Wall clock time and date at job start Tue Mar 31 2020 22:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47090 * 2 1 4 4 C 1.50694 * 109.47191 * 120.00509 * 2 1 3 5 5 O 1.21285 * 119.99994 * 119.99905 * 4 2 1 6 6 N 1.34781 * 120.00159 * 299.99745 * 4 2 1 7 7 C 1.46495 * 120.00277 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47301 * 175.13205 * 7 6 4 9 9 H 1.08997 * 109.54228 * 184.87969 * 8 7 6 10 10 C 1.53097 * 109.50712 * 64.77161 * 8 7 6 11 11 O 1.43020 * 109.26067 * 183.21833 * 10 8 7 12 12 C 1.43011 * 113.73712 * 58.66562 * 11 10 8 13 13 C 1.53091 * 109.26311 * 301.33519 * 12 11 10 14 14 N 1.47011 * 109.26150 * 56.84511 * 13 12 11 15 15 C 1.46899 * 111.00502 * 177.60990 * 14 13 12 16 16 C 1.50702 * 109.46911 * 293.23430 * 15 14 13 17 17 O 1.21288 * 120.00036 * 354.92166 * 16 15 14 18 18 N 1.34780 * 119.99560 * 174.91551 * 16 15 14 19 19 C 1.37104 * 119.99285 * 179.72432 * 18 16 15 20 20 H 1.07988 * 120.00408 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99261 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00410 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99567 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46867 * 60.00276 * 23 21 19 25 25 H 1.48494 * 109.46638 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47061 * 300.00398 * 23 21 19 27 27 C 1.53005 * 109.46701 * 240.00543 * 2 1 3 28 28 C 1.52999 * 117.49712 * 128.62349 * 27 2 1 29 29 C 1.52994 * 117.50162 * 60.00096 * 27 2 1 30 30 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46893 * 299.99519 * 1 2 3 32 32 H 1.09005 * 109.47399 * 59.99199 * 1 2 3 33 33 H 0.97003 * 119.99801 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.46903 * 55.12706 * 7 6 4 35 35 H 1.09002 * 109.46881 * 295.13716 * 7 6 4 36 36 H 1.08999 * 109.50655 * 63.28334 * 10 8 7 37 37 H 1.09004 * 109.54013 * 303.17491 * 10 8 7 38 38 H 1.08998 * 109.50342 * 181.39240 * 12 11 10 39 39 H 1.09006 * 109.50311 * 61.26781 * 12 11 10 40 40 H 1.09009 * 109.50673 * 296.91289 * 13 12 11 41 41 H 1.08996 * 109.54749 * 176.80598 * 13 12 11 42 42 H 1.08993 * 109.47623 * 173.23400 * 15 14 13 43 43 H 1.09003 * 109.46848 * 53.23221 * 15 14 13 44 44 H 0.96998 * 120.00371 * 0.02562 * 18 16 15 45 45 H 0.96992 * 119.99964 * 179.97438 * 22 21 19 46 46 H 1.08995 * 115.54636 * 274.32523 * 27 2 1 47 47 H 1.08997 * 117.50098 * 359.97438 * 28 27 2 48 48 H 1.09000 * 117.50181 * 145.01736 * 28 27 2 49 49 H 1.09004 * 117.50220 * 214.98168 * 29 27 2 50 50 H 1.09006 * 117.49967 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 6 1.7880 -0.1522 4.8969 9 1 2.2240 -0.6170 5.7811 10 6 0.2621 -0.1468 5.0220 11 8 -0.1163 0.6536 6.1452 12 6 0.3362 2.0079 6.0657 13 6 1.8627 2.0244 5.9511 14 7 2.2699 1.2320 4.7817 15 6 3.7274 1.2687 4.6023 16 6 4.1532 2.6668 4.2347 17 8 3.3175 3.5243 4.0420 18 7 5.4628 2.9641 4.1203 19 6 5.8500 4.2347 3.7803 20 1 5.1057 4.9972 3.6046 21 6 7.2002 4.5414 3.6628 22 7 8.1059 3.6137 3.8771 23 14 7.7278 6.2727 3.2002 24 1 7.2296 7.2309 4.2194 25 1 9.2101 6.3390 3.1406 26 1 7.1631 6.6242 1.8726 27 6 2.0399 -0.7212 -1.2494 28 6 3.0741 0.0053 -2.1118 29 6 1.6357 -0.1494 -2.6096 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.1489 0.5384 2.5436 34 1 3.2822 -1.0163 3.6078 35 1 1.7632 -1.9401 3.6953 36 1 -0.0949 -1.1667 5.1650 37 1 -0.1766 0.2686 4.1147 38 1 0.0327 2.5463 6.9635 39 1 -0.0998 2.4864 5.1886 40 1 2.3001 1.5943 6.8523 41 1 2.2085 3.0513 5.8332 42 1 4.0131 0.5808 3.8066 43 1 4.2153 0.9726 5.5311 44 1 6.1312 2.2782 4.2741 45 1 9.0483 3.8277 3.7947 46 1 2.1267 -1.8043 -1.1644 47 1 3.3908 0.9971 -1.7893 48 1 3.8415 -0.5999 -2.5943 49 1 1.4567 -0.8563 -3.4198 50 1 1.0060 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733699823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:04 Heat of formation + Delta-G solvation = -86.504567 kcal Electronic energy + Delta-G solvation = -31087.306161 eV Core-core repulsion = 26922.478351 eV Total energy + Delta-G solvation = -4164.827811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.39000 -39.52422 -38.03552 -37.33003 -35.88743 -34.45649 -33.76978 -32.50434 -31.29696 -30.95950 -29.05000 -26.73513 -25.58361 -25.04224 -23.82224 -22.66885 -22.30500 -21.47098 -19.92481 -19.63601 -19.19662 -17.91752 -17.52060 -16.68748 -16.40308 -15.96428 -15.84563 -15.37624 -15.23932 -14.76356 -14.74663 -14.51666 -14.39544 -14.12668 -13.83424 -13.64164 -13.42522 -13.30392 -13.23041 -12.73696 -12.35038 -12.27641 -12.07739 -11.95599 -11.71301 -11.55536 -11.49065 -11.37526 -11.16629 -11.01375 -10.86653 -10.51508 -10.47594 -10.41116 -10.25319 -10.07000 -9.70459 -9.62478 -9.50603 -8.94129 -8.54076 -8.08366 -7.98164 -6.44990 -3.86314 2.75655 3.16700 3.18492 3.23399 3.27006 3.69747 3.78905 3.84032 3.85680 4.17320 4.51857 4.60949 4.63960 4.73020 4.83299 4.95264 4.99577 5.00807 5.17684 5.19356 5.20266 5.29058 5.29686 5.38004 5.40000 5.48754 5.54803 5.58329 5.61517 5.63766 5.74219 5.76259 5.79483 5.86495 5.90917 5.99090 6.04370 6.07361 6.15882 6.22083 6.25391 6.50217 7.03015 7.04511 7.18375 7.51144 7.62329 8.01430 8.33372 8.56890 9.13728 9.49929 10.00813 10.72488 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007362 B = 0.004121 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3802.535729 B = 6792.364139 C = 9564.401054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 H 0.100 0.900 4 C 0.521 3.479 5 O -0.545 6.545 6 N -0.714 5.714 7 C 0.127 3.873 8 C 0.031 3.969 9 H 0.064 0.936 10 C 0.073 3.927 11 O -0.388 6.388 12 C 0.066 3.934 13 C 0.018 3.982 14 N -0.505 5.505 15 C 0.041 3.959 16 C 0.444 3.556 17 O -0.579 6.579 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.900 5.900 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.133 4.133 28 C -0.177 4.177 29 C -0.180 4.180 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.409 0.591 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.273 0.727 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.812 -9.325 -3.138 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 H 0.118 0.882 4 C 0.308 3.692 5 O -0.422 6.422 6 N -0.367 5.367 7 C 0.003 3.997 8 C -0.079 4.079 9 H 0.082 0.918 10 C -0.004 4.004 11 O -0.306 6.306 12 C -0.011 4.011 13 C -0.109 4.109 14 N -0.231 5.231 15 C -0.090 4.090 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.198 5.198 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.541 5.541 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.151 4.151 28 C -0.214 4.214 29 C -0.217 4.217 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.132 0.868 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.974 -9.298 -3.588 17.987 hybrid contribution 1.350 0.567 0.463 1.536 sum -13.624 -8.731 -3.126 16.480 Atomic orbital electron populations 1.21731 0.92719 1.02569 1.02639 1.20857 0.97253 1.00438 0.91787 0.88197 1.20481 0.79830 0.84373 0.84549 1.90672 1.37947 1.26755 1.86875 1.45853 1.53805 1.32255 1.04829 1.21326 1.00327 0.94901 0.83165 1.22657 0.97349 0.90526 0.97329 0.91810 1.22624 0.92064 0.95913 0.89795 1.87960 1.76966 1.22378 1.43298 1.22700 0.93240 0.82758 1.02425 1.22907 0.96012 1.01551 0.90472 1.61812 1.12199 1.08669 1.40391 1.21968 0.87498 0.98439 1.01127 1.19627 0.83400 0.89011 0.85037 1.90483 1.51114 1.49192 1.55584 1.41869 1.05175 1.12109 1.60639 1.19625 0.91921 0.87632 1.43844 0.87968 1.25265 0.95511 0.99632 0.97386 1.69600 1.01648 1.33627 1.49211 0.85930 0.77263 0.81832 0.79267 1.19905 1.20947 1.19887 1.22006 1.03616 0.99883 0.89621 1.23029 0.92374 1.02195 1.03795 1.22963 0.98497 1.03174 0.97048 0.92102 0.92061 0.91397 0.75499 0.90720 0.90992 0.88550 0.92409 0.88613 0.92007 0.94751 0.87096 0.88920 0.93411 0.77529 0.91754 0.86793 0.88591 0.88806 0.88896 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.93 37.16 0.33 -0.88 16 2 C -0.08 -0.93 2.88 -91.77 -0.26 -1.20 16 3 H 0.10 1.18 7.90 -51.93 -0.41 0.77 16 4 C 0.52 7.19 7.15 -10.99 -0.08 7.12 16 5 O -0.55 -9.34 15.64 5.55 0.09 -9.25 16 6 N -0.71 -8.78 5.01 -60.30 -0.30 -9.08 16 7 C 0.13 1.51 4.72 -4.05 -0.02 1.49 16 8 C 0.03 0.36 2.25 -67.60 -0.15 0.21 16 9 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 10 C 0.07 0.78 6.19 37.21 0.23 1.01 16 11 O -0.39 -4.88 10.83 -35.23 -0.38 -5.26 16 12 C 0.07 0.82 7.01 37.20 0.26 1.08 16 13 C 0.02 0.27 5.30 -3.72 -0.02 0.25 16 14 N -0.50 -7.49 3.74 -227.78 -0.85 -8.34 16 15 C 0.04 0.70 5.23 -4.98 -0.03 0.67 16 16 C 0.44 10.00 7.38 -10.98 -0.08 9.92 16 17 O -0.58 -14.57 14.22 5.55 0.08 -14.49 16 18 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 19 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 23 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.13 -1.53 4.76 -90.62 -0.43 -1.96 16 28 C -0.18 -2.00 10.18 -26.73 -0.27 -2.27 16 29 C -0.18 -1.69 9.73 -26.74 -0.26 -1.95 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.49 7.56 -51.93 -0.39 0.09 16 32 H 0.07 0.52 7.29 -51.93 -0.38 0.14 16 33 H 0.41 4.81 6.66 -40.82 -0.27 4.54 16 34 H 0.07 1.01 6.43 -51.93 -0.33 0.68 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.59 7.00 -51.93 -0.36 0.22 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.11 1.99 6.10 -51.93 -0.32 1.67 16 42 H 0.09 1.55 5.85 -51.93 -0.30 1.25 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.11 1.45 7.47 -51.93 -0.39 1.06 16 47 H 0.10 1.13 8.05 -51.93 -0.42 0.71 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 0.80 7.61 -51.93 -0.39 0.41 16 LS Contribution 398.22 15.07 6.00 6.00 Total: -1.00 -31.52 398.22 -8.78 -40.30 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -8.03 Total: 16.26 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.02 Total: 5.69 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.49 Total: -55.03 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.22 Total: -29.00 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.52 -8.78 -40.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.202 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds