Wall clock time and date at job start Tue Mar 31 2020 22:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47237 * 2 1 4 4 C 1.53002 * 109.47018 * 240.00895 * 2 1 3 5 5 C 1.53004 * 109.47098 * 174.99974 * 4 2 1 6 6 C 1.53001 * 109.46987 * 179.97438 * 5 4 2 7 7 N 1.46895 * 109.47256 * 179.97438 * 6 5 4 8 8 C 1.46903 * 111.00386 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47043 * 180.02562 * 8 7 6 10 10 O 1.21284 * 120.00246 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99518 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99878 * 180.02562 * 11 9 8 13 13 H 1.08005 * 119.99810 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00158 * 180.02562 * 12 11 9 15 15 N 1.31403 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46999 * 60.00105 * 16 14 12 18 18 H 1.48495 * 109.47293 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47568 * 300.00654 * 16 14 12 20 20 N 1.46495 * 109.47586 * 120.00782 * 2 1 3 21 21 C 1.34784 * 119.99801 * 275.00230 * 20 2 1 22 22 O 1.21286 * 119.99663 * 359.97438 * 21 20 2 23 23 C 1.50696 * 119.99813 * 179.97438 * 21 20 2 24 24 H 1.08999 * 115.51470 * 34.63048 * 23 21 20 25 25 C 1.53006 * 117.43057 * 179.97438 * 23 21 20 26 26 H 1.09000 * 119.80899 * 355.31377 * 25 23 21 27 27 C 1.54476 * 118.06652 * 198.02788 * 25 23 21 28 28 O 1.44417 * 104.80699 * 273.17886 * 27 25 23 29 29 C 1.44423 * 105.27899 * 40.50531 * 28 27 25 30 30 C 1.52999 * 117.38678 * 249.32887 * 23 21 20 31 31 H 1.08999 * 119.80991 * 4.61861 * 30 23 21 32 32 H 1.09002 * 109.46991 * 299.99912 * 1 2 3 33 33 H 1.09002 * 109.47295 * 59.99651 * 1 2 3 34 34 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.47105 * 294.99961 * 4 2 1 36 36 H 1.08995 * 109.47681 * 54.99920 * 4 2 1 37 37 H 1.08998 * 109.47183 * 299.99488 * 5 4 2 38 38 H 1.08999 * 109.47085 * 60.00205 * 5 4 2 39 39 H 1.09003 * 109.47607 * 300.00227 * 6 5 4 40 40 H 1.09004 * 109.47012 * 60.00257 * 6 5 4 41 41 H 1.00901 * 110.99888 * 56.04779 * 7 6 5 42 42 H 1.09001 * 109.46974 * 300.00238 * 8 7 6 43 43 H 1.08998 * 109.46782 * 59.99877 * 8 7 6 44 44 H 0.96998 * 120.00025 * 359.97438 * 11 9 8 45 45 H 0.96999 * 120.00300 * 179.97438 * 15 14 12 46 46 H 0.97000 * 120.00436 * 94.99570 * 20 2 1 47 47 H 1.09000 * 110.36928 * 32.01183 * 27 25 23 48 48 H 1.09001 * 110.37052 * 154.34165 * 27 25 23 49 49 H 1.08998 * 110.37619 * 200.65555 * 29 28 27 50 50 H 1.09006 * 110.36783 * 78.31994 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3138 6 6 4.0748 -1.3347 -2.5629 7 7 5.5388 -1.2306 -2.6251 8 6 6.0651 -1.9132 -3.8147 9 6 7.5664 -1.7857 -3.8439 10 8 8.1414 -1.1850 -2.9610 11 7 8.2702 -2.3393 -4.8512 12 6 9.6360 -2.2239 -4.8776 13 1 10.1480 -1.6889 -4.0913 14 6 10.3616 -2.7942 -5.9164 15 7 9.7386 -3.4438 -6.8738 16 14 12.2225 -2.6363 -5.9526 17 1 12.7958 -3.2571 -4.7315 18 1 12.7546 -3.3268 -7.1548 19 1 12.5966 -1.2000 -5.9999 20 7 2.0184 -0.6907 1.1960 21 6 2.1471 -0.0185 2.3571 22 8 1.8590 1.1584 2.4115 23 6 2.6490 -0.7291 3.5875 24 1 3.3969 -1.5022 3.4110 25 6 2.7730 0.0905 4.8736 26 1 2.5754 1.1622 4.8543 27 6 3.6600 -0.4677 6.0085 28 8 2.7870 -1.3314 6.7684 29 6 1.9919 -2.0291 5.7852 30 6 1.6501 -0.9609 4.7230 31 1 0.6045 -0.6832 4.5900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.7516 -1.7714 -1.2059 36 1 1.6054 -0.2615 -2.1370 37 1 3.8532 0.4371 -1.3574 38 1 3.9994 -1.0728 -0.4262 39 1 3.7865 -2.3850 -2.5190 40 1 3.6402 -0.8754 -3.4507 41 1 5.9630 -1.5911 -1.7836 42 1 5.7909 -2.9675 -3.7797 43 1 5.6439 -1.4578 -4.7110 44 1 7.8104 -2.8201 -5.5572 45 1 10.2450 -3.8416 -7.5991 46 1 2.2491 -1.6319 1.1524 47 1 4.4916 -1.0379 5.5945 48 1 4.0301 0.3440 6.6349 49 1 1.0805 -2.4171 6.2401 50 1 2.5676 -2.8389 5.3369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725398799.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:25 Heat of formation + Delta-G solvation = -124.446299 kcal Electronic energy + Delta-G solvation = -28282.049733 eV Core-core repulsion = 24115.576645 eV Total energy + Delta-G solvation = -4166.473088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80301 -40.30215 -40.14090 -38.05130 -36.69492 -35.86142 -35.58334 -33.52969 -33.20675 -31.47729 -29.71345 -28.65415 -27.27769 -26.63525 -24.92763 -23.66847 -22.39387 -21.79279 -21.65144 -21.27242 -21.02745 -19.90566 -18.73190 -17.86608 -17.55342 -17.07277 -16.89649 -16.55023 -16.39192 -16.16012 -16.01353 -15.83597 -15.60190 -15.32687 -15.15633 -15.02055 -14.36268 -14.11327 -14.06816 -13.99077 -13.59849 -13.49522 -13.27229 -13.10314 -12.98019 -12.87256 -12.76530 -12.59118 -12.44341 -12.40129 -12.15617 -12.09593 -11.70554 -11.58933 -11.50764 -11.46632 -11.36593 -10.91363 -10.68098 -10.36187 -10.12056 -10.02554 -9.29704 -8.47149 -5.96103 1.30862 1.39613 1.41713 1.52610 2.03582 2.04479 2.28995 2.47917 2.92667 3.02386 3.19982 3.40018 3.46714 3.50505 3.73070 3.80941 3.85242 4.05534 4.06035 4.09471 4.10355 4.31082 4.35945 4.37955 4.43158 4.50399 4.57075 4.65000 4.66270 4.70314 4.73270 4.78331 4.82762 4.86243 4.91974 4.94848 5.02621 5.08452 5.24602 5.28971 5.39707 5.41334 5.55419 5.69707 5.90543 6.13190 6.43331 6.51110 6.59639 7.11832 7.19651 7.55434 8.10953 8.69881 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.001664 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.792052 B =16819.153041 C =18436.317800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.112 4.112 5 C -0.111 4.111 6 C 0.061 3.939 7 N -0.691 5.691 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.626 6.626 11 N -0.572 5.572 12 C -0.336 4.336 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.271 1.271 18 H -0.270 1.270 19 H -0.273 1.273 20 N -0.704 5.704 21 C 0.540 3.460 22 O -0.582 6.582 23 C -0.145 4.145 24 H 0.148 0.852 25 C -0.175 4.175 26 H 0.116 0.884 27 C 0.074 3.926 28 O -0.393 6.393 29 C 0.073 3.927 30 C -0.158 4.158 31 H 0.125 0.875 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.343 0.657 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.415 0.585 47 H 0.079 0.921 48 H 0.108 0.892 49 H 0.116 0.884 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.616 -1.578 17.803 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.066 4.066 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.466 4.466 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.196 1.196 18 H -0.194 1.194 19 H -0.199 1.199 20 N -0.356 5.356 21 C 0.327 3.673 22 O -0.463 6.463 23 C -0.166 4.166 24 H 0.166 0.834 25 C -0.194 4.194 26 H 0.134 0.866 27 C -0.002 4.002 28 O -0.312 6.312 29 C -0.003 4.003 30 C -0.177 4.177 31 H 0.143 0.857 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.161 0.839 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.253 0.747 47 H 0.097 0.903 48 H 0.126 0.874 49 H 0.134 0.866 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.398 0.133 18.153 28.831 hybrid contribution 0.833 -1.041 -0.646 1.481 sum -21.566 -0.908 17.507 27.792 Atomic orbital electron populations 1.22109 0.94241 1.03001 1.02111 1.21002 0.94524 0.96656 0.84143 0.91975 1.21786 0.94120 1.02306 0.96808 1.21485 0.95781 1.00554 0.97055 1.22071 0.85834 0.99349 0.99461 1.60061 1.06370 1.61346 1.04549 1.21525 0.90272 0.98625 0.96217 1.20958 0.90687 0.82812 0.83276 1.90486 1.72862 1.47379 1.40492 1.41932 1.06863 1.49000 1.23177 1.19631 0.83093 1.34446 1.09411 0.90407 1.26041 1.04949 0.95672 0.94585 1.69657 1.38369 1.35707 1.12239 0.84988 0.76757 0.78559 0.78029 1.19626 1.19395 1.19856 1.45943 1.66181 1.14638 1.08808 1.19872 0.76564 0.86192 0.84657 1.90700 1.52002 1.17863 1.85699 1.22429 1.03407 1.02877 0.87887 0.83405 1.24189 1.00813 0.98653 0.95747 0.86614 1.23029 0.91865 0.94064 0.91278 1.89185 1.53146 1.57802 1.31109 1.23123 0.96833 0.92849 0.87528 1.24231 0.96543 0.99299 0.97587 0.85725 0.94310 0.90429 0.90755 0.89004 0.88999 0.93140 0.91956 0.93568 0.90563 0.83889 0.91359 0.87944 0.76908 0.91250 0.74747 0.90310 0.87388 0.86606 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 71.98 0.68 -1.25 16 2 C 0.14 2.02 2.57 44.99 0.12 2.13 16 3 H 0.06 1.28 7.58 -2.38 -0.02 1.26 16 4 C -0.11 -1.24 4.75 30.60 0.15 -1.09 16 5 C -0.11 -1.91 5.36 30.60 0.16 -1.75 16 6 C 0.06 1.23 5.69 86.30 0.49 1.73 16 7 N -0.69 -21.14 6.13 -517.92 -3.17 -24.31 16 8 C 0.07 2.21 6.17 85.56 0.53 2.74 16 9 C 0.44 20.73 7.82 87.66 0.69 21.41 16 10 O -0.63 -35.01 15.78 -3.04 -0.05 -35.05 16 11 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 12 C -0.34 -19.15 9.68 84.04 0.81 -18.33 16 13 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 16 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 N -0.70 -9.28 4.53 -442.53 -2.00 -11.29 16 21 C 0.54 10.08 7.57 87.65 0.66 10.74 16 22 O -0.58 -16.19 16.00 -3.05 -0.05 -16.24 16 23 C -0.15 -1.93 5.74 -11.54 -0.07 -2.00 16 24 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 25 C -0.18 -2.72 6.65 -9.76 -0.06 -2.79 16 26 H 0.12 2.25 7.81 -2.39 -0.02 2.23 16 27 C 0.07 0.98 7.44 72.48 0.54 1.52 16 28 O -0.39 -6.29 11.65 -148.98 -1.74 -8.03 16 29 C 0.07 0.74 7.44 72.48 0.54 1.28 16 30 C -0.16 -1.94 6.91 -9.77 -0.07 -2.01 16 31 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.34 10.99 8.43 -89.69 -0.76 10.23 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.40 19.19 7.90 -92.71 -0.73 18.45 16 45 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 46 H 0.42 3.11 8.60 -92.71 -0.80 2.31 16 47 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -76.34 415.88 -2.01 -78.35 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -1.32 Total: 39.58 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.64 Total: 12.13 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -6.52 Total: -115.58 kcal Atomic # 8 Polarization: -57.49 SS G_CDS: -1.83 Total: -59.32 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -76.34 -2.01 -78.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725398799.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.096 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds