Wall clock time and date at job start Tue Mar 31 2020 22:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 O 1.21279 * 119.99507 * 240.00171 * 4 2 1 6 6 N 1.34774 * 120.00020 * 59.99861 * 4 2 1 7 7 C 1.46496 * 119.99544 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.47059 * 180.02562 * 7 6 4 9 9 O 1.42902 * 110.27693 * 62.90439 * 8 7 6 10 10 C 1.54602 * 110.30722 * 300.71566 * 8 7 6 11 11 C 1.54930 * 102.92182 * 219.12828 * 10 8 7 12 12 N 1.48533 * 103.23100 * 37.41117 * 11 10 8 13 13 C 1.46897 * 111.00086 * 200.28189 * 12 11 10 14 14 C 1.50694 * 109.47344 * 307.39611 * 13 12 11 15 15 O 1.21296 * 120.00019 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00360 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00494 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99870 * 359.97438 * 17 16 14 19 19 C 1.38946 * 120.00622 * 179.97438 * 17 16 14 20 20 N 1.31424 * 119.99595 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00470 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47409 * 120.00070 * 21 19 17 24 24 H 1.48501 * 109.46972 * 240.00170 * 21 19 17 25 25 C 1.47902 * 105.81852 * 320.79260 * 12 11 10 26 26 C 1.52997 * 109.47232 * 119.99867 * 2 1 3 27 27 C 1.53001 * 117.50064 * 248.62194 * 26 2 1 28 28 C 1.52997 * 117.49949 * 179.97438 * 26 2 1 29 29 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 31 31 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 32 32 H 0.96994 * 119.99756 * 0.02562 * 6 4 2 33 33 H 1.08996 * 109.47366 * 299.99598 * 7 6 4 34 34 H 1.08992 * 109.47635 * 60.00246 * 7 6 4 35 35 H 0.96701 * 113.99774 * 300.70902 * 9 8 7 36 36 H 1.09004 * 110.71975 * 337.48285 * 10 8 7 37 37 H 1.09002 * 110.72551 * 100.76424 * 10 8 7 38 38 H 1.09008 * 110.66603 * 278.97484 * 11 10 8 39 39 H 1.08995 * 110.81396 * 155.91632 * 11 10 8 40 40 H 1.09000 * 109.47343 * 67.40057 * 13 12 11 41 41 H 1.09004 * 109.47415 * 187.39173 * 13 12 11 42 42 H 0.97007 * 120.00072 * 359.97438 * 16 14 13 43 43 H 0.96997 * 119.99263 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.92353 * 265.97707 * 25 12 11 45 45 H 1.09004 * 109.91674 * 144.68183 * 25 12 11 46 46 H 1.09005 * 115.54762 * 34.32856 * 26 2 1 47 47 H 1.08997 * 117.49845 * 359.97438 * 27 26 2 48 48 H 1.08999 * 117.50024 * 145.02000 * 27 26 2 49 49 H 1.09006 * 117.50146 * 214.97575 * 28 26 2 50 50 H 1.09003 * 117.49981 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9410 -3.6507 8 6 1.6852 -0.2193 -4.9000 9 8 2.2077 1.1098 -4.9518 10 6 0.1395 -0.1912 -4.9107 11 6 -0.2011 -0.4308 -6.4029 12 7 0.8276 -1.4122 -6.8331 13 6 0.9811 -1.4078 -8.2940 14 6 -0.3674 -1.5908 -8.9414 15 8 -1.3588 -1.7133 -8.2534 16 7 -0.4717 -1.6193 -10.2848 17 6 -1.6984 -1.7863 -10.8737 18 1 -2.5812 -1.8954 -10.2612 19 6 -1.8061 -1.8151 -12.2587 20 7 -0.7318 -1.6828 -13.0042 21 14 -3.4775 -2.0419 -13.0612 22 1 -4.5186 -2.1673 -12.0096 23 1 -3.7784 -0.8676 -13.9188 24 1 -3.4644 -3.2720 -13.8931 25 6 2.0820 -0.9994 -6.1671 26 6 2.0400 -0.7212 1.2492 27 6 2.7419 0.1227 2.3151 28 6 3.5550 -0.8285 1.4340 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1494 0.5389 -2.5435 33 1 3.2846 -0.9413 -3.6509 34 1 1.8309 -1.9684 -3.6506 35 1 1.9715 1.6552 -4.1891 36 1 -0.2650 -0.9904 -4.2895 37 1 -0.2309 0.7797 -4.5815 38 1 -0.1113 0.4948 -6.9715 39 1 -1.2014 -0.8505 -6.5093 40 1 1.4106 -0.4576 -8.6113 41 1 1.6410 -2.2224 -8.5925 42 1 0.3212 -1.5216 -10.8350 43 1 -0.8071 -1.7026 -13.9710 44 1 2.6617 -0.3585 -6.8314 45 1 2.6645 -1.8794 -5.8942 46 1 1.4310 -1.5585 1.5902 47 1 2.8407 1.1916 2.1262 48 1 2.5947 -0.1592 3.3577 49 1 3.9425 -1.7360 1.8972 50 1 4.1884 -0.3850 0.6657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724391011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:46 Heat of formation + Delta-G solvation = -117.031730 kcal Electronic energy + Delta-G solvation = -29697.152241 eV Core-core repulsion = 25531.000673 eV Total energy + Delta-G solvation = -4166.151568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49382 -40.76026 -39.74485 -38.00721 -37.07749 -35.87358 -35.37942 -33.45315 -33.30850 -32.21990 -30.31772 -28.63247 -26.82087 -25.73761 -25.08625 -23.19538 -22.95595 -22.23168 -21.44014 -21.09513 -20.72612 -19.89660 -18.61168 -17.89017 -17.48241 -17.18550 -16.76928 -16.74057 -16.33281 -16.09565 -16.06634 -15.76053 -15.61102 -15.37447 -14.88548 -14.75192 -14.60232 -14.35559 -13.80808 -13.73971 -13.46941 -13.41328 -13.23709 -13.16330 -13.00665 -12.76066 -12.65023 -12.43122 -12.37820 -12.33722 -12.31832 -12.10852 -12.00225 -11.84905 -11.50785 -11.35035 -11.03277 -10.95963 -10.57919 -10.19457 -10.13892 -10.02001 -9.41135 -8.47935 -5.96736 1.35815 1.41447 1.55596 1.66924 2.01397 2.05801 2.27253 2.69035 2.99865 3.17679 3.20695 3.27520 3.44307 3.59743 3.60803 3.74399 3.84471 3.94983 4.19518 4.20804 4.26518 4.30794 4.32424 4.38899 4.43526 4.49590 4.58250 4.60679 4.68094 4.72054 4.78915 4.83365 4.90873 4.96538 5.02840 5.06361 5.09025 5.21868 5.23171 5.28146 5.33887 5.39994 5.40549 5.79582 5.88412 6.05733 6.50360 6.58408 6.71737 7.11175 7.26245 7.53195 8.08484 8.69722 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.001830 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.219146 B =15295.905061 C =15665.719655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 H 0.121 0.879 4 C 0.513 3.487 5 O -0.573 6.573 6 N -0.717 5.717 7 C 0.114 3.886 8 C 0.129 3.871 9 O -0.558 6.558 10 C -0.138 4.138 11 C 0.039 3.961 12 N -0.507 5.507 13 C 0.046 3.954 14 C 0.440 3.560 15 O -0.612 6.612 16 N -0.572 5.572 17 C -0.332 4.332 18 H 0.081 0.919 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.044 3.956 26 C -0.147 4.147 27 C -0.160 4.160 28 C -0.177 4.177 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.412 0.588 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.390 0.610 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.026 0.974 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.085 0.915 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.413 9.096 26.270 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.138 0.862 4 C 0.300 3.700 5 O -0.452 6.452 6 N -0.371 5.371 7 C -0.011 4.011 8 C 0.087 3.913 9 O -0.366 6.366 10 C -0.176 4.176 11 C -0.088 4.088 12 N -0.232 5.232 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.499 6.499 16 N -0.209 5.209 17 C -0.461 4.461 18 H 0.099 0.901 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.085 4.085 26 C -0.166 4.166 27 C -0.197 4.197 28 C -0.214 4.214 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.241 0.759 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.127 0.873 48 H 0.122 0.878 49 H 0.103 0.897 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.386 7.565 26.153 28.209 hybrid contribution -0.418 0.835 -1.085 1.431 sum 6.967 8.399 25.068 27.341 Atomic orbital electron populations 1.21775 0.91010 1.02633 1.04329 1.20935 0.98526 1.00349 0.89547 0.86150 1.21231 0.79225 0.84228 0.85299 1.90708 1.39272 1.27956 1.87247 1.45828 1.53965 1.32461 1.04864 1.21808 0.99496 0.96522 0.83287 1.21989 0.92622 0.83117 0.93566 1.86620 1.77527 1.22988 1.49482 1.23232 0.94591 1.03910 0.95915 1.23266 0.97839 0.92676 0.95032 1.64693 1.05772 1.47787 1.04988 1.22009 0.94563 1.02899 0.89035 1.20616 0.91492 0.82671 0.82465 1.90429 1.40491 1.56291 1.62645 1.41926 1.09715 1.63976 1.05268 1.19713 0.87076 1.48730 0.90621 0.90106 1.26065 1.02696 0.96372 0.96212 1.69690 1.29994 1.50017 1.06440 0.84849 0.77186 0.78264 0.77894 1.19694 1.19597 1.19700 1.22917 0.92243 0.99034 0.94265 1.22032 0.95505 1.02160 0.96902 1.23174 1.02367 0.97838 0.96291 1.22750 0.93946 1.01820 1.02877 0.93299 0.89574 0.90484 0.75079 0.91181 0.91372 0.75931 0.89707 0.87814 0.95527 0.89967 0.91557 0.87197 0.77066 0.91306 0.91946 0.87974 0.88322 0.87307 0.87762 0.89675 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.07 71.98 0.65 -0.46 16 2 C -0.07 -0.80 2.88 -11.54 -0.03 -0.83 16 3 H 0.12 0.77 7.90 -2.39 -0.02 0.75 16 4 C 0.51 9.13 7.03 87.66 0.62 9.75 16 5 O -0.57 -15.63 15.08 -3.02 -0.05 -15.67 16 6 N -0.72 -9.78 5.01 -463.07 -2.32 -12.10 16 7 C 0.11 2.11 4.50 86.38 0.39 2.50 16 8 C 0.13 2.52 1.05 -9.91 -0.01 2.51 16 9 O -0.56 -9.87 12.95 -148.98 -1.93 -11.80 16 10 C -0.14 -2.92 5.64 31.80 0.18 -2.75 16 11 C 0.04 1.29 5.31 86.65 0.46 1.74 16 12 N -0.51 -16.68 5.26 -887.59 -4.67 -21.34 16 13 C 0.05 1.66 5.52 85.56 0.47 2.13 16 14 C 0.44 21.04 7.49 87.66 0.66 21.69 16 15 O -0.61 -33.10 13.09 -3.08 -0.04 -33.14 16 16 N -0.57 -29.53 5.29 -306.99 -1.62 -31.16 16 17 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 18 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 19 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 20 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 21 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C 0.04 1.09 6.18 86.45 0.53 1.62 16 26 C -0.15 -2.05 4.72 -10.80 -0.05 -2.10 16 27 C -0.16 -1.62 10.18 30.61 0.31 -1.31 16 28 C -0.18 -2.83 8.97 30.61 0.27 -2.56 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.38 7.56 -2.39 -0.02 0.36 16 32 H 0.41 2.94 6.75 -92.71 -0.63 2.31 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.39 3.42 8.14 -74.06 -0.60 2.82 16 36 H 0.08 1.82 7.86 -2.38 -0.02 1.80 16 37 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 38 H 0.03 0.92 8.02 -2.38 -0.02 0.90 16 39 H 0.08 3.34 5.96 -2.39 -0.01 3.33 16 40 H 0.07 2.19 7.81 -2.39 -0.02 2.17 16 41 H 0.11 3.54 8.14 -2.38 -0.02 3.52 16 42 H 0.40 19.53 7.90 -92.70 -0.73 18.80 16 43 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.06 1.58 7.39 -2.39 -0.02 1.56 16 45 H 0.10 2.31 7.68 -2.39 -0.02 2.30 16 46 H 0.10 1.51 8.11 -2.38 -0.02 1.49 16 47 H 0.11 0.77 8.05 -2.39 -0.02 0.75 16 48 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -74.64 402.09 -3.57 -78.21 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.99 Total: 37.95 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 5.73 Total: 13.66 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -8.33 Total: -114.14 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -2.01 Total: -60.60 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -74.64 -3.57 -78.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724391011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.819 kcal (2) G-P(sol) polarization free energy of solvation -74.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds