Wall clock time and date at job start Tue Mar 31 2020 22:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47237 * 2 1 4 4 C 1.53002 * 109.47018 * 240.00895 * 2 1 3 5 5 C 1.53004 * 109.47098 * 174.99974 * 4 2 1 6 6 C 1.53001 * 109.46987 * 179.97438 * 5 4 2 7 7 N 1.46895 * 109.47256 * 179.97438 * 6 5 4 8 8 C 1.46903 * 111.00386 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47043 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00246 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99518 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99878 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99810 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00158 * 180.02562 * 12 11 9 15 15 N 1.31403 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46999 * 60.00105 * 16 14 12 18 18 H 1.48495 * 109.47293 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47568 * 300.00654 * 16 14 12 20 20 N 1.46495 * 109.47586 * 120.00782 * 2 1 3 21 21 C 1.34784 * 119.99801 * 275.00230 * 20 2 1 22 22 O 1.21286 * 119.99663 * 359.97438 * 21 20 2 23 23 C 1.50696 * 119.99813 * 179.97438 * 21 20 2 24 24 H 1.08999 * 115.51470 * 34.63048 * 23 21 20 25 25 C 1.53006 * 117.43057 * 179.97438 * 23 21 20 26 26 H 1.09000 * 119.80899 * 355.31377 * 25 23 21 27 27 C 1.54476 * 118.06652 * 198.02788 * 25 23 21 28 28 O 1.44417 * 104.80699 * 273.17886 * 27 25 23 29 29 C 1.44423 * 105.27899 * 40.50531 * 28 27 25 30 30 C 1.52999 * 117.38678 * 249.32887 * 23 21 20 31 31 H 1.08999 * 119.80991 * 4.61861 * 30 23 21 32 32 H 1.09002 * 109.46991 * 299.99912 * 1 2 3 33 33 H 1.09002 * 109.47295 * 59.99651 * 1 2 3 34 34 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47105 * 294.99961 * 4 2 1 36 36 H 1.08995 * 109.47681 * 54.99920 * 4 2 1 37 37 H 1.08998 * 109.47183 * 299.99488 * 5 4 2 38 38 H 1.08999 * 109.47085 * 60.00205 * 5 4 2 39 39 H 1.09003 * 109.47607 * 300.00227 * 6 5 4 40 40 H 1.09004 * 109.47012 * 60.00257 * 6 5 4 41 41 H 1.00901 * 110.99888 * 56.04779 * 7 6 5 42 42 H 1.09001 * 109.46974 * 300.00238 * 8 7 6 43 43 H 1.08998 * 109.46782 * 59.99877 * 8 7 6 44 44 H 0.96998 * 120.00025 * 359.97438 * 11 9 8 45 45 H 0.96999 * 120.00300 * 179.97438 * 15 14 12 46 46 H 0.97000 * 120.00436 * 94.99570 * 20 2 1 47 47 H 1.09000 * 110.36928 * 32.01183 * 27 25 23 48 48 H 1.09001 * 110.37052 * 154.34165 * 27 25 23 49 49 H 1.08998 * 110.37619 * 200.65555 * 29 28 27 50 50 H 1.09006 * 110.36783 * 78.31994 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 6 4.0748 -1.3347 -2.5629 7 7 5.5388 -1.2306 -2.6251 8 6 6.0651 -1.9132 -3.8147 9 6 7.5664 -1.7857 -3.8439 10 8 8.1414 -1.1850 -2.9610 11 7 8.2702 -2.3393 -4.8512 12 6 9.6360 -2.2239 -4.8776 13 1 10.1480 -1.6889 -4.0913 14 6 10.3616 -2.7942 -5.9164 15 7 9.7386 -3.4438 -6.8738 16 14 12.2225 -2.6363 -5.9526 17 1 12.7958 -3.2571 -4.7315 18 1 12.7546 -3.3268 -7.1548 19 1 12.5966 -1.2000 -5.9999 20 7 2.0184 -0.6907 1.1960 21 6 2.1471 -0.0185 2.3571 22 8 1.8590 1.1584 2.4115 23 6 2.6490 -0.7291 3.5875 24 1 3.3969 -1.5022 3.4110 25 6 2.7730 0.0905 4.8736 26 1 2.5754 1.1622 4.8543 27 6 3.6600 -0.4677 6.0085 28 8 2.7870 -1.3314 6.7684 29 6 1.9919 -2.0291 5.7852 30 6 1.6501 -0.9609 4.7230 31 1 0.6045 -0.6832 4.5900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.7516 -1.7714 -1.2059 36 1 1.6054 -0.2615 -2.1370 37 1 3.8532 0.4371 -1.3574 38 1 3.9994 -1.0728 -0.4262 39 1 3.7865 -2.3850 -2.5190 40 1 3.6402 -0.8754 -3.4507 41 1 5.9630 -1.5911 -1.7836 42 1 5.7909 -2.9675 -3.7797 43 1 5.6439 -1.4578 -4.7110 44 1 7.8104 -2.8201 -5.5572 45 1 10.2450 -3.8416 -7.5991 46 1 2.2491 -1.6319 1.1524 47 1 4.4916 -1.0379 5.5945 48 1 4.0301 0.3440 6.6349 49 1 1.0805 -2.4171 6.2401 50 1 2.5676 -2.8389 5.3369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725398799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:25 Heat of formation + Delta-G solvation = -98.166230 kcal Electronic energy + Delta-G solvation = -28280.910144 eV Core-core repulsion = 24115.576645 eV Total energy + Delta-G solvation = -4165.333498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19399 -39.62396 -38.33405 -37.19364 -35.58276 -34.95378 -33.90130 -32.59712 -31.24805 -30.64966 -29.22260 -27.35946 -26.67228 -25.14235 -23.66991 -22.96794 -21.53604 -21.21655 -21.02382 -20.60895 -19.21953 -18.10718 -17.88704 -16.92500 -16.39278 -16.14234 -15.89885 -15.65628 -15.59946 -15.17160 -14.72547 -14.62785 -14.49807 -14.26383 -13.93277 -13.67734 -13.47206 -13.32472 -13.21883 -13.03956 -12.66478 -12.51780 -12.29514 -12.06223 -11.95001 -11.84892 -11.57881 -11.46644 -11.36746 -11.03916 -10.95002 -10.88802 -10.82428 -10.79486 -10.44858 -10.22039 -10.19618 -10.13593 -9.50901 -9.44057 -8.47200 -8.06534 -7.96724 -6.42433 -3.83332 1.99705 2.64899 3.07653 3.19627 3.25249 3.29795 3.51856 3.89956 3.93623 4.02322 4.03441 4.22425 4.31659 4.36799 4.51733 4.58719 4.66308 4.72595 4.76703 4.84639 5.03279 5.10575 5.14381 5.15555 5.22541 5.24151 5.25627 5.27039 5.39621 5.44490 5.46546 5.51790 5.62360 5.65518 5.70482 5.78068 5.86110 5.97322 6.02751 6.13984 6.19320 6.20529 6.27348 7.11833 7.22041 7.54252 7.65446 7.85375 8.05413 8.60595 9.17022 9.53441 10.05075 10.75222 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.001664 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.792052 B =16819.153041 C =18436.317800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.440 3.560 10 O -0.584 6.584 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.102 0.898 14 C 0.022 3.978 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 N -0.717 5.717 21 C 0.546 3.454 22 O -0.536 6.536 23 C -0.151 4.151 24 H 0.126 0.874 25 C -0.157 4.157 26 H 0.136 0.864 27 C 0.072 3.928 28 O -0.371 6.371 29 C 0.074 3.926 30 C -0.169 4.169 31 H 0.127 0.873 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.348 0.652 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.401 0.599 47 H 0.067 0.933 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.756 0.369 18.303 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.225 3.775 10 O -0.468 6.468 11 N -0.200 5.200 12 C -0.430 4.430 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.368 5.368 21 C 0.332 3.668 22 O -0.412 6.412 23 C -0.172 4.172 24 H 0.143 0.857 25 C -0.176 4.176 26 H 0.153 0.847 27 C -0.005 4.005 28 O -0.290 6.290 29 C -0.003 4.003 30 C -0.188 4.188 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.167 0.833 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.236 0.764 47 H 0.086 0.914 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.504 2.126 18.683 28.566 hybrid contribution 0.623 -1.680 -0.805 1.964 sum -20.881 0.446 17.878 27.492 Atomic orbital electron populations 1.22174 0.95198 1.02111 1.02636 1.21044 0.93848 0.97841 0.83570 0.89103 1.21879 0.96381 1.00967 0.97139 1.21560 0.93884 1.02325 0.97735 1.21974 0.88819 0.97777 0.98461 1.60050 1.03650 1.61139 1.05448 1.21667 0.95224 0.96605 0.94673 1.19826 0.88051 0.84762 0.84823 1.90519 1.71142 1.45950 1.39157 1.41860 1.07401 1.48371 1.22401 1.19660 0.81525 1.32852 1.08941 0.87977 1.25264 1.00729 0.96570 0.95390 1.69600 1.36803 1.35867 1.12075 0.85908 0.82076 0.78621 0.77557 1.19923 1.20975 1.19866 1.46005 1.67240 1.14072 1.09500 1.19451 0.77167 0.86631 0.83598 1.90719 1.49818 1.15769 1.84914 1.22425 1.02803 1.02923 0.89057 0.85652 1.24220 0.99318 0.99299 0.94787 0.84652 1.22982 0.91989 0.93866 0.91631 1.89209 1.52563 1.57324 1.29858 1.22945 0.96147 0.93087 0.88122 1.24203 0.96952 0.99658 0.98021 0.85502 0.92239 0.91390 0.92452 0.91363 0.89959 0.90721 0.92050 0.95756 0.91155 0.83303 0.93987 0.89642 0.77461 0.91822 0.76419 0.91440 0.87857 0.88054 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 2 C 0.14 1.08 2.57 -67.93 -0.17 0.91 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 4 C -0.13 -0.86 4.75 -26.73 -0.13 -0.98 16 5 C -0.12 -1.11 5.36 -26.73 -0.14 -1.25 16 6 C 0.06 0.68 5.69 -3.83 -0.02 0.66 16 7 N -0.67 -10.74 6.13 -115.06 -0.70 -11.45 16 8 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 9 C 0.44 10.46 7.82 -10.98 -0.09 10.38 16 10 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 11 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 12 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 13 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 14 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 16 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 N -0.72 -5.16 4.53 -53.81 -0.24 -5.40 16 21 C 0.55 5.11 7.57 -10.98 -0.08 5.02 16 22 O -0.54 -7.08 16.00 5.55 0.09 -6.99 16 23 C -0.15 -1.07 5.74 -91.77 -0.53 -1.60 16 24 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 25 C -0.16 -1.21 6.65 -89.02 -0.59 -1.80 16 26 H 0.14 1.20 7.81 -51.93 -0.41 0.79 16 27 C 0.07 0.49 7.44 37.93 0.28 0.78 16 28 O -0.37 -3.15 11.65 -35.23 -0.41 -3.56 16 29 C 0.07 0.44 7.44 37.93 0.28 0.72 16 30 C -0.17 -1.11 6.91 -89.03 -0.62 -1.73 16 31 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 39 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.73 8.43 -39.29 -0.33 5.39 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.40 2.00 8.60 -40.82 -0.35 1.64 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 415.88 15.07 6.27 6.27 Total: -1.00 -34.34 415.88 -9.48 -43.82 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -8.48 Total: 12.24 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -1.72 Total: 3.14 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.28 Total: -55.04 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.23 Total: -26.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.34 -9.48 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725398799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.344 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds