Wall clock time and date at job start Tue Mar 31 2020 22:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47420 * 2 1 4 4 C 1.50704 * 109.46854 * 120.00070 * 2 1 3 5 5 O 1.21279 * 119.99940 * 119.99993 * 4 2 1 6 6 N 1.34781 * 119.99987 * 299.99719 * 4 2 1 7 7 C 1.46499 * 120.00114 * 180.02562 * 6 4 2 8 8 C 1.52989 * 109.47351 * 174.94819 * 7 6 4 9 9 H 1.09002 * 109.51173 * 174.52301 * 8 7 6 10 10 C 1.53096 * 109.54144 * 294.63127 * 8 7 6 11 11 O 1.43020 * 109.26201 * 176.80256 * 10 8 7 12 12 C 1.43005 * 113.73997 * 301.33508 * 11 10 8 13 13 C 1.53097 * 109.26086 * 58.66214 * 12 11 10 14 14 N 1.47008 * 109.25893 * 303.15478 * 13 12 11 15 15 C 1.46904 * 111.00197 * 182.39036 * 14 13 12 16 16 C 1.50700 * 109.47083 * 300.99233 * 15 14 13 17 17 O 1.21293 * 119.99895 * 354.44708 * 16 15 14 18 18 N 1.34778 * 119.99960 * 174.45833 * 16 15 14 19 19 C 1.37099 * 119.99536 * 179.71759 * 18 16 15 20 20 H 1.08001 * 120.00392 * 0.27633 * 19 18 16 21 21 C 1.38952 * 119.99663 * 180.27455 * 19 18 16 22 22 N 1.31415 * 119.99799 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47066 * 90.00099 * 23 21 19 25 25 H 1.48500 * 109.47381 * 209.99855 * 23 21 19 26 26 H 1.48493 * 109.47201 * 330.00274 * 23 21 19 27 27 C 1.52996 * 109.46928 * 239.99523 * 2 1 3 28 28 C 1.52997 * 117.49552 * 128.74942 * 27 2 1 29 29 C 1.53001 * 117.49840 * 60.09211 * 27 2 1 30 30 H 1.08999 * 109.46655 * 59.99486 * 1 2 3 31 31 H 1.08993 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46625 * 300.00121 * 1 2 3 33 33 H 0.96996 * 119.99968 * 359.97438 * 6 4 2 34 34 H 1.09003 * 109.47125 * 54.94354 * 7 6 4 35 35 H 1.09007 * 109.46696 * 294.94977 * 7 6 4 36 36 H 1.09006 * 109.50755 * 296.73533 * 10 8 7 37 37 H 1.09003 * 109.51051 * 56.86845 * 10 8 7 38 38 H 1.08998 * 109.51352 * 178.60252 * 12 11 10 39 39 H 1.09008 * 109.50655 * 298.68531 * 12 11 10 40 40 H 1.09007 * 109.50927 * 183.22159 * 13 12 11 41 41 H 1.08997 * 109.50872 * 63.09382 * 13 12 11 42 42 H 1.09000 * 109.47319 * 180.98397 * 15 14 13 43 43 H 1.09003 * 109.46665 * 60.98751 * 15 14 13 44 44 H 0.96997 * 120.00121 * 359.97438 * 18 16 15 45 45 H 0.97001 * 119.99433 * 180.02562 * 22 21 19 46 46 H 1.09004 * 115.55211 * 274.41843 * 27 2 1 47 47 H 1.09002 * 117.50251 * 0.02562 * 28 27 2 48 48 H 1.09003 * 117.49973 * 145.02280 * 28 27 2 49 49 H 1.08995 * 117.50063 * 214.98093 * 29 27 2 50 50 H 1.09001 * 117.49824 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.7917 -0.1495 4.8967 9 1 2.0691 -0.7100 5.7895 10 6 2.5086 1.2033 4.8992 11 8 2.0706 1.9673 6.0262 12 6 0.6602 2.2023 6.0493 13 6 -0.0755 0.8597 6.0584 14 7 0.3384 0.0721 4.8881 15 6 -0.3881 -1.2033 4.8282 16 6 -0.1228 -1.9920 6.0846 17 8 0.6777 -1.5838 6.8993 18 7 -0.7750 -3.1512 6.3030 19 6 -0.5294 -3.8715 7.4433 20 1 0.1834 -3.5080 8.1687 21 6 -1.1975 -5.0694 7.6657 22 7 -2.0644 -5.5120 6.7827 23 14 -0.8634 -6.0506 9.2197 24 1 -1.7985 -5.6177 10.2891 25 1 -1.0616 -7.4964 8.9445 26 1 0.5351 -5.8179 9.6611 27 6 2.0400 -0.7213 -1.2492 28 6 3.0763 0.0038 -2.1100 29 6 1.6374 -0.1484 -2.6096 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.1494 0.5389 2.5436 34 1 3.2817 -1.0190 3.6066 35 1 1.7604 -1.9386 3.6973 36 1 3.5851 1.0446 4.9634 37 1 2.2734 1.7416 3.9810 38 1 0.3996 2.7661 6.9450 39 1 0.3712 2.7703 5.1649 40 1 -1.1508 1.0335 6.0183 41 1 0.1720 0.3152 6.9696 42 1 -0.0502 -1.7737 3.9629 43 1 -1.4570 -1.0088 4.7402 44 1 -1.4153 -3.4775 5.6516 45 1 -2.5310 -6.3480 6.9382 46 1 2.1252 -1.8047 -1.1646 47 1 3.3951 0.9946 -1.7862 48 1 3.8431 -0.6025 -2.5921 49 1 1.4582 -0.8548 -3.4200 50 1 1.0090 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733699829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:09 Heat of formation + Delta-G solvation = -109.272514 kcal Electronic energy + Delta-G solvation = -31072.148675 eV Core-core repulsion = 26906.333572 eV Total energy + Delta-G solvation = -4165.815103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67634 -40.76258 -39.54242 -38.19899 -36.98268 -36.06441 -35.21678 -33.42012 -33.35391 -31.87310 -30.35101 -27.82853 -27.09456 -25.80649 -25.25960 -23.70216 -23.08960 -22.43073 -21.51161 -20.73755 -20.55861 -19.81322 -18.46195 -17.80755 -17.69890 -17.46522 -16.96595 -16.58698 -16.30950 -16.02990 -16.00291 -15.82248 -15.65381 -15.32599 -15.31244 -15.05973 -14.67330 -14.46197 -14.11617 -13.70482 -13.57220 -13.32531 -13.17337 -13.06752 -12.98854 -12.82436 -12.79840 -12.48411 -12.28767 -12.24975 -12.18287 -11.97346 -11.80266 -11.50904 -11.38673 -11.23694 -11.08405 -10.88783 -10.69299 -10.59804 -10.03857 -10.00622 -9.14822 -8.51071 -6.00723 1.31995 1.37133 1.49244 1.70777 1.94927 2.20484 2.24800 2.76247 2.95517 2.98821 3.15027 3.20049 3.70863 3.71923 3.77569 3.83437 4.02124 4.05769 4.18283 4.24233 4.31534 4.33136 4.39431 4.46808 4.48510 4.54759 4.58908 4.59464 4.64110 4.67981 4.76672 4.83070 4.93332 4.95910 5.03101 5.05458 5.12160 5.24451 5.30653 5.36004 5.36582 5.39227 5.48393 5.75258 5.87979 5.95860 6.22606 6.52677 6.66433 7.06734 7.33854 7.49399 8.03812 8.64526 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.003120 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.646975 B = 8972.722538 C =10649.263829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.068 4.068 3 H 0.121 0.879 4 C 0.511 3.489 5 O -0.590 6.590 6 N -0.700 5.700 7 C 0.140 3.860 8 C 0.024 3.976 9 H 0.063 0.937 10 C 0.080 3.920 11 O -0.404 6.404 12 C 0.071 3.929 13 C -0.002 4.002 14 N -0.482 5.482 15 C 0.048 3.952 16 C 0.407 3.593 17 O -0.619 6.619 18 N -0.568 5.568 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.990 3.010 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.275 1.275 27 C -0.156 4.156 28 C -0.182 4.182 29 C -0.159 4.159 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.097 0.903 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 17.158 -15.975 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 H 0.139 0.861 4 C 0.299 3.701 5 O -0.471 6.471 6 N -0.354 5.354 7 C 0.014 3.986 8 C -0.086 4.086 9 H 0.080 0.920 10 C 0.003 3.997 11 O -0.322 6.322 12 C -0.006 4.006 13 C -0.130 4.130 14 N -0.205 5.205 15 C -0.084 4.084 16 C 0.194 3.806 17 O -0.507 6.507 18 N -0.205 5.205 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.558 5.558 23 Si 0.814 3.186 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.200 1.200 27 C -0.175 4.175 28 C -0.219 4.219 29 C -0.196 4.196 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.257 0.743 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.119 0.881 43 H 0.133 0.867 44 H 0.229 0.771 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.124 0.876 48 H 0.106 0.894 49 H 0.115 0.885 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.910 16.915 -15.785 23.318 hybrid contribution -0.345 -1.840 1.413 2.345 sum 2.566 15.075 -14.372 20.986 Atomic orbital electron populations 1.21774 0.91058 1.02521 1.04262 1.20852 0.98433 1.00237 0.89391 0.86111 1.21256 0.79159 0.84052 0.85603 1.90683 1.40277 1.28644 1.87460 1.45792 1.53191 1.32318 1.04059 1.21054 0.99051 0.94837 0.83616 1.22725 0.89771 0.98531 0.97531 0.91965 1.22673 0.98689 0.88782 0.89597 1.87961 1.24174 1.73077 1.47038 1.22758 0.79512 0.94557 1.03747 1.23055 1.01198 0.95543 0.93242 1.62807 1.03837 1.14413 1.39447 1.22148 1.01572 0.90343 0.94341 1.22048 0.84195 0.83371 0.90956 1.90434 1.39516 1.70700 1.50076 1.42128 1.38155 1.19753 1.20417 1.19620 1.23842 1.03367 0.99422 0.90463 1.26023 0.95523 0.97759 1.01839 1.69668 1.26747 1.22893 1.36492 0.84974 0.78546 0.77449 0.77669 1.19449 1.19592 1.20002 1.21963 1.05466 0.98743 0.91292 1.23107 0.92953 1.02092 1.03742 1.23066 0.97528 1.03510 0.95489 0.89342 0.93593 0.90567 0.74322 0.91157 0.94022 0.88249 0.90260 0.87639 0.90041 0.88714 0.94070 0.88111 0.86680 0.77146 0.91249 0.89887 0.87632 0.89392 0.88469 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.93 71.98 0.64 -1.16 16 2 C -0.07 -1.12 2.88 -11.54 -0.03 -1.15 16 3 H 0.12 1.37 7.90 -2.39 -0.02 1.35 16 4 C 0.51 12.65 7.15 87.66 0.63 13.28 16 5 O -0.59 -20.60 15.64 -3.03 -0.05 -20.64 16 6 N -0.70 -15.34 4.94 -463.06 -2.29 -17.63 16 7 C 0.14 3.98 4.68 86.38 0.40 4.39 16 8 C 0.02 0.70 1.91 44.92 0.09 0.79 16 9 H 0.06 2.52 5.62 -2.39 -0.01 2.50 16 10 C 0.08 1.92 6.21 72.01 0.45 2.37 16 11 O -0.40 -11.29 10.83 -148.98 -1.61 -12.90 16 12 C 0.07 1.62 7.01 72.01 0.50 2.12 16 13 C 0.00 -0.07 5.25 86.31 0.45 0.39 16 14 N -0.48 -13.26 4.09 -874.56 -3.58 -16.84 16 15 C 0.05 1.53 5.55 85.56 0.48 2.00 16 16 C 0.41 18.33 7.15 87.66 0.63 18.96 16 17 O -0.62 -31.87 11.16 -3.07 -0.03 -31.90 16 18 N -0.57 -28.62 5.29 -306.98 -1.62 -30.25 16 19 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 22 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 23 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 C -0.16 -2.91 4.75 -10.80 -0.05 -2.96 16 28 C -0.18 -2.77 10.18 30.62 0.31 -2.46 16 29 C -0.16 -2.03 9.74 30.62 0.30 -1.73 16 30 H 0.09 0.79 7.29 -2.39 -0.02 0.77 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.82 7.57 -2.38 -0.02 0.80 16 33 H 0.42 7.06 6.84 -92.71 -0.63 6.43 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.44 6.59 -2.38 -0.02 1.43 16 36 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.08 1.47 7.26 -2.39 -0.02 1.45 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.04 1.62 5.54 -2.39 -0.01 1.61 16 42 H 0.10 3.15 6.14 -2.39 -0.01 3.14 16 43 H 0.12 3.18 8.14 -2.39 -0.02 3.17 16 44 H 0.39 19.14 7.90 -92.71 -0.73 18.41 16 45 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.08 2.10 7.47 -2.38 -0.02 2.08 16 47 H 0.11 1.31 8.05 -2.39 -0.02 1.30 16 48 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.11 1.00 7.61 -2.39 -0.02 0.99 16 Total: -1.00 -72.08 392.96 -1.20 -73.28 By element: Atomic # 1 Polarization: 44.53 SS G_CDS: -0.40 Total: 44.13 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.07 Total: 16.78 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -7.21 Total: -113.97 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -1.69 Total: -65.44 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.08 -1.20 -73.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733699829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.994 kcal (2) G-P(sol) polarization free energy of solvation -72.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds