.22123 0.97909 1.01452 0.88133 1.19671 0.89740 0.84699 0.83091 1.90430 1.38607 1.55582 1.62070 1.41855 1.10281 1.63075 1.04468 1.19753 0.86669 1.46521 0.89946 0.87805 1.25280 0.99091 0.97290 0.96290 1.69628 1.28438 1.50108 1.05957 0.85791 0.81645 0.77791 0.79052 1.19219 1.20770 1.20717 1.22837 0.93831 0.97987 0.93445 1.21943 0.96235 1.01590 0.95716 1.23103 1.05122 0.97494 0.96334 1.22790 0.93457 1.01121 1.01928 0.91759 0.91132 0.91976 0.76988 0.90651 0.89758 0.78253 0.89802 0.90872 0.94245 0.86140 0.93087 0.89022 0.77409 0.91880 0.92007 0.89126 0.87456 0.88911 0.88736 0.88797 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.07 37.16 0.34 -0.42 16 2 C -0.08 -0.53 2.88 -91.77 -0.26 -0.80 16 3 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16 4 C 0.52 4.96 7.03 -10.98 -0.08 4.88 16 5 O -0.53 -7.19 15.08 5.56 0.08 -7.11 16 6 N -0.73 -5.81 5.01 -60.30 -0.30 -6.11 16 7 C 0.10 1.04 4.50 -4.04 -0.02 1.02 16 8 C 0.11 1.20 1.05 -89.26 -0.09 1.11 16 9 O -0.55 -5.71 12.95 -35.23 -0.46 -6.16 16 10 C -0.15 -1.75 5.64 -24.87 -0.14 -1.89 16 11 C 0.04 0.68 5.31 -1.90 -0.01 0.67 16 12 N -0.49 -8.18 5.26 -231.90 -1.22 -9.40 16 13 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 14 C 0.44 10.32 7.49 -10.99 -0.08 10.23 16 15 O -0.58 -15.16 13.09 5.54 0.07 -15.08 16 16 N -0.56 -14.12 5.29 -10.97 -0.06 -14.18 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 18 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 19 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 20 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 21 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 C 0.05 0.63 6.18 -2.75 -0.02 0.61 16 26 C -0.14 -1.03 4.72 -90.62 -0.43 -1.46 16 27 C -0.18 -1.12 10.18 -26.71 -0.27 -1.40 16 28 C -0.16 -1.27 8.97 -26.71 -0.24 -1.51 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 32 H 0.40 2.11 6.75 -40.82 -0.28 1.83 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.37 2.36 8.14 45.56 0.37 2.73 16 36 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 37 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.04 0.68 8.02 -51.92 -0.42 0.26 16 39 H 0.12 2.36 5.96 -51.93 -0.31 2.05 16 40 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.06 0.84 7.39 -51.93 -0.38 0.46 16 45 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 46 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16 47 H 0.09 0.48 8.05 -51.93 -0.42 0.06 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.83 8.10 -51.93 -0.42 0.40 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -33.22 402.09 -9.19 -42.42 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -7.50 Total: 13.59 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.57 Total: 3.76 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.86 Total: -53.34 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.30 Total: -28.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.22 -9.19 -42.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724391011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.408 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds