Wall clock time and date at job start Tue Mar 31 2020 22:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99351 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21281 * 120.00174 * 0.02562 * 5 4 2 7 7 C 1.50708 * 120.00056 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.46959 * 180.02562 * 7 5 4 9 9 C 1.46088 * 118.72851 * 269.73230 * 8 7 5 10 10 C 1.53208 * 109.82591 * 161.46739 * 9 8 7 11 11 O 1.43247 * 108.50941 * 49.53919 * 10 9 8 12 12 C 1.42966 * 112.98934 * 291.45901 * 11 10 9 13 13 C 1.33866 * 118.73110 * 90.00149 * 8 7 5 14 14 O 1.21291 * 118.83070 * 1.88184 * 13 8 7 15 15 C 1.52997 * 109.47441 * 239.99838 * 2 1 3 16 16 C 1.53041 * 109.46332 * 180.02562 * 15 2 1 17 17 C 1.53190 * 109.31361 * 178.60104 * 16 15 2 18 18 N 1.46924 * 108.76422 * 54.65229 * 17 16 15 19 19 C 1.36938 * 120.62707 * 126.40600 * 18 17 16 20 20 H 1.07997 * 120.00548 * 331.82331 * 19 18 17 21 21 C 1.38818 * 119.99900 * 151.82191 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07628 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.07248 * 21 19 18 24 24 H 1.48504 * 109.47271 * 90.00439 * 23 21 19 25 25 H 1.48498 * 109.47246 * 210.00631 * 23 21 19 26 26 H 1.48500 * 109.47104 * 330.00259 * 23 21 19 27 27 C 1.46921 * 118.74105 * 306.38135 * 18 17 16 28 28 C 1.53043 * 109.45889 * 59.96913 * 15 2 1 29 29 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47535 * 60.00571 * 1 2 3 31 31 H 1.09002 * 109.47304 * 299.99807 * 1 2 3 32 32 H 0.97002 * 119.99587 * 95.00574 * 4 2 1 33 33 H 1.09001 * 109.46787 * 300.00324 * 7 5 4 34 34 H 1.08996 * 109.46578 * 60.00112 * 7 5 4 35 35 H 1.09001 * 109.39979 * 281.78352 * 9 8 7 36 36 H 1.09007 * 109.39653 * 41.50594 * 9 8 7 37 37 H 1.09004 * 109.82980 * 289.74880 * 10 9 8 38 38 H 1.08997 * 109.67540 * 169.23836 * 10 9 8 39 39 H 1.08996 * 109.41550 * 289.49620 * 12 11 10 40 40 H 1.09003 * 109.36046 * 169.66566 * 12 11 10 41 41 H 1.08998 * 109.45946 * 299.99944 * 15 2 1 42 42 H 1.09006 * 109.49033 * 298.56713 * 16 15 2 43 43 H 1.09004 * 109.49907 * 58.65693 * 16 15 2 44 44 H 1.09003 * 109.59716 * 294.86739 * 17 16 15 45 45 H 1.08999 * 109.70155 * 174.50222 * 17 16 15 46 46 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.59222 * 293.82594 * 27 18 17 48 48 H 1.09006 * 109.70406 * 173.46617 * 27 18 17 49 49 H 1.08996 * 109.49606 * 301.33993 * 28 15 2 50 50 H 1.08999 * 109.49655 * 61.40257 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1586 2.4117 7 6 2.6500 -0.7283 3.5876 8 7 2.6985 0.2131 4.7092 9 6 3.9268 0.9702 4.9377 10 6 3.6308 2.1861 5.8216 11 8 2.8858 1.7475 6.9638 12 6 1.5641 1.3128 6.6350 13 6 1.6176 0.3421 5.4882 14 8 0.6470 -0.3489 5.2610 15 6 2.0401 -0.7213 -1.2492 16 6 3.5705 -0.7217 -1.2486 17 6 4.0774 -1.4748 -2.4825 18 7 3.4748 -0.8771 -3.6817 19 6 4.2607 -0.4516 -4.7193 20 1 5.2718 -0.1221 -4.5310 21 6 3.7578 -0.4439 -6.0131 22 7 2.6779 -1.1381 -6.3035 23 14 4.6135 0.5517 -7.3419 24 1 5.6370 -0.2914 -8.0104 25 1 3.6140 1.0038 -8.3427 26 1 5.2699 1.7344 -6.7289 27 6 2.0130 -0.7449 -3.7468 28 6 1.5292 -0.0001 -2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 2.2491 -1.6317 1.1527 33 1 1.9778 -1.5506 3.8326 34 1 3.6493 -1.1200 3.3979 35 1 4.6600 0.3309 5.4294 36 1 4.3267 1.3085 3.9818 37 1 3.0462 2.9165 5.2621 38 1 4.5669 2.6394 6.1476 39 1 0.9591 2.1743 6.3526 40 1 1.1180 0.8253 7.5019 41 1 1.6767 -1.7489 -1.2490 42 1 3.9344 0.3055 -1.2740 43 1 3.9338 -1.2146 -0.3469 44 1 3.7905 -2.5242 -2.4137 45 1 5.1629 -1.3959 -2.5409 46 1 2.3263 -1.1324 -7.2075 47 1 1.5577 -1.7347 -3.7811 48 1 1.7341 -0.1833 -4.6385 49 1 0.4395 0.0205 -2.4867 50 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734610484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:35 Heat of formation + Delta-G solvation = -90.460678 kcal Electronic energy + Delta-G solvation = -30565.009720 eV Core-core repulsion = 26400.010359 eV Total energy + Delta-G solvation = -4164.999360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17917 -39.74546 -38.12290 -37.86253 -35.78704 -35.18586 -32.93910 -31.54205 -30.71933 -29.86558 -29.52866 -28.79810 -26.40504 -25.37071 -24.31349 -23.08812 -22.05670 -20.98841 -20.45702 -19.47625 -19.13980 -18.09744 -17.64008 -17.37986 -16.71589 -16.19939 -15.97463 -15.83090 -15.08599 -14.91145 -14.73950 -14.60798 -14.10027 -13.85667 -13.65599 -13.60133 -13.51481 -13.35315 -13.29522 -12.95565 -12.44510 -12.34286 -12.17541 -12.13320 -11.83321 -11.74237 -11.35737 -11.14059 -11.00995 -10.95886 -10.71347 -10.45516 -10.29593 -10.18951 -10.17448 -9.92927 -9.82287 -9.56726 -9.49134 -9.07854 -8.97032 -8.47824 -6.67453 -5.80139 -3.22347 2.07672 2.35577 2.54885 3.18720 3.32209 3.36018 3.43324 3.45714 3.89963 4.29068 4.48634 4.53485 4.62712 4.67070 4.77018 4.92220 4.96322 4.97792 5.06206 5.15035 5.21211 5.27740 5.32649 5.37445 5.51683 5.66140 5.71392 5.74727 5.86176 5.94588 6.06460 6.16745 6.28111 6.30149 6.30962 6.43476 6.51446 6.59903 6.70407 6.75744 6.83189 6.91122 6.96828 7.35292 7.46505 7.64921 7.66762 7.78295 8.16297 8.44355 9.20607 9.84212 10.40935 11.28354 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024595 B = 0.002192 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.158522 B =12772.186981 C =13270.457039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.084 0.916 4 N -0.717 5.717 5 C 0.499 3.501 6 O -0.538 6.538 7 C 0.088 3.912 8 N -0.586 5.586 9 C 0.082 3.918 10 C 0.044 3.956 11 O -0.372 6.372 12 C 0.052 3.948 13 C 0.494 3.506 14 O -0.539 6.539 15 C -0.084 4.084 16 C -0.124 4.124 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.399 0.601 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.015 0.985 45 H 0.052 0.948 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.087 0.913 49 H 0.054 0.946 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 2.391 24.571 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.102 0.898 4 N -0.369 5.369 5 C 0.283 3.717 6 O -0.414 6.414 7 C -0.039 4.039 8 N -0.319 5.319 9 C -0.041 4.041 10 C -0.033 4.033 11 O -0.290 6.290 12 C -0.027 4.027 13 C 0.282 3.718 14 O -0.417 6.417 15 C -0.103 4.103 16 C -0.164 4.164 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.233 0.767 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.091 2.890 24.529 24.698 hybrid contribution 0.452 -0.010 -1.198 1.280 sum 0.360 2.881 23.331 23.510 Atomic orbital electron populations 1.22191 0.95556 1.01994 1.02257 1.21158 0.93729 0.97419 0.83462 0.89791 1.46108 1.66950 1.14066 1.09741 1.20987 0.78111 0.87813 0.84793 1.90682 1.49919 1.16032 1.84808 1.21400 1.04246 0.93182 0.85044 1.47013 1.14276 1.42291 1.28316 1.22239 0.86342 0.94025 1.01448 1.23059 0.98107 0.94927 0.87239 1.88180 1.25159 1.83977 1.31666 1.22819 0.86012 0.96818 0.97038 1.20996 0.82372 0.84292 0.84157 1.90753 1.34111 1.44850 1.71949 1.21336 0.96381 0.99321 0.93252 1.22033 0.94537 1.01265 0.98536 1.20886 0.96501 0.93899 0.86801 1.44044 1.02047 1.69883 1.15526 1.19160 0.97223 1.36170 0.85597 0.91839 1.25043 0.98421 0.99159 0.97068 1.70028 1.24547 1.40915 1.19257 0.86322 0.78681 0.80226 0.81693 1.21413 1.21547 1.20519 1.20761 0.83257 0.96814 0.94568 1.22266 0.98888 1.00042 0.96125 0.92630 0.91020 0.92847 0.76655 0.86536 0.87222 0.90297 0.89273 0.91273 0.86495 0.88935 0.85128 0.91463 0.92441 0.93475 0.96676 0.92988 0.93649 0.96502 0.89475 0.92793 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.13 37.16 0.34 -1.84 16 2 C 0.15 2.02 2.16 -67.93 -0.15 1.88 16 3 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 4 N -0.72 -8.27 4.36 -53.80 -0.23 -8.50 16 5 C 0.50 6.21 7.86 -10.98 -0.09 6.12 16 6 O -0.54 -8.73 16.09 5.56 0.09 -8.65 16 7 C 0.09 0.81 5.80 -5.19 -0.03 0.78 16 8 N -0.59 -5.71 2.32 -175.66 -0.41 -6.12 16 9 C 0.08 0.56 6.63 -4.16 -0.03 0.53 16 10 C 0.04 0.27 6.91 37.26 0.26 0.53 16 11 O -0.37 -2.98 10.85 -35.23 -0.38 -3.36 16 12 C 0.05 0.43 6.98 35.83 0.25 0.68 16 13 C 0.49 5.63 7.58 -11.57 -0.09 5.54 16 14 O -0.54 -8.01 16.36 5.55 0.09 -7.92 16 15 C -0.08 -1.29 1.79 -90.58 -0.16 -1.45 16 16 C -0.12 -2.00 5.22 -26.61 -0.14 -2.14 16 17 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 18 N -0.59 -14.50 2.99 -172.32 -0.52 -15.02 16 19 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 20 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 23 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 28 C -0.13 -2.43 5.04 -26.61 -0.13 -2.56 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.95 6.40 -51.93 -0.33 0.62 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.40 3.62 8.39 -40.82 -0.34 3.28 16 33 H 0.12 1.09 7.23 -51.93 -0.38 0.71 16 34 H 0.11 0.64 8.04 -51.93 -0.42 0.22 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 37 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 38 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.29 6.07 -51.93 -0.31 1.97 16 49 H 0.05 0.89 6.36 -51.93 -0.33 0.56 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -34.94 393.87 -8.42 -43.36 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.34 Total: 1.22 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -0.24 Total: 7.89 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.54 Total: -55.01 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.20 Total: -19.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.94 -8.42 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734610484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.103 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds