Wall clock time and date at job start Tue Mar 31 2020 22:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47420 * 2 1 4 4 C 1.50704 * 109.46854 * 120.00070 * 2 1 3 5 5 O 1.21279 * 119.99940 * 119.99993 * 4 2 1 6 6 N 1.34781 * 119.99987 * 299.99719 * 4 2 1 7 7 C 1.46499 * 120.00114 * 180.02562 * 6 4 2 8 8 C 1.52989 * 109.47351 * 174.94819 * 7 6 4 9 9 H 1.09002 * 109.51173 * 174.52301 * 8 7 6 10 10 C 1.53096 * 109.54144 * 294.63127 * 8 7 6 11 11 O 1.43020 * 109.26201 * 176.80256 * 10 8 7 12 12 C 1.43005 * 113.73997 * 301.33508 * 11 10 8 13 13 C 1.53097 * 109.26086 * 58.66214 * 12 11 10 14 14 N 1.47008 * 109.25893 * 303.15478 * 13 12 11 15 15 C 1.46904 * 111.00197 * 182.39036 * 14 13 12 16 16 C 1.50700 * 109.47083 * 300.99233 * 15 14 13 17 17 O 1.21293 * 119.99895 * 354.44708 * 16 15 14 18 18 N 1.34778 * 119.99960 * 174.45833 * 16 15 14 19 19 C 1.37099 * 119.99536 * 179.71759 * 18 16 15 20 20 H 1.08001 * 120.00392 * 0.27633 * 19 18 16 21 21 C 1.38952 * 119.99663 * 180.27455 * 19 18 16 22 22 N 1.31415 * 119.99799 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47066 * 90.00099 * 23 21 19 25 25 H 1.48500 * 109.47381 * 209.99855 * 23 21 19 26 26 H 1.48493 * 109.47201 * 330.00274 * 23 21 19 27 27 C 1.52996 * 109.46928 * 239.99523 * 2 1 3 28 28 C 1.52997 * 117.49552 * 128.74942 * 27 2 1 29 29 C 1.53001 * 117.49840 * 60.09211 * 27 2 1 30 30 H 1.08999 * 109.46655 * 59.99486 * 1 2 3 31 31 H 1.08993 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46625 * 300.00121 * 1 2 3 33 33 H 0.96996 * 119.99968 * 359.97438 * 6 4 2 34 34 H 1.09003 * 109.47125 * 54.94354 * 7 6 4 35 35 H 1.09007 * 109.46696 * 294.94977 * 7 6 4 36 36 H 1.09006 * 109.50755 * 296.73533 * 10 8 7 37 37 H 1.09003 * 109.51051 * 56.86845 * 10 8 7 38 38 H 1.08998 * 109.51352 * 178.60252 * 12 11 10 39 39 H 1.09008 * 109.50655 * 298.68531 * 12 11 10 40 40 H 1.09007 * 109.50927 * 183.22159 * 13 12 11 41 41 H 1.08997 * 109.50872 * 63.09382 * 13 12 11 42 42 H 1.09000 * 109.47319 * 180.98397 * 15 14 13 43 43 H 1.09003 * 109.46665 * 60.98751 * 15 14 13 44 44 H 0.96997 * 120.00121 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99433 * 180.02562 * 22 21 19 46 46 H 1.09004 * 115.55211 * 274.41843 * 27 2 1 47 47 H 1.09002 * 117.50251 * 0.02562 * 28 27 2 48 48 H 1.09003 * 117.49973 * 145.02280 * 28 27 2 49 49 H 1.08995 * 117.50063 * 214.98093 * 29 27 2 50 50 H 1.09001 * 117.49824 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.7917 -0.1495 4.8967 9 1 2.0691 -0.7100 5.7895 10 6 2.5086 1.2033 4.8992 11 8 2.0706 1.9673 6.0262 12 6 0.6602 2.2023 6.0493 13 6 -0.0755 0.8597 6.0584 14 7 0.3384 0.0721 4.8881 15 6 -0.3881 -1.2033 4.8282 16 6 -0.1228 -1.9920 6.0846 17 8 0.6777 -1.5838 6.8993 18 7 -0.7750 -3.1512 6.3030 19 6 -0.5294 -3.8715 7.4433 20 1 0.1834 -3.5080 8.1687 21 6 -1.1975 -5.0694 7.6657 22 7 -2.0644 -5.5120 6.7827 23 14 -0.8634 -6.0506 9.2197 24 1 -1.7985 -5.6177 10.2891 25 1 -1.0616 -7.4964 8.9445 26 1 0.5351 -5.8179 9.6611 27 6 2.0400 -0.7213 -1.2492 28 6 3.0763 0.0038 -2.1100 29 6 1.6374 -0.1484 -2.6096 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.1494 0.5389 2.5436 34 1 3.2817 -1.0190 3.6066 35 1 1.7604 -1.9386 3.6973 36 1 3.5851 1.0446 4.9634 37 1 2.2734 1.7416 3.9810 38 1 0.3996 2.7661 6.9450 39 1 0.3712 2.7703 5.1649 40 1 -1.1508 1.0335 6.0183 41 1 0.1720 0.3152 6.9696 42 1 -0.0502 -1.7737 3.9629 43 1 -1.4570 -1.0088 4.7402 44 1 -1.4153 -3.4775 5.6516 45 1 -2.5310 -6.3480 6.9382 46 1 2.1252 -1.8047 -1.1646 47 1 3.3951 0.9946 -1.7862 48 1 3.8431 -0.6025 -2.5921 49 1 1.4582 -0.8548 -3.4200 50 1 1.0090 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733699829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:10 Heat of formation + Delta-G solvation = -85.777626 kcal Electronic energy + Delta-G solvation = -31071.129861 eV Core-core repulsion = 26906.333572 eV Total energy + Delta-G solvation = -4164.796288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43208 -39.62218 -37.98888 -37.40793 -35.68942 -34.46390 -33.69599 -32.54789 -31.40674 -30.86994 -28.97534 -26.63268 -25.49612 -25.03591 -23.74378 -22.59587 -22.45867 -21.45775 -20.05248 -19.68924 -19.16233 -17.95339 -17.47040 -16.52435 -16.32499 -16.09306 -15.89660 -15.27551 -15.08382 -15.01881 -14.72532 -14.39742 -14.31185 -14.09455 -13.90757 -13.77260 -13.44457 -13.27183 -13.11345 -12.67423 -12.36467 -12.09879 -11.99428 -11.86299 -11.65219 -11.59059 -11.58015 -11.24801 -11.12966 -10.95040 -10.70447 -10.54402 -10.47918 -10.40292 -10.29087 -10.20068 -9.68293 -9.56881 -9.52304 -9.32024 -8.87928 -8.06968 -7.59679 -6.51702 -3.93202 2.72147 3.10115 3.19571 3.21061 3.26617 3.65564 3.73652 3.94955 4.07966 4.10176 4.39993 4.60365 4.69975 4.85985 4.87388 4.94573 4.99491 5.05700 5.13565 5.21082 5.22916 5.28006 5.33872 5.40958 5.46128 5.50804 5.54277 5.64355 5.68861 5.74985 5.78124 5.83137 5.85257 5.90265 5.96930 5.98925 6.06849 6.11644 6.15200 6.33259 6.52860 6.61472 7.10083 7.14840 7.28134 7.45515 7.63761 7.93774 8.32821 8.47625 9.06183 9.41230 9.90884 10.64653 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.003120 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.646975 B = 8972.722538 C =10649.263829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 H 0.093 0.907 4 C 0.515 3.485 5 O -0.542 6.542 6 N -0.716 5.716 7 C 0.129 3.871 8 C 0.017 3.983 9 H 0.110 0.890 10 C 0.076 3.924 11 O -0.383 6.383 12 C 0.069 3.931 13 C -0.002 4.002 14 N -0.506 5.506 15 C 0.036 3.964 16 C 0.403 3.597 17 O -0.593 6.593 18 N -0.552 5.552 19 C -0.304 4.304 20 H 0.103 0.897 21 C 0.025 3.975 22 N -0.896 5.896 23 Si 0.930 3.070 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.269 1.269 27 C -0.132 4.132 28 C -0.179 4.179 29 C -0.179 4.179 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.406 0.594 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.393 0.607 45 H 0.273 0.727 46 H 0.116 0.884 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 14.561 -14.312 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 H 0.111 0.889 4 C 0.300 3.700 5 O -0.419 6.419 6 N -0.369 5.369 7 C 0.005 3.995 8 C -0.092 4.092 9 H 0.128 0.872 10 C -0.001 4.001 11 O -0.301 6.301 12 C -0.008 4.008 13 C -0.130 4.130 14 N -0.231 5.231 15 C -0.095 4.095 16 C 0.189 3.811 17 O -0.481 6.481 18 N -0.186 5.186 19 C -0.433 4.433 20 H 0.121 0.879 21 C -0.177 4.177 22 N -0.536 5.536 23 Si 0.757 3.243 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.151 4.151 28 C -0.216 4.216 29 C -0.216 4.216 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.134 0.866 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.112 0.888 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.861 14.274 -14.111 20.439 hybrid contribution -0.696 -1.090 0.917 1.585 sum 3.165 13.184 -13.194 18.919 Atomic orbital electron populations 1.21755 0.92426 1.03164 1.02586 1.20840 0.97531 0.99724 0.91940 0.88850 1.20513 0.80185 0.84659 0.84606 1.90696 1.38037 1.26361 1.86814 1.45966 1.53455 1.32390 1.05071 1.21372 0.99353 0.96103 0.82717 1.22895 0.89386 0.97558 0.99376 0.87209 1.22605 0.98555 0.90181 0.88791 1.87978 1.22936 1.73080 1.46086 1.22617 0.80868 0.95855 1.01495 1.23038 0.99590 0.94753 0.95574 1.62706 1.04281 1.16012 1.40069 1.22111 0.99720 0.90328 0.97382 1.20957 0.86031 0.84196 0.89894 1.90413 1.38849 1.70275 1.48520 1.42050 1.37058 1.18833 1.20708 1.19714 1.23195 1.02003 0.98421 0.87892 1.25305 0.95927 0.97385 0.99102 1.69611 1.26302 1.22435 1.35301 0.85855 0.79090 0.78426 0.80932 1.20323 1.20801 1.19358 1.22051 1.03147 1.00210 0.89675 1.23009 0.92533 1.01831 1.04205 1.22977 0.98116 1.03236 0.97311 0.91560 0.91777 0.91713 0.75819 0.90891 0.91090 0.88904 0.93251 0.88968 0.93244 0.90612 0.89290 0.88945 0.89262 0.77387 0.91675 0.86606 0.88976 0.88846 0.88777 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.93 37.16 0.33 -0.80 16 2 C -0.08 -0.74 2.88 -91.77 -0.26 -1.00 16 3 H 0.09 0.73 7.90 -51.93 -0.41 0.31 16 4 C 0.51 6.60 7.15 -10.98 -0.08 6.52 16 5 O -0.54 -9.23 15.64 5.56 0.09 -9.14 16 6 N -0.72 -8.40 4.94 -60.29 -0.30 -8.70 16 7 C 0.13 1.82 4.68 -4.05 -0.02 1.80 16 8 C 0.02 0.25 1.91 -67.61 -0.13 0.12 16 9 H 0.11 2.12 5.62 -51.93 -0.29 1.82 16 10 C 0.08 0.99 6.21 37.21 0.23 1.22 16 11 O -0.38 -5.69 10.83 -35.23 -0.38 -6.07 16 12 C 0.07 0.88 7.01 37.21 0.26 1.14 16 13 C 0.00 -0.03 5.25 -3.72 -0.02 -0.05 16 14 N -0.51 -7.30 4.09 -227.78 -0.93 -8.24 16 15 C 0.04 0.59 5.55 -4.97 -0.03 0.56 16 16 C 0.40 8.80 7.15 -10.98 -0.08 8.72 16 17 O -0.59 -14.53 11.16 5.55 0.06 -14.47 16 18 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 19 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 23 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.13 -1.31 4.75 -90.62 -0.43 -1.74 16 28 C -0.18 -1.53 10.18 -26.70 -0.27 -1.80 16 29 C -0.18 -1.38 9.74 -26.69 -0.26 -1.64 16 30 H 0.07 0.43 7.29 -51.93 -0.38 0.06 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.48 7.57 -51.92 -0.39 0.08 16 33 H 0.41 4.09 6.84 -40.82 -0.28 3.81 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.18 6.59 -51.92 -0.34 0.84 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.55 7.26 -51.93 -0.38 0.17 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.72 5.54 -51.93 -0.29 1.43 16 42 H 0.09 1.46 6.14 -51.93 -0.32 1.15 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.12 1.40 7.47 -51.93 -0.39 1.02 16 47 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 48 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 0.61 7.61 -51.93 -0.40 0.22 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -31.07 392.96 -8.81 -39.88 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -7.92 Total: 16.49 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.00 Total: 5.26 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.56 Total: -53.61 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.23 Total: -29.68 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.07 -8.81 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.894 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds