Wall clock time and date at job start Tue Mar 31 2020 22:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.48895 * 2 1 4 4 C 1.53095 * 109.47885 * 239.97430 * 2 1 3 5 5 C 1.53178 * 109.16080 * 182.40869 * 4 2 1 6 6 H 1.08994 * 109.54691 * 297.11219 * 5 4 2 7 7 C 1.50703 * 109.61805 * 176.88850 * 5 4 2 8 8 O 1.21287 * 119.99348 * 0.40608 * 7 5 4 9 9 N 1.34777 * 120.00330 * 180.39963 * 7 5 4 10 10 C 1.46491 * 120.00015 * 180.02562 * 9 7 5 11 11 H 1.09001 * 112.85072 * 336.19575 * 10 9 7 12 12 C 1.53782 * 113.61642 * 107.50353 * 10 9 7 13 13 C 1.53773 * 87.08309 * 89.11444 * 12 10 9 14 14 H 1.08999 * 113.61609 * 270.88418 * 13 12 10 15 15 N 1.46898 * 113.69199 * 139.98998 * 13 12 10 16 16 C 1.46899 * 110.99859 * 107.46513 * 15 13 12 17 17 C 1.50701 * 109.47189 * 179.97438 * 16 15 13 18 18 O 1.21296 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99892 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99643 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00394 * 0.02562 * 20 19 17 22 22 C 1.38960 * 119.99595 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99707 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47257 * 90.00291 * 24 22 20 26 26 H 1.48500 * 109.47438 * 210.00204 * 24 22 20 27 27 H 1.48507 * 109.47343 * 330.00558 * 24 22 20 28 28 C 1.53779 * 113.61661 * 204.99973 * 10 9 7 29 29 C 1.53176 * 109.03609 * 56.98198 * 5 4 2 30 30 C 1.53095 * 109.16286 * 303.01594 * 29 5 4 31 31 O 1.42903 * 109.41530 * 57.61206 * 30 29 5 32 32 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47569 * 300.02764 * 1 2 3 34 34 H 1.09009 * 109.47458 * 60.02557 * 1 2 3 35 35 H 1.08998 * 109.52174 * 62.50609 * 4 2 1 36 36 H 1.08997 * 109.57369 * 302.34399 * 4 2 1 37 37 H 0.97005 * 119.99506 * 0.02562 * 9 7 5 38 38 H 1.09006 * 113.61457 * 203.66374 * 12 10 9 39 39 H 1.08997 * 113.61133 * 334.56321 * 12 10 9 40 40 H 1.00904 * 111.00407 * 231.41971 * 15 13 12 41 41 H 1.09001 * 109.47403 * 300.00107 * 16 15 13 42 42 H 1.08997 * 109.47126 * 60.00350 * 16 15 13 43 43 H 0.96994 * 120.00333 * 359.97438 * 19 17 16 44 44 H 0.96995 * 119.99719 * 179.97438 * 23 22 20 45 45 H 1.09001 * 113.61099 * 25.43035 * 28 10 9 46 46 H 1.08995 * 113.62105 * 156.24609 * 28 10 9 47 47 H 1.09001 * 109.52789 * 62.92535 * 29 5 4 48 48 H 1.09007 * 109.52321 * 183.11250 * 29 5 4 49 49 H 1.08997 * 109.47843 * 177.59528 * 30 29 5 50 50 H 1.08997 * 109.48336 * 297.62823 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 1 3.9689 0.2435 -1.2408 7 6 4.0818 -1.5464 -2.3991 8 8 3.3002 -2.0094 -3.2028 9 7 5.4069 -1.7253 -2.5677 10 6 5.9034 -2.4787 -3.7218 11 1 5.1644 -3.1711 -4.1249 12 6 6.5729 -1.5984 -4.7904 13 6 7.8892 -1.8041 -4.0225 14 1 8.0627 -1.0591 -3.2459 15 7 9.0556 -2.0030 -4.8930 16 6 9.9247 -0.8187 -4.8873 17 6 11.1080 -1.0596 -5.7889 18 8 11.2163 -2.1139 -6.3787 19 7 12.0458 -0.1035 -5.9400 20 6 13.1220 -0.3225 -6.7607 21 1 13.2180 -1.2609 -7.2864 22 6 14.0886 0.6635 -6.9168 23 7 13.9715 1.8056 -6.2775 24 14 15.5553 0.3649 -8.0344 25 1 15.2286 0.8160 -9.4110 26 1 16.7260 1.1259 -7.5289 27 1 15.8772 -1.0847 -8.0519 28 6 7.2844 -3.1155 -3.4939 29 6 4.0175 -1.4601 0.0808 30 6 3.4306 -0.7094 1.2790 31 8 2.0065 -0.6742 1.1664 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5143 0.8897 34 1 -0.3634 0.5135 -0.8903 35 1 1.7148 -0.1842 -2.1399 36 1 1.6442 -1.7374 -1.2722 37 1 6.0319 -1.3552 -1.9247 38 1 6.5736 -2.0439 -5.7852 39 1 6.2226 -0.5663 -4.7879 40 1 9.5691 -2.8296 -4.6265 41 1 9.3644 0.0450 -5.2455 42 1 10.2744 -0.6295 -3.8724 43 1 11.9590 0.7398 -5.4687 44 1 14.6464 2.4937 -6.3862 45 1 7.5087 -3.3081 -2.4447 46 1 7.4791 -3.9766 -4.1332 47 1 3.6612 -2.4903 0.0863 48 1 5.1058 -1.4499 0.1420 49 1 3.7099 -1.2204 2.2004 50 1 3.8191 0.3089 1.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752672174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:25 Heat of formation + Delta-G solvation = -135.783217 kcal Electronic energy + Delta-G solvation = -28888.053702 eV Core-core repulsion = 24721.089009 eV Total energy + Delta-G solvation = -4166.964693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63197 -40.49917 -39.97311 -39.11385 -36.14192 -35.44837 -34.81484 -33.81572 -33.31799 -33.01739 -28.90422 -28.49493 -26.70695 -26.52538 -25.72598 -23.95736 -23.54569 -22.06543 -21.16707 -20.96003 -20.32046 -19.88976 -18.29200 -17.84765 -17.29184 -17.14508 -16.91486 -16.75114 -16.39473 -16.19840 -16.14906 -15.65041 -15.59837 -15.27040 -15.20880 -14.90868 -14.68335 -14.22642 -14.02129 -13.53709 -13.52642 -13.41007 -13.27688 -13.19223 -13.06597 -12.89613 -12.81503 -12.56405 -12.41857 -12.38492 -12.12088 -12.08740 -11.73662 -11.54580 -11.51050 -11.49723 -11.39833 -10.94598 -10.40610 -10.33263 -10.07058 -10.01866 -9.30331 -8.47235 -5.95900 1.37917 1.41987 1.54461 1.55950 2.05194 2.07993 2.29153 2.87292 2.96333 3.20328 3.47614 3.53472 3.55536 3.60719 3.66917 3.76863 3.94391 3.97623 4.12229 4.20430 4.21681 4.30206 4.45175 4.47159 4.47554 4.53236 4.58883 4.59432 4.71392 4.77754 4.83298 4.84428 4.86331 4.98839 5.00139 5.05749 5.08029 5.09929 5.13882 5.25806 5.32450 5.40665 5.56122 5.93280 6.16811 6.32898 6.43867 6.51799 6.59975 7.12367 7.22015 7.56104 8.11555 8.70074 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.001606 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.716883 B =17429.284194 C =17931.442663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.087 3.913 3 H 0.074 0.926 4 C -0.127 4.127 5 C -0.105 4.105 6 H 0.123 0.877 7 C 0.519 3.481 8 O -0.583 6.583 9 N -0.697 5.697 10 C 0.125 3.875 11 H 0.087 0.913 12 C -0.139 4.139 13 C 0.061 3.939 14 H 0.092 0.908 15 N -0.673 5.673 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 C -0.133 4.133 29 C -0.142 4.142 30 C 0.059 3.941 31 O -0.401 6.401 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.416 0.584 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.347 0.653 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.110 0.890 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.263 -0.479 19.109 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.092 0.908 4 C -0.166 4.166 5 C -0.126 4.126 6 H 0.141 0.859 7 C 0.307 3.693 8 O -0.462 6.462 9 N -0.348 5.348 10 C 0.018 3.982 11 H 0.105 0.895 12 C -0.179 4.179 13 C -0.048 4.048 14 H 0.110 0.890 15 N -0.305 5.305 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.171 4.171 29 C -0.180 4.180 30 C -0.018 4.018 31 O -0.321 6.321 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.167 0.833 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.080 0.920 48 H 0.123 0.877 49 H 0.128 0.872 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.057 -1.235 17.726 29.110 hybrid contribution 1.637 0.450 0.095 1.700 sum -21.420 -0.784 17.821 27.875 Atomic orbital electron populations 1.21786 0.92535 1.02730 1.03276 1.22188 0.95746 0.95260 0.83864 0.90799 1.22012 0.93627 1.01880 0.99032 1.21432 0.97250 1.01198 0.92702 0.85915 1.21072 0.82109 0.79416 0.86741 1.90701 1.56915 1.51445 1.47163 1.45596 1.06973 1.55441 1.26838 1.21566 0.95335 0.94159 0.87132 0.89514 1.23515 0.95297 1.00236 0.98806 1.23217 0.89310 0.98480 0.93808 0.89029 1.60167 1.10017 1.04388 1.55957 1.21582 0.91810 0.95461 0.97778 1.20956 0.85659 0.84629 0.86401 1.90494 1.79358 1.28364 1.52895 1.41934 1.20605 1.16430 1.42054 1.19675 1.00724 1.02357 1.23784 0.90386 1.26024 1.01452 0.94525 0.99167 1.69663 1.37203 1.06090 1.43072 0.84935 0.77134 0.78298 0.78012 1.19787 1.19446 1.19772 1.23500 0.93283 0.97280 1.03051 1.22208 1.02953 0.99930 0.92890 1.22742 0.79987 1.00740 0.98284 1.87934 1.22407 1.78355 1.43432 0.92718 0.91288 0.89878 0.90711 0.92473 0.74705 0.90014 0.91705 0.83260 0.88339 0.91087 0.76949 0.91284 0.88667 0.88370 0.91950 0.87719 0.87247 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.56 71.98 0.69 -0.93 16 2 C 0.09 1.06 3.26 30.62 0.10 1.16 16 3 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.13 -1.89 4.02 30.69 0.12 -1.77 16 5 C -0.10 -1.24 2.61 -11.42 -0.03 -1.27 16 6 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 7 C 0.52 9.51 7.16 87.66 0.63 10.14 16 8 O -0.58 -16.34 15.58 -3.05 -0.05 -16.39 16 9 N -0.70 -9.81 5.17 -440.04 -2.27 -12.09 16 10 C 0.12 2.28 4.32 45.52 0.20 2.47 16 11 H 0.09 1.96 7.46 -2.39 -0.02 1.94 16 12 C -0.14 -3.00 7.68 31.12 0.24 -2.76 16 13 C 0.06 1.23 4.01 45.44 0.18 1.41 16 14 H 0.09 1.46 7.87 -2.39 -0.02 1.44 16 15 N -0.67 -19.75 6.19 -492.87 -3.05 -22.80 16 16 C 0.07 2.15 6.01 85.56 0.51 2.66 16 17 C 0.44 20.42 7.82 87.66 0.69 21.10 16 18 O -0.62 -34.41 15.78 -3.08 -0.05 -34.45 16 19 N -0.57 -29.07 5.29 -306.97 -1.62 -30.69 16 20 C -0.34 -19.01 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -49.06 13.05 21.67 0.28 -48.78 16 24 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C -0.13 -2.14 7.40 31.12 0.23 -1.91 16 29 C -0.14 -1.21 5.29 30.69 0.16 -1.05 16 30 C 0.06 0.49 6.84 72.01 0.49 0.98 16 31 O -0.40 -5.83 10.41 -148.98 -1.55 -7.38 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.12 8.03 -2.39 -0.02 1.10 16 37 H 0.42 3.23 8.19 -92.70 -0.76 2.47 16 38 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.35 10.61 8.25 -89.69 -0.74 9.88 16 41 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.07 1.93 8.13 -2.39 -0.02 1.92 16 43 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 44 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 47 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.10 0.37 7.67 -2.38 -0.02 0.35 16 49 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -75.07 406.45 -2.06 -77.12 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -1.27 Total: 38.89 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.49 Total: 11.90 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -6.66 Total: -114.35 kcal Atomic # 8 Polarization: -56.58 SS G_CDS: -1.65 Total: -58.22 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -75.07 -2.06 -77.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.660 kcal (2) G-P(sol) polarization free energy of solvation -75.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds