Wall clock time and date at job start Tue Mar 31 2020 22:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47090 * 2 1 4 4 C 1.50694 * 109.47191 * 120.00509 * 2 1 3 5 5 O 1.21285 * 119.99994 * 119.99905 * 4 2 1 6 6 N 1.34781 * 120.00159 * 299.99745 * 4 2 1 7 7 C 1.46495 * 120.00277 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.47301 * 175.13205 * 7 6 4 9 9 H 1.08997 * 109.54228 * 184.87969 * 8 7 6 10 10 C 1.53097 * 109.50712 * 64.77161 * 8 7 6 11 11 O 1.43020 * 109.26067 * 183.21833 * 10 8 7 12 12 C 1.43011 * 113.73712 * 58.66562 * 11 10 8 13 13 C 1.53091 * 109.26311 * 301.33519 * 12 11 10 14 14 N 1.47011 * 109.26150 * 56.84511 * 13 12 11 15 15 C 1.46899 * 111.00502 * 177.60990 * 14 13 12 16 16 C 1.50702 * 109.46911 * 293.23430 * 15 14 13 17 17 O 1.21288 * 120.00036 * 354.92166 * 16 15 14 18 18 N 1.34780 * 119.99560 * 174.91551 * 16 15 14 19 19 C 1.37104 * 119.99285 * 179.72432 * 18 16 15 20 20 H 1.07988 * 120.00408 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99261 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00410 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99567 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46867 * 60.00276 * 23 21 19 25 25 H 1.48494 * 109.46638 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47061 * 300.00398 * 23 21 19 27 27 C 1.53005 * 109.46701 * 240.00543 * 2 1 3 28 28 C 1.52999 * 117.49712 * 128.62349 * 27 2 1 29 29 C 1.52994 * 117.50162 * 60.00096 * 27 2 1 30 30 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46893 * 299.99519 * 1 2 3 32 32 H 1.09005 * 109.47399 * 59.99199 * 1 2 3 33 33 H 0.97003 * 119.99801 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.46903 * 55.12706 * 7 6 4 35 35 H 1.09002 * 109.46881 * 295.13716 * 7 6 4 36 36 H 1.08999 * 109.50655 * 63.28334 * 10 8 7 37 37 H 1.09004 * 109.54013 * 303.17491 * 10 8 7 38 38 H 1.08998 * 109.50342 * 181.39240 * 12 11 10 39 39 H 1.09006 * 109.50311 * 61.26781 * 12 11 10 40 40 H 1.09009 * 109.50673 * 296.91289 * 13 12 11 41 41 H 1.08996 * 109.54749 * 176.80598 * 13 12 11 42 42 H 1.08993 * 109.47623 * 173.23400 * 15 14 13 43 43 H 1.09003 * 109.46848 * 53.23221 * 15 14 13 44 44 H 0.96998 * 120.00371 * 0.02562 * 18 16 15 45 45 H 0.96992 * 119.99964 * 179.97438 * 22 21 19 46 46 H 1.08995 * 115.54636 * 274.32523 * 27 2 1 47 47 H 1.08997 * 117.50098 * 359.97438 * 28 27 2 48 48 H 1.09000 * 117.50181 * 145.01736 * 28 27 2 49 49 H 1.09004 * 117.50220 * 214.98168 * 29 27 2 50 50 H 1.09006 * 117.49967 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6506 8 6 1.7880 -0.1522 4.8969 9 1 2.2240 -0.6170 5.7811 10 6 0.2621 -0.1468 5.0220 11 8 -0.1163 0.6536 6.1452 12 6 0.3362 2.0079 6.0657 13 6 1.8627 2.0244 5.9511 14 7 2.2699 1.2320 4.7817 15 6 3.7274 1.2687 4.6023 16 6 4.1532 2.6668 4.2347 17 8 3.3175 3.5243 4.0420 18 7 5.4628 2.9641 4.1203 19 6 5.8500 4.2347 3.7803 20 1 5.1057 4.9972 3.6046 21 6 7.2002 4.5414 3.6628 22 7 8.1059 3.6137 3.8771 23 14 7.7278 6.2727 3.2002 24 1 7.2296 7.2309 4.2194 25 1 9.2101 6.3390 3.1406 26 1 7.1631 6.6242 1.8726 27 6 2.0399 -0.7212 -1.2494 28 6 3.0741 0.0053 -2.1118 29 6 1.6357 -0.1494 -2.6096 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.1489 0.5384 2.5436 34 1 3.2822 -1.0163 3.6078 35 1 1.7632 -1.9401 3.6953 36 1 -0.0949 -1.1667 5.1650 37 1 -0.1766 0.2686 4.1147 38 1 0.0327 2.5463 6.9635 39 1 -0.0998 2.4864 5.1886 40 1 2.3001 1.5943 6.8523 41 1 2.2085 3.0513 5.8332 42 1 4.0131 0.5808 3.8066 43 1 4.2153 0.9726 5.5311 44 1 6.1312 2.2782 4.2741 45 1 9.0483 3.8277 3.7947 46 1 2.1267 -1.8043 -1.1644 47 1 3.3908 0.9971 -1.7893 48 1 3.8415 -0.5999 -2.5943 49 1 1.4567 -0.8563 -3.4198 50 1 1.0060 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733699823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:03 Heat of formation + Delta-G solvation = -109.462790 kcal Electronic energy + Delta-G solvation = -31088.301705 eV Core-core repulsion = 26922.478351 eV Total energy + Delta-G solvation = -4165.823354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49980 -40.66627 -39.70280 -38.24459 -37.03684 -36.03359 -35.32349 -33.42652 -33.28512 -31.92638 -30.39602 -27.83906 -27.12430 -25.87182 -25.36496 -23.72120 -23.14624 -22.46505 -21.26926 -20.71478 -20.59190 -19.88088 -18.53886 -17.99795 -17.49849 -17.28028 -17.01650 -16.57554 -16.38975 -16.28038 -15.87261 -15.82007 -15.63442 -15.35998 -15.17602 -15.01857 -14.69534 -14.41913 -14.18284 -13.92072 -13.68253 -13.47878 -13.19394 -13.10314 -13.01197 -12.91540 -12.77485 -12.44343 -12.41412 -12.31172 -12.14513 -12.14271 -11.85298 -11.54639 -11.42258 -11.28463 -10.94443 -10.77309 -10.68840 -10.25409 -10.02072 -9.99137 -9.38035 -8.47075 -5.95925 1.38410 1.40446 1.51220 1.67694 2.03293 2.16460 2.27665 2.57687 2.88711 2.93482 3.19390 3.29322 3.64446 3.67724 3.70655 3.77794 3.96256 3.99701 4.13273 4.15163 4.21794 4.26395 4.33199 4.34742 4.43151 4.47730 4.48146 4.53478 4.61960 4.71922 4.76084 4.77621 4.82889 4.88852 4.93435 4.99038 5.00715 5.04990 5.24586 5.29986 5.34899 5.39620 5.47480 5.73732 5.94230 6.03345 6.16075 6.58166 6.58621 7.11555 7.27634 7.54772 8.09150 8.70220 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007362 B = 0.004121 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3802.535729 B = 6792.364139 C = 9564.401054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 H 0.093 0.907 4 C 0.516 3.484 5 O -0.583 6.583 6 N -0.707 5.707 7 C 0.128 3.872 8 C 0.038 3.962 9 H 0.073 0.927 10 C 0.073 3.927 11 O -0.392 6.392 12 C 0.074 3.926 13 C 0.020 3.980 14 N -0.512 5.512 15 C 0.055 3.945 16 C 0.446 3.554 17 O -0.606 6.606 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.083 0.917 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.992 3.008 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.271 1.271 27 C -0.145 4.145 28 C -0.196 4.196 29 C -0.153 4.153 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.412 0.588 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.392 0.608 45 H 0.277 0.723 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.108 0.892 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.500 -9.685 -3.252 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 H 0.111 0.889 4 C 0.304 3.696 5 O -0.464 6.464 6 N -0.359 5.359 7 C 0.004 3.996 8 C -0.070 4.070 9 H 0.090 0.910 10 C -0.004 4.004 11 O -0.311 6.311 12 C -0.003 4.003 13 C -0.108 4.108 14 N -0.238 5.238 15 C -0.076 4.076 16 C 0.233 3.767 17 O -0.491 6.491 18 N -0.213 5.213 19 C -0.459 4.459 20 H 0.101 0.899 21 C -0.213 4.213 22 N -0.564 5.564 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.164 4.164 28 C -0.233 4.233 29 C -0.190 4.190 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.226 0.774 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.104 0.896 48 H 0.111 0.889 49 H 0.126 0.874 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.690 -9.663 -3.684 19.634 hybrid contribution 1.830 0.630 0.521 2.005 sum -14.860 -9.032 -3.163 17.675 Atomic orbital electron populations 1.21725 0.90323 1.03117 1.03864 1.20871 0.99178 0.99415 0.90585 0.88880 1.20949 0.79199 0.83969 0.85507 1.90652 1.39723 1.28577 1.87435 1.45849 1.53275 1.32102 1.04704 1.21351 0.99409 0.95857 0.82967 1.22708 0.98420 0.88410 0.97502 0.90952 1.22806 0.90725 0.97192 0.89683 1.87967 1.76787 1.22220 1.44104 1.22647 0.91131 0.83238 1.03301 1.22825 0.97920 0.99559 0.90452 1.61776 1.10377 1.10842 1.40831 1.21751 0.89455 0.94527 1.01828 1.20535 0.82377 0.90830 0.82978 1.90461 1.51667 1.50830 1.56153 1.41959 1.06098 1.11549 1.61693 1.19621 0.92198 0.88485 1.45616 0.89944 1.26041 0.95080 1.03334 0.96856 1.69675 1.01940 1.35201 1.49577 0.85006 0.77253 0.77322 0.78889 1.19493 1.19789 1.19669 1.21963 1.04545 0.99050 0.90817 1.23067 0.93667 1.01728 1.04861 1.23053 0.96637 1.03451 0.95817 0.91841 0.91163 0.89874 0.75039 0.92500 0.89054 0.85807 0.91747 0.86842 0.92193 0.94391 0.90579 0.88315 0.92042 0.77446 0.91409 0.88334 0.89573 0.88911 0.87361 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.93 71.98 0.64 -1.40 16 2 C -0.08 -1.75 2.88 -11.54 -0.03 -1.79 16 3 H 0.09 2.19 7.90 -2.38 -0.02 2.17 16 4 C 0.52 14.09 7.15 87.65 0.63 14.72 16 5 O -0.58 -20.21 15.64 -3.05 -0.05 -20.26 16 6 N -0.71 -16.63 5.01 -463.07 -2.32 -18.95 16 7 C 0.13 2.86 4.72 86.38 0.41 3.27 16 8 C 0.04 0.83 2.25 44.92 0.10 0.93 16 9 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 10 C 0.07 1.33 6.19 72.01 0.45 1.77 16 11 O -0.39 -8.77 10.83 -148.98 -1.61 -10.38 16 12 C 0.07 1.71 7.01 72.01 0.50 2.21 16 13 C 0.02 0.59 5.30 86.31 0.46 1.05 16 14 N -0.51 -14.72 3.74 -874.57 -3.28 -17.99 16 15 C 0.06 1.89 5.23 85.56 0.45 2.34 16 16 C 0.45 20.51 7.38 87.66 0.65 21.15 16 17 O -0.61 -31.22 14.22 -3.05 -0.04 -31.26 16 18 N -0.58 -29.36 5.29 -306.98 -1.62 -30.99 16 19 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 20 H 0.08 4.85 7.16 -2.92 -0.02 4.83 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -50.30 13.05 21.67 0.28 -50.02 16 23 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C -0.15 -3.29 4.76 -10.79 -0.05 -3.34 16 28 C -0.20 -4.45 10.18 30.59 0.31 -4.13 16 29 C -0.15 -2.63 9.73 30.59 0.30 -2.33 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.95 7.56 -2.38 -0.02 0.93 16 32 H 0.08 1.04 7.29 -2.38 -0.02 1.02 16 33 H 0.41 9.12 6.66 -92.71 -0.62 8.51 16 34 H 0.06 1.50 6.43 -2.39 -0.02 1.49 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.11 7.00 -2.39 -0.02 1.10 16 38 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.08 2.77 6.10 -2.39 -0.01 2.76 16 42 H 0.10 3.30 5.85 -2.39 -0.01 3.28 16 43 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 44 H 0.39 19.53 7.90 -92.71 -0.73 18.79 16 45 H 0.28 14.21 8.31 -92.71 -0.77 13.43 16 46 H 0.10 2.55 7.47 -2.39 -0.02 2.53 16 47 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 48 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.11 1.57 7.61 -2.38 -0.02 1.55 16 Total: -1.00 -69.26 398.22 -0.91 -70.17 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: -0.38 Total: 48.34 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.09 Total: 16.55 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -6.94 Total: -117.94 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -1.70 Total: -61.90 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -69.26 -0.91 -70.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.294 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds