Wall clock time and date at job start Tue Mar 31 2020 22:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.48895 * 2 1 4 4 C 1.53095 * 109.47885 * 239.97430 * 2 1 3 5 5 C 1.53178 * 109.16080 * 182.40869 * 4 2 1 6 6 H 1.08994 * 109.54691 * 297.11219 * 5 4 2 7 7 C 1.50703 * 109.61805 * 176.88850 * 5 4 2 8 8 O 1.21287 * 119.99348 * 0.40608 * 7 5 4 9 9 N 1.34777 * 120.00330 * 180.39963 * 7 5 4 10 10 C 1.46491 * 120.00015 * 180.02562 * 9 7 5 11 11 H 1.09001 * 112.85072 * 336.19575 * 10 9 7 12 12 C 1.53782 * 113.61642 * 107.50353 * 10 9 7 13 13 C 1.53773 * 87.08309 * 89.11444 * 12 10 9 14 14 H 1.08999 * 113.61609 * 270.88418 * 13 12 10 15 15 N 1.46898 * 113.69199 * 139.98998 * 13 12 10 16 16 C 1.46899 * 110.99859 * 107.46513 * 15 13 12 17 17 C 1.50701 * 109.47189 * 179.97438 * 16 15 13 18 18 O 1.21296 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99892 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99643 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00394 * 0.02562 * 20 19 17 22 22 C 1.38960 * 119.99595 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99707 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47257 * 90.00291 * 24 22 20 26 26 H 1.48500 * 109.47438 * 210.00204 * 24 22 20 27 27 H 1.48507 * 109.47343 * 330.00558 * 24 22 20 28 28 C 1.53779 * 113.61661 * 204.99973 * 10 9 7 29 29 C 1.53176 * 109.03609 * 56.98198 * 5 4 2 30 30 C 1.53095 * 109.16286 * 303.01594 * 29 5 4 31 31 O 1.42903 * 109.41530 * 57.61206 * 30 29 5 32 32 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47569 * 300.02764 * 1 2 3 34 34 H 1.09009 * 109.47458 * 60.02557 * 1 2 3 35 35 H 1.08998 * 109.52174 * 62.50609 * 4 2 1 36 36 H 1.08997 * 109.57369 * 302.34399 * 4 2 1 37 37 H 0.97005 * 119.99506 * 0.02562 * 9 7 5 38 38 H 1.09006 * 113.61457 * 203.66374 * 12 10 9 39 39 H 1.08997 * 113.61133 * 334.56321 * 12 10 9 40 40 H 1.00904 * 111.00407 * 231.41971 * 15 13 12 41 41 H 1.09001 * 109.47403 * 300.00107 * 16 15 13 42 42 H 1.08997 * 109.47126 * 60.00350 * 16 15 13 43 43 H 0.96994 * 120.00333 * 359.97438 * 19 17 16 44 44 H 0.96995 * 119.99719 * 179.97438 * 23 22 20 45 45 H 1.09001 * 113.61099 * 25.43035 * 28 10 9 46 46 H 1.08995 * 113.62105 * 156.24609 * 28 10 9 47 47 H 1.09001 * 109.52789 * 62.92535 * 29 5 4 48 48 H 1.09007 * 109.52321 * 183.11250 * 29 5 4 49 49 H 1.08997 * 109.47843 * 177.59528 * 30 29 5 50 50 H 1.08997 * 109.48336 * 297.62823 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 1 3.9689 0.2435 -1.2408 7 6 4.0818 -1.5464 -2.3991 8 8 3.3002 -2.0094 -3.2028 9 7 5.4069 -1.7253 -2.5677 10 6 5.9034 -2.4787 -3.7218 11 1 5.1644 -3.1711 -4.1249 12 6 6.5729 -1.5984 -4.7904 13 6 7.8892 -1.8041 -4.0225 14 1 8.0627 -1.0591 -3.2459 15 7 9.0556 -2.0030 -4.8930 16 6 9.9247 -0.8187 -4.8873 17 6 11.1080 -1.0596 -5.7889 18 8 11.2163 -2.1139 -6.3787 19 7 12.0458 -0.1035 -5.9400 20 6 13.1220 -0.3225 -6.7607 21 1 13.2180 -1.2609 -7.2864 22 6 14.0886 0.6635 -6.9168 23 7 13.9715 1.8056 -6.2775 24 14 15.5553 0.3649 -8.0344 25 1 15.2286 0.8160 -9.4110 26 1 16.7260 1.1259 -7.5289 27 1 15.8772 -1.0847 -8.0519 28 6 7.2844 -3.1155 -3.4939 29 6 4.0175 -1.4601 0.0808 30 6 3.4306 -0.7094 1.2790 31 8 2.0065 -0.6742 1.1664 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5143 0.8897 34 1 -0.3634 0.5135 -0.8903 35 1 1.7148 -0.1842 -2.1399 36 1 1.6442 -1.7374 -1.2722 37 1 6.0319 -1.3552 -1.9247 38 1 6.5736 -2.0439 -5.7852 39 1 6.2226 -0.5663 -4.7879 40 1 9.5691 -2.8296 -4.6265 41 1 9.3644 0.0450 -5.2455 42 1 10.2744 -0.6295 -3.8724 43 1 11.9590 0.7398 -5.4687 44 1 14.6464 2.4937 -6.3862 45 1 7.5087 -3.3081 -2.4447 46 1 7.4791 -3.9766 -4.1332 47 1 3.6612 -2.4903 0.0863 48 1 5.1058 -1.4499 0.1420 49 1 3.7099 -1.2204 2.2004 50 1 3.8191 0.3089 1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752672174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:26 Heat of formation + Delta-G solvation = -109.709253 kcal Electronic energy + Delta-G solvation = -28886.923050 eV Core-core repulsion = 24721.089009 eV Total energy + Delta-G solvation = -4165.834041 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90727 -39.70964 -38.56561 -37.95624 -34.66377 -34.22026 -33.80813 -33.24756 -32.23163 -31.20774 -28.39850 -27.03071 -25.85178 -25.55605 -24.30222 -23.27058 -22.71993 -21.43434 -20.39589 -19.59585 -19.14262 -17.90575 -17.57410 -16.77752 -16.57856 -16.28430 -16.04221 -15.53968 -15.27981 -15.19556 -14.84523 -14.64313 -14.52764 -14.21319 -14.17175 -13.77738 -13.43630 -13.37969 -13.05626 -12.76299 -12.56663 -12.44057 -12.37177 -12.06661 -11.96234 -11.82187 -11.61138 -11.59855 -11.40034 -11.23999 -11.06090 -10.92507 -10.65369 -10.56720 -10.40905 -10.27336 -10.23269 -9.80337 -9.52881 -9.28438 -8.47011 -8.10736 -7.98069 -6.43796 -3.84610 2.30728 2.78408 3.16586 3.25292 3.30984 3.31087 3.88587 4.09117 4.09566 4.16288 4.25536 4.34239 4.36427 4.41656 4.44562 4.66780 4.70583 4.80818 4.90984 4.93111 4.95955 4.97055 5.13710 5.17547 5.21711 5.24195 5.31031 5.37659 5.44247 5.49196 5.59551 5.60529 5.68260 5.73573 5.73972 5.82341 5.86747 5.87589 6.00557 6.05666 6.23248 6.40797 6.77896 7.17953 7.23911 7.53354 7.62712 7.92262 8.04375 8.59115 9.15897 9.52149 10.03556 10.73943 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.001606 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.716883 B =17429.284194 C =17931.442663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.059 0.941 4 C -0.129 4.129 5 C -0.111 4.111 6 H 0.099 0.901 7 C 0.521 3.479 8 O -0.535 6.535 9 N -0.711 5.711 10 C 0.117 3.883 11 H 0.105 0.895 12 C -0.135 4.135 13 C 0.060 3.940 14 H 0.068 0.932 15 N -0.655 5.655 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.147 4.147 29 C -0.148 4.148 30 C 0.064 3.936 31 O -0.380 6.380 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.399 0.601 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.351 0.649 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.801 -1.690 17.295 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.077 0.923 4 C -0.167 4.167 5 C -0.132 4.132 6 H 0.117 0.883 7 C 0.308 3.692 8 O -0.411 6.411 9 N -0.362 5.362 10 C 0.011 3.989 11 H 0.123 0.877 12 C -0.175 4.175 13 C -0.051 4.051 14 H 0.086 0.914 15 N -0.288 5.288 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.186 4.186 29 C -0.186 4.186 30 C -0.013 4.013 31 O -0.299 6.299 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.234 0.766 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.171 0.829 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.116 0.884 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.600 -2.477 15.867 28.546 hybrid contribution 1.865 0.853 0.665 2.156 sum -21.735 -1.624 16.532 27.356 Atomic orbital electron populations 1.21757 0.92739 1.03181 1.02544 1.22146 0.95425 0.94900 0.84733 0.92296 1.22062 0.92780 1.03256 0.98630 1.21408 0.97994 1.00365 0.93425 0.88312 1.20525 0.82132 0.80002 0.86584 1.90715 1.55691 1.49416 1.45303 1.45730 1.07061 1.56161 1.27246 1.21782 0.95484 0.94621 0.86971 0.87735 1.23543 0.94565 1.00211 0.99157 1.23094 0.91448 0.96657 0.93901 0.91403 1.60206 1.09493 1.05212 1.53854 1.21731 0.94130 0.94328 0.98064 1.19824 0.84900 0.85907 0.86829 1.90525 1.78239 1.26766 1.51217 1.41867 1.20480 1.15762 1.41920 1.19716 0.98684 1.02534 1.22033 0.87903 1.25266 0.99443 0.95008 0.98214 1.69609 1.36359 1.05723 1.42648 0.85850 0.80090 0.78591 0.79711 1.20372 1.20938 1.19415 1.23604 0.94706 0.98487 1.01810 1.22218 1.01472 1.01114 0.93770 1.22547 0.81183 0.99618 0.97960 1.87955 1.20780 1.78018 1.43131 0.91651 0.91763 0.90879 0.90051 0.90039 0.76616 0.88088 0.91595 0.82868 0.89700 0.93968 0.77491 0.91873 0.91111 0.87753 0.90258 0.90242 0.88375 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.15 0.36 -0.49 16 2 C 0.09 0.57 3.26 -26.69 -0.09 0.49 16 3 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 4 C -0.13 -0.98 4.02 -26.59 -0.11 -1.09 16 5 C -0.11 -0.76 2.61 -91.59 -0.24 -1.00 16 6 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 7 C 0.52 5.06 7.16 -10.98 -0.08 4.99 16 8 O -0.54 -7.38 15.58 5.55 0.09 -7.30 16 9 N -0.71 -5.80 5.17 -53.02 -0.27 -6.07 16 10 C 0.12 1.15 4.32 -67.12 -0.29 0.86 16 11 H 0.10 1.17 7.46 -51.93 -0.39 0.79 16 12 C -0.14 -1.53 7.68 -25.92 -0.20 -1.73 16 13 C 0.06 0.67 4.01 -66.90 -0.27 0.40 16 14 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 15 N -0.66 -10.10 6.19 -107.14 -0.66 -10.76 16 16 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16 17 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 18 O -0.58 -15.78 15.78 5.54 0.09 -15.69 16 19 N -0.56 -14.22 5.29 -10.96 -0.06 -14.27 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 24 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 C -0.15 -1.35 7.40 -25.92 -0.19 -1.55 16 29 C -0.15 -0.81 5.29 -26.59 -0.14 -0.95 16 30 C 0.06 0.35 6.84 37.21 0.25 0.60 16 31 O -0.38 -3.02 10.41 -35.23 -0.37 -3.39 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.75 8.03 -51.93 -0.42 0.34 16 37 H 0.40 2.30 8.19 -40.82 -0.33 1.97 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.35 5.55 8.25 -39.29 -0.32 5.23 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.29 7.67 -51.92 -0.40 -0.10 16 49 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -33.75 406.45 -9.15 -42.90 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -8.44 Total: 12.60 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.35 Total: 3.58 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.27 Total: -54.79 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.19 Total: -26.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.75 -9.15 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.805 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds