Wall clock time and date at job start Tue Mar 31 2020 22:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46990 * 2 1 4 4 C 1.53000 * 109.46593 * 240.00153 * 2 1 3 5 5 C 1.53001 * 109.46617 * 175.00016 * 4 2 1 6 6 C 1.53002 * 109.47127 * 179.97438 * 5 4 2 7 7 N 1.46896 * 109.47457 * 179.97438 * 6 5 4 8 8 C 1.46901 * 111.00184 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47186 * 180.02562 * 8 7 6 10 10 O 1.21296 * 119.99952 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00112 * 180.02562 * 9 8 7 12 12 C 1.37096 * 120.00218 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99812 * 359.97438 * 12 11 9 14 14 C 1.38944 * 120.00226 * 179.97438 * 12 11 9 15 15 N 1.31406 * 119.99766 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00043 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47277 * 60.00033 * 16 14 12 18 18 H 1.48501 * 109.47479 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47465 * 300.00019 * 16 14 12 20 20 N 1.46497 * 109.47219 * 120.00288 * 2 1 3 21 21 C 1.34781 * 119.99793 * 275.00189 * 20 2 1 22 22 O 1.21609 * 120.00105 * 359.97438 * 21 20 2 23 23 C 1.47104 * 119.99911 * 180.02562 * 21 20 2 24 24 C 1.32081 * 118.87651 * 179.97438 * 23 21 20 25 25 C 1.50274 * 122.57596 * 180.02562 * 24 23 21 26 26 O 1.42892 * 110.09649 * 344.64088 * 25 24 23 27 27 C 1.43274 * 113.09723 * 50.52179 * 26 25 24 28 28 C 1.50418 * 118.87335 * 0.22590 * 23 21 20 29 29 H 1.09004 * 109.46754 * 299.99848 * 1 2 3 30 30 H 1.08997 * 109.47183 * 59.99746 * 1 2 3 31 31 H 1.08996 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47154 * 294.99878 * 4 2 1 33 33 H 1.08995 * 109.47516 * 55.00503 * 4 2 1 34 34 H 1.08999 * 109.47246 * 299.99806 * 5 4 2 35 35 H 1.09001 * 109.47309 * 60.00485 * 5 4 2 36 36 H 1.09000 * 109.47638 * 300.00589 * 6 5 4 37 37 H 1.09009 * 109.46544 * 60.00176 * 6 5 4 38 38 H 1.00896 * 111.00205 * 303.96003 * 7 6 5 39 39 H 1.08999 * 109.46899 * 299.99771 * 8 7 6 40 40 H 1.08989 * 109.47213 * 60.00351 * 8 7 6 41 41 H 0.97003 * 119.99617 * 359.97438 * 11 9 8 42 42 H 0.97005 * 120.00122 * 180.02562 * 15 14 12 43 43 H 0.97000 * 120.00109 * 94.99227 * 20 2 1 44 44 H 1.08002 * 118.71405 * 0.35187 * 24 23 21 45 45 H 1.09004 * 109.36042 * 104.82669 * 25 24 23 46 46 H 1.08997 * 109.36962 * 224.44278 * 25 24 23 47 47 H 1.08995 * 109.63703 * 50.86361 * 27 26 25 48 48 H 1.09002 * 109.63129 * 171.47279 * 27 26 25 49 49 H 1.09002 * 109.59879 * 43.43043 * 28 23 21 50 50 H 1.08999 * 109.25703 * 283.52430 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3350 -2.5627 7 7 5.5388 -1.2309 -2.6250 8 6 6.0650 -1.9136 -3.8145 9 6 7.5664 -1.7863 -3.8437 10 8 8.1414 -1.1854 -2.9608 11 7 8.2701 -2.3391 -4.8515 12 6 9.6358 -2.2228 -4.8785 13 1 10.1478 -1.6878 -4.0923 14 6 10.3613 -2.7932 -5.9171 15 7 9.7384 -3.4446 -6.8734 16 14 12.2221 -2.6341 -5.9542 17 1 12.7964 -3.2538 -4.7329 18 1 12.7543 -3.3249 -7.1561 19 1 12.5953 -1.1975 -6.0026 20 7 2.0184 -0.6906 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8583 1.1617 2.4117 23 6 2.6380 -0.7116 3.5581 24 6 2.7560 -0.0312 4.6840 25 6 3.2490 -0.6557 5.9588 26 8 3.2104 -2.0803 5.8547 27 6 3.8432 -2.5745 4.6681 28 6 2.9938 -2.1699 3.4604 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4370 -1.3574 35 1 3.9994 -1.0729 -0.4261 36 1 3.7864 -2.3853 -2.5188 37 1 3.6402 -0.8758 -3.4506 38 1 5.8340 -0.2664 -2.6018 39 1 5.7909 -2.9680 -3.7792 40 1 5.6439 -1.4584 -4.7107 41 1 7.8102 -2.8193 -5.5578 42 1 10.2449 -3.8432 -7.5984 43 1 2.2490 -1.6318 1.1525 44 1 2.4826 1.0136 4.6899 45 1 4.2738 -0.3346 6.1457 46 1 2.6156 -0.3364 6.7863 47 1 4.8390 -2.1411 4.5763 48 1 3.9163 -3.6609 4.7174 49 1 3.5561 -2.3484 2.5438 50 1 2.0794 -2.7629 3.4463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725382183.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:13 Heat of formation + Delta-G solvation = -145.532517 kcal Electronic energy + Delta-G solvation = -28588.552491 eV Core-core repulsion = 24421.165036 eV Total energy + Delta-G solvation = -4167.387455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36901 -40.16803 -39.82792 -38.05729 -36.68880 -35.85856 -34.90932 -33.48077 -33.19147 -32.08655 -31.28373 -28.65579 -27.20189 -26.64621 -25.06452 -24.67964 -23.01814 -22.31132 -21.66109 -21.03955 -19.90678 -19.55879 -18.59976 -17.82700 -17.64061 -17.15351 -16.97501 -16.50350 -16.32359 -16.26344 -16.01350 -15.78227 -15.58829 -15.23962 -15.10938 -14.83379 -14.56636 -14.29503 -14.21195 -14.04974 -13.64932 -13.55880 -13.46206 -13.27536 -13.06346 -12.96859 -12.76301 -12.54464 -12.44391 -12.32905 -12.16045 -12.09780 -11.86014 -11.76426 -11.56001 -11.50643 -11.20697 -10.59506 -10.36175 -10.27586 -10.02610 -10.00098 -9.31502 -8.47209 -5.96147 0.26318 1.39534 1.41565 1.52485 2.04414 2.16517 2.17765 2.28875 2.91927 2.92478 3.19884 3.49215 3.57936 3.68214 3.78091 3.85525 4.04251 4.12673 4.24713 4.28474 4.30283 4.32489 4.43158 4.44504 4.52015 4.52545 4.58227 4.64901 4.67921 4.69758 4.79641 4.81326 4.86492 4.91407 4.94630 5.04108 5.23736 5.24324 5.28100 5.38996 5.40450 5.43239 5.56377 5.90226 6.08378 6.12658 6.39362 6.51546 6.59554 7.11761 7.17876 7.55365 8.10887 8.69830 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.001811 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.558039 B =15461.498729 C =17074.727244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.063 0.937 4 C -0.112 4.112 5 C -0.111 4.111 6 C 0.061 3.939 7 N -0.688 5.688 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.572 5.572 12 C -0.336 4.336 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.272 1.272 18 H -0.270 1.270 19 H -0.272 1.272 20 N -0.705 5.705 21 C 0.547 3.453 22 O -0.588 6.588 23 C -0.182 4.182 24 C -0.113 4.113 25 C 0.084 3.916 26 O -0.394 6.394 27 C 0.054 3.946 28 C -0.116 4.116 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.340 0.660 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.413 0.587 44 H 0.124 0.876 45 H 0.088 0.912 46 H 0.130 0.870 47 H 0.060 0.940 48 H 0.120 0.880 49 H 0.099 0.901 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.078 0.185 17.197 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.067 4.067 7 N -0.320 5.320 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.465 4.465 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.198 1.198 20 N -0.357 5.357 21 C 0.336 3.664 22 O -0.471 6.471 23 C -0.185 4.185 24 C -0.133 4.133 25 C 0.008 3.992 26 O -0.313 6.313 27 C -0.022 4.022 28 C -0.153 4.153 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.158 0.842 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.250 0.750 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.148 0.852 47 H 0.078 0.922 48 H 0.138 0.862 49 H 0.118 0.882 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.823 0.622 18.133 27.619 hybrid contribution 0.762 0.572 -1.495 1.773 sum -20.061 1.194 16.638 26.090 Atomic orbital electron populations 1.22113 0.94243 1.02964 1.02142 1.21026 0.94560 0.96699 0.84160 0.91826 1.21792 0.94151 1.02363 0.96750 1.21491 0.95730 0.99889 0.97815 1.22079 0.85438 1.01723 0.97473 1.60107 1.11013 1.20840 1.40025 1.21532 0.90119 1.01817 0.93214 1.20956 0.90758 0.83053 0.82959 1.90490 1.72876 1.47704 1.40144 1.41932 1.06878 1.49115 1.23047 1.19623 0.83110 1.34464 1.09321 0.90417 1.26045 1.04955 0.95668 0.94627 1.69661 1.38366 1.35632 1.12325 0.84988 0.76752 0.78593 0.78001 1.19704 1.19408 1.19751 1.45967 1.66105 1.14595 1.09007 1.18783 0.76941 0.86110 0.84545 1.90753 1.52880 1.17569 1.85879 1.21016 1.06186 0.97856 0.93439 1.23889 0.93421 1.01036 0.94974 1.21758 1.02402 0.80308 0.94768 1.88117 1.79610 1.20717 1.42806 1.22826 0.94869 1.01317 0.83228 1.21109 1.02362 0.90847 1.00954 0.94406 0.90191 0.90883 0.89038 0.88837 0.93306 0.91853 0.89765 0.94264 0.84165 0.87583 0.91671 0.76906 0.91252 0.74957 0.85801 0.89445 0.85236 0.92213 0.86160 0.88247 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.48 71.98 0.68 -1.46 16 2 C 0.14 2.20 2.57 44.99 0.12 2.31 16 3 H 0.06 1.36 7.58 -2.39 -0.02 1.34 16 4 C -0.11 -1.34 4.75 30.59 0.15 -1.19 16 5 C -0.11 -1.99 5.36 30.60 0.16 -1.83 16 6 C 0.06 1.25 5.68 86.30 0.49 1.74 16 7 N -0.69 -21.15 6.13 -517.94 -3.17 -24.32 16 8 C 0.07 2.20 6.17 85.56 0.53 2.73 16 9 C 0.44 20.74 7.82 87.66 0.69 21.43 16 10 O -0.63 -35.01 15.78 -3.08 -0.05 -35.06 16 11 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 12 C -0.34 -19.11 9.68 84.04 0.81 -18.30 16 13 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 14 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 15 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 16 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 N -0.71 -11.24 4.48 -446.13 -2.00 -13.24 16 21 C 0.55 11.98 7.69 86.57 0.67 12.64 16 22 O -0.59 -17.63 15.72 -4.06 -0.06 -17.70 16 23 C -0.18 -3.21 5.86 -18.58 -0.11 -3.31 16 24 C -0.11 -1.91 9.58 24.60 0.24 -1.68 16 25 C 0.08 1.04 7.04 71.10 0.50 1.54 16 26 O -0.39 -6.11 10.83 -148.98 -1.61 -7.72 16 27 C 0.05 0.64 6.88 72.01 0.50 1.14 16 28 C -0.12 -1.37 5.27 29.79 0.16 -1.21 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.25 7.75 -2.39 -0.02 1.23 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.34 11.36 8.43 -89.70 -0.76 10.60 16 39 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 42 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 43 H 0.41 4.51 6.92 -92.71 -0.64 3.87 16 44 H 0.12 2.34 7.29 -2.91 -0.02 2.32 16 45 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 0.71 8.09 -2.39 -0.02 0.69 16 48 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.10 0.95 7.33 -2.39 -0.02 0.93 16 50 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -76.15 412.24 -1.34 -77.49 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: -1.17 Total: 41.40 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.04 Total: 14.33 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -6.51 Total: -117.58 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -1.73 Total: -60.48 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.15 -1.34 -77.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725382183.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.044 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds