Wall clock time and date at job start Tue Mar 31 2020 23:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46735 * 2 1 4 4 C 1.50699 * 109.47430 * 119.99497 * 2 1 3 5 5 O 1.21284 * 119.99805 * 119.99610 * 4 2 1 6 6 N 1.34772 * 120.00273 * 300.00554 * 4 2 1 7 7 C 1.46494 * 120.00303 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.47453 * 175.58765 * 7 6 4 9 9 N 1.46899 * 115.54612 * 279.61630 * 8 7 6 10 10 C 1.46902 * 110.99994 * 294.62226 * 9 8 7 11 11 C 1.50706 * 109.47066 * 179.59583 * 10 9 8 12 12 O 1.21285 * 119.99952 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99769 * 179.97438 * 11 10 9 14 14 C 1.37097 * 120.00215 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99410 * 0.02562 * 14 13 11 16 16 C 1.38945 * 120.00752 * 180.02562 * 14 13 11 17 17 N 1.31417 * 119.99626 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00602 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46679 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47398 * 119.99635 * 18 16 14 21 21 H 1.48499 * 109.47113 * 239.99928 * 18 16 14 22 22 C 1.53001 * 117.49995 * 133.90494 * 8 7 6 23 23 C 1.52997 * 117.49886 * 65.28300 * 8 7 6 24 24 C 1.52999 * 109.47067 * 239.99880 * 2 1 3 25 25 H 1.08996 * 110.27283 * 184.35633 * 24 2 1 26 26 C 1.54948 * 110.30932 * 62.16213 * 24 2 1 27 27 C 1.55301 * 100.94197 * 204.63839 * 26 24 2 28 28 C 1.54382 * 102.25260 * 34.13568 * 27 26 24 29 29 O 1.43233 * 107.58796 * 338.64219 * 28 27 26 30 30 H 1.09006 * 109.47041 * 300.00214 * 1 2 3 31 31 H 1.08995 * 109.47415 * 60.00277 * 1 2 3 32 32 H 1.09004 * 109.47172 * 180.02562 * 1 2 3 33 33 H 0.97003 * 119.99907 * 359.97438 * 6 4 2 34 34 H 1.09003 * 109.47388 * 295.58765 * 7 6 4 35 35 H 1.08994 * 109.47182 * 55.58793 * 7 6 4 36 36 H 1.00902 * 111.00240 * 170.67081 * 9 8 7 37 37 H 1.08996 * 109.47274 * 299.59833 * 10 9 8 38 38 H 1.09000 * 109.46724 * 59.59851 * 10 9 8 39 39 H 0.97003 * 120.00160 * 0.02562 * 13 11 10 40 40 H 0.96996 * 120.00279 * 179.97438 * 17 16 14 41 41 H 1.08994 * 117.49784 * 0.02562 * 22 8 7 42 42 H 1.08994 * 117.49238 * 145.01999 * 22 8 7 43 43 H 1.09000 * 117.49769 * 214.98318 * 23 8 7 44 44 H 1.08997 * 117.50146 * 0.02562 * 23 8 7 45 45 H 1.08996 * 111.12745 * 322.56043 * 26 24 2 46 46 H 1.09004 * 111.12205 * 86.67950 * 26 24 2 47 47 H 1.09002 * 110.84998 * 275.94603 * 27 26 24 48 48 H 1.09001 * 110.84910 * 152.32415 * 27 26 24 49 49 H 1.08996 * 109.83170 * 219.12957 * 28 27 26 50 50 H 1.09000 * 109.82897 * 98.15423 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2498 2.4546 7 6 2.1947 -0.9406 3.6507 8 6 1.7774 -0.1581 4.8976 9 7 2.6165 1.0015 5.2280 10 6 3.9759 0.5808 5.5929 11 6 4.8081 1.7953 5.9150 12 8 4.3170 2.9022 5.8476 13 7 6.0978 1.6512 6.2788 14 6 6.8548 2.7559 6.5723 15 1 6.4175 3.7416 6.5123 16 6 8.1845 2.6075 6.9469 17 7 8.7165 1.4080 7.0204 18 14 9.2157 4.1126 7.3475 19 1 8.3882 5.3356 7.1905 20 1 9.7032 4.0205 8.7472 21 1 10.3757 4.1783 6.4227 22 6 1.1764 -0.9502 6.0604 23 6 0.2811 -0.0565 5.1999 24 6 2.0400 -0.7213 -1.2492 25 1 3.1271 -0.7967 -1.2245 26 6 1.5795 0.0249 -2.5267 27 6 1.6070 -1.1276 -3.5673 28 6 1.1892 -2.3466 -2.7172 29 8 1.4515 -2.0281 -1.3456 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.1493 0.5390 2.5435 34 1 1.7680 -1.9428 3.6911 35 1 3.2818 -1.0099 3.6122 36 1 2.1989 1.5523 5.9631 37 1 3.9325 -0.0716 6.4650 38 1 4.4259 0.0428 4.7586 39 1 6.4904 0.7658 6.3331 40 1 9.6449 1.3043 7.2816 41 1 1.0786 -2.0287 5.9374 42 1 1.4036 -0.6109 7.0710 43 1 -0.0807 0.8707 5.6443 44 1 -0.4061 -0.5474 4.5108 45 1 0.5717 0.4227 -2.4076 46 1 2.2816 0.8143 -2.7952 47 1 2.6105 -1.2618 -3.9711 48 1 0.8873 -0.9466 -4.3658 49 1 1.7712 -3.2198 -3.0118 50 1 0.1263 -2.5459 -2.8538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733255194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:20 Heat of formation + Delta-G solvation = -122.621405 kcal Electronic energy + Delta-G solvation = -29706.706926 eV Core-core repulsion = 25540.312972 eV Total energy + Delta-G solvation = -4166.393954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.35396 -40.48135 -39.87762 -39.08093 -36.04285 -35.30068 -34.58783 -33.92690 -33.21708 -32.86747 -29.25592 -28.30783 -27.98495 -25.90356 -25.61454 -23.46555 -22.81296 -22.15508 -21.19469 -20.95715 -20.32871 -19.92915 -18.20306 -17.89681 -17.72986 -17.26637 -17.02490 -16.58541 -16.43860 -16.28048 -16.03405 -15.80675 -15.46102 -15.43543 -14.84146 -14.69610 -14.65115 -14.17016 -14.15311 -13.79777 -13.58876 -13.52207 -13.11391 -12.96578 -12.87746 -12.80530 -12.68059 -12.45759 -12.42758 -12.40959 -12.12248 -12.04470 -11.95288 -11.84231 -11.54628 -11.53186 -11.22018 -10.68390 -10.39463 -10.34702 -10.04453 -10.01807 -9.28769 -8.48660 -5.97980 1.35349 1.40573 1.55189 1.72752 2.01032 2.12037 2.26777 2.64959 2.91419 3.03442 3.18413 3.41676 3.54178 3.60330 3.69924 3.78162 3.87837 4.00423 4.02558 4.09982 4.17645 4.25256 4.40252 4.41989 4.45736 4.49098 4.58566 4.60372 4.71006 4.75356 4.79962 4.83623 4.86034 4.92533 4.97892 4.99057 5.00865 5.12592 5.20921 5.23129 5.38984 5.42688 5.48567 5.83383 6.04123 6.19440 6.33296 6.56243 6.63552 7.09580 7.33403 7.52509 8.06708 8.69088 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.002304 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.346623 B =12151.261109 C =13585.831236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 H 0.127 0.873 4 C 0.510 3.490 5 O -0.582 6.582 6 N -0.708 5.708 7 C 0.171 3.829 8 C 0.022 3.978 9 N -0.635 5.635 10 C 0.067 3.933 11 C 0.440 3.560 12 O -0.620 6.620 13 N -0.574 5.574 14 C -0.332 4.332 15 H 0.081 0.919 16 C -0.015 4.015 17 N -0.922 5.922 18 Si 0.995 3.005 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.200 4.200 23 C -0.141 4.141 24 C 0.094 3.906 25 H 0.048 0.952 26 C -0.147 4.147 27 C -0.150 4.150 28 C 0.039 3.961 29 O -0.394 6.394 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.352 0.648 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.278 0.722 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.059 0.941 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.609 -6.153 -16.153 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.129 4.129 3 H 0.145 0.855 4 C 0.298 3.702 5 O -0.461 6.461 6 N -0.360 5.360 7 C 0.046 3.954 8 C -0.071 4.071 9 N -0.266 5.266 10 C -0.065 4.065 11 C 0.227 3.773 12 O -0.506 6.506 13 N -0.211 5.211 14 C -0.462 4.462 15 H 0.099 0.901 16 C -0.215 4.215 17 N -0.563 5.563 18 Si 0.819 3.181 19 H -0.196 1.196 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.240 4.240 23 C -0.179 4.179 24 C 0.036 3.964 25 H 0.066 0.934 26 C -0.185 4.185 27 C -0.187 4.187 28 C -0.038 4.038 29 O -0.314 6.314 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.250 0.750 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.172 0.828 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.138 0.862 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.123 0.877 49 H 0.078 0.922 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.106 -6.166 -16.693 26.850 hybrid contribution 1.061 0.010 1.264 1.650 sum -19.045 -6.156 -15.430 25.272 Atomic orbital electron populations 1.21726 0.90350 1.02805 1.04194 1.21569 1.00001 1.00673 0.90686 0.85507 1.21129 0.79353 0.84174 0.85587 1.90700 1.39737 1.28322 1.87380 1.45820 1.53407 1.32200 1.04562 1.20572 0.98666 0.94200 0.81925 1.21769 0.94817 0.94290 0.96209 1.59803 1.00415 1.18670 1.47703 1.21456 0.90186 0.93861 1.00989 1.20746 0.83006 0.91221 0.82319 1.90482 1.72709 1.28592 1.58822 1.41956 1.09570 1.09508 1.60022 1.19714 0.93390 0.88468 1.44600 0.90102 1.26100 0.97767 1.01025 0.96609 1.69691 1.15424 1.23104 1.48047 0.84839 0.77669 0.77391 0.78247 1.19569 1.19498 1.19703 1.23672 1.04690 0.99683 0.95952 1.23243 0.90210 1.02088 1.02344 1.22735 0.96217 0.82821 0.94607 0.93434 1.23417 1.04171 0.98412 0.92462 1.23109 1.03319 0.93567 0.98739 1.23292 1.01104 0.98151 0.81216 1.88502 1.82229 1.34404 1.26220 0.90587 0.89238 0.92933 0.74979 0.90631 0.93330 0.82821 0.91540 0.89114 0.77133 0.91289 0.87201 0.88612 0.87483 0.86250 0.88027 0.88567 0.90696 0.87734 0.92228 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.67 71.98 0.62 -1.12 16 2 C -0.11 -2.02 2.65 -11.54 -0.03 -2.05 16 3 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.51 13.73 7.06 87.66 0.62 14.35 16 5 O -0.58 -21.35 15.53 8.30 0.13 -21.22 16 6 N -0.71 -16.27 5.41 -463.07 -2.50 -18.77 16 7 C 0.17 4.29 5.68 86.38 0.49 4.78 16 8 C 0.02 0.49 1.81 3.53 0.01 0.49 16 9 N -0.63 -19.29 6.29 -474.13 -2.98 -22.27 16 10 C 0.07 2.39 6.01 85.56 0.51 2.90 16 11 C 0.44 21.21 7.82 87.66 0.69 21.89 16 12 O -0.62 -34.14 15.79 -3.05 -0.05 -34.19 16 13 N -0.57 -30.12 5.29 -306.99 -1.62 -31.74 16 14 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 15 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 16 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 17 N -0.92 -50.77 13.05 21.66 0.28 -50.49 16 18 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 C -0.20 -3.67 10.07 30.59 0.31 -3.36 16 23 C -0.14 -2.27 9.89 30.59 0.30 -1.97 16 24 C 0.09 1.94 2.63 31.26 0.08 2.03 16 25 H 0.05 1.23 8.00 -2.39 -0.02 1.21 16 26 C -0.15 -1.77 6.47 32.05 0.21 -1.56 16 27 C -0.15 -1.70 7.02 31.85 0.22 -1.48 16 28 C 0.04 0.64 7.79 72.45 0.56 1.20 16 29 O -0.39 -9.70 9.53 -137.63 -1.31 -11.01 16 30 H 0.08 0.76 7.57 -2.38 -0.02 0.74 16 31 H 0.09 0.77 6.22 -2.39 -0.01 0.75 16 32 H 0.05 0.89 7.57 -2.38 -0.02 0.87 16 33 H 0.41 7.61 7.83 -92.71 -0.73 6.88 16 34 H 0.08 1.80 7.94 -2.39 -0.02 1.78 16 35 H 0.05 1.50 6.52 -2.39 -0.02 1.49 16 36 H 0.35 10.90 8.32 -89.69 -0.75 10.15 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 3.20 6.62 -2.39 -0.02 3.19 16 39 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 40 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.11 1.78 8.08 -2.39 -0.02 1.76 16 42 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 0.87 6.01 -2.39 -0.01 0.86 16 46 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -77.12 405.95 -1.38 -78.49 By element: Atomic # 1 Polarization: 49.58 SS G_CDS: -1.22 Total: 48.36 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 5.88 Total: 17.44 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -6.83 Total: -123.27 kcal Atomic # 8 Polarization: -65.19 SS G_CDS: -1.23 Total: -66.42 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -77.12 -1.38 -78.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733255194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.129 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds