Wall clock time and date at job start Tue Mar 31 2020 22:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.48260 * 2 1 4 4 C 1.53086 * 109.47985 * 120.02509 * 2 1 3 5 5 C 1.53182 * 109.15992 * 177.59430 * 4 2 1 6 6 H 1.09004 * 109.54257 * 183.06435 * 5 4 2 7 7 C 1.50701 * 109.54391 * 62.89029 * 5 4 2 8 8 O 1.21277 * 120.00099 * 0.17385 * 7 5 4 9 9 N 1.34778 * 119.99998 * 180.17762 * 7 5 4 10 10 C 1.46500 * 119.99919 * 180.02562 * 9 7 5 11 11 H 1.09002 * 112.85132 * 25.33083 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52821 * 10 9 7 13 13 C 1.53785 * 87.08277 * 89.19510 * 12 10 9 14 14 H 1.08995 * 113.61449 * 270.88726 * 13 12 10 15 15 N 1.46901 * 113.61190 * 139.98033 * 13 12 10 16 16 C 1.46903 * 110.99653 * 155.00141 * 15 13 12 17 17 C 1.50703 * 109.46773 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99983 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99740 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00100 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99972 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99950 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47104 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46886 * 119.99784 * 24 22 20 27 27 H 1.48499 * 109.47239 * 239.99466 * 24 22 20 28 28 C 1.53776 * 87.07661 * 25.43397 * 13 12 10 29 29 C 1.53180 * 109.11206 * 302.97635 * 5 4 2 30 30 C 1.53280 * 109.06022 * 56.94298 * 29 5 4 31 31 O 1.42902 * 109.48141 * 239.97361 * 2 1 3 32 32 H 1.08995 * 109.47065 * 299.96793 * 1 2 3 33 33 H 1.09002 * 109.46965 * 59.97450 * 1 2 3 34 34 H 1.08999 * 109.46479 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.52376 * 57.69404 * 4 2 1 36 36 H 1.08995 * 109.57938 * 297.53008 * 4 2 1 37 37 H 0.96998 * 120.00229 * 359.97438 * 9 7 5 38 38 H 1.08993 * 113.62030 * 203.74957 * 12 10 9 39 39 H 1.09006 * 113.61109 * 334.56882 * 12 10 9 40 40 H 1.00897 * 110.99872 * 278.95805 * 15 13 12 41 41 H 1.08992 * 109.47358 * 300.00306 * 16 15 13 42 42 H 1.08998 * 109.46626 * 60.00604 * 16 15 13 43 43 H 0.96999 * 119.99999 * 0.02562 * 19 17 16 44 44 H 0.96996 * 120.00054 * 180.02562 * 23 22 20 45 45 H 1.09003 * 113.61687 * 220.01420 * 28 13 12 46 46 H 1.09009 * 113.61565 * 89.11769 * 28 13 12 47 47 H 1.08997 * 109.52418 * 176.93068 * 29 5 4 48 48 H 1.08997 * 109.52097 * 297.11808 * 29 5 4 49 49 H 1.09000 * 109.45489 * 182.45570 * 30 29 5 50 50 H 1.08990 * 109.47022 * 62.44769 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7707 1.2121 6 1 3.9393 -1.3311 2.0715 7 6 4.1211 0.6318 1.2518 8 8 3.3649 1.5783 1.3079 9 7 5.4533 0.8343 1.2247 10 6 5.9879 2.1977 1.2638 11 1 5.3087 2.9052 1.7394 12 6 7.4303 2.2790 1.7910 13 6 7.8895 2.0857 0.3361 14 1 8.0120 1.0405 0.0521 15 7 9.0429 2.9175 -0.0323 16 6 9.7934 2.3148 -1.1421 17 6 10.9661 3.1945 -1.4916 18 8 11.1580 4.2220 -0.8765 19 7 11.8015 2.8394 -2.4878 20 6 12.8686 3.6393 -2.8055 21 1 13.0395 4.5543 -2.2578 22 6 13.7296 3.2735 -3.8329 23 7 13.5214 2.1605 -4.4997 24 14 15.1831 4.3639 -4.2662 25 1 15.1952 5.5506 -3.3736 26 1 16.4445 3.5998 -4.0916 27 1 15.0650 4.8083 -5.6782 28 6 6.5379 2.6846 -0.0872 29 6 4.0196 -1.4606 -0.0799 30 6 3.4308 -0.7091 -1.2790 31 8 2.0066 -0.6741 -1.1664 32 1 -0.3633 0.5133 0.8902 33 1 -0.3633 0.5142 -0.8898 34 1 -0.3632 -1.0277 -0.0005 35 1 1.6444 -1.7374 1.2709 36 1 1.7148 -0.1852 2.1404 37 1 6.0581 0.0773 1.1801 38 1 7.6897 3.2533 2.2050 39 1 7.7017 1.4535 2.4492 40 1 8.7534 3.8569 -0.2595 41 1 10.1534 1.3299 -0.8448 42 1 9.1418 2.2167 -2.0103 43 1 11.6478 2.0178 -2.9800 44 1 14.1226 1.9049 -5.2167 45 1 6.0892 2.1862 -0.9465 46 1 6.5532 3.7701 -0.1868 47 1 5.1079 -1.4504 -0.1395 48 1 3.6633 -2.4907 -0.0852 49 1 3.7100 -1.2202 -2.2004 50 1 3.8192 0.3091 -1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752672175.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:30 Heat of formation + Delta-G solvation = -105.771158 kcal Electronic energy + Delta-G solvation = -29594.079344 eV Core-core repulsion = 25428.416072 eV Total energy + Delta-G solvation = -4165.663273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17853 -39.66922 -38.35467 -37.87176 -34.73146 -34.20436 -33.81040 -33.10568 -32.14707 -31.20600 -28.27239 -26.99033 -25.84562 -25.34377 -24.31907 -23.34640 -22.75281 -21.89867 -20.08315 -19.81354 -19.12833 -17.90314 -17.21308 -16.64938 -16.61534 -16.23214 -16.11928 -15.56111 -15.40936 -15.01409 -14.66641 -14.64220 -14.47233 -14.20831 -14.04159 -13.75807 -13.27867 -13.01004 -12.86719 -12.77626 -12.74531 -12.56674 -12.37642 -12.27896 -12.17859 -11.84025 -11.62339 -11.48022 -11.44331 -11.15706 -11.09984 -10.92513 -10.76007 -10.52559 -10.35891 -10.24066 -10.12520 -9.56000 -9.54328 -9.32038 -8.48100 -8.05839 -7.97738 -6.44050 -3.84854 2.25488 2.77294 3.14808 3.25581 3.32900 3.48178 3.88105 4.07073 4.11075 4.22051 4.26337 4.31635 4.37722 4.52138 4.53443 4.65132 4.77422 4.85444 4.89856 5.05306 5.09727 5.13607 5.19824 5.24406 5.25143 5.35815 5.38712 5.43180 5.52135 5.53593 5.60175 5.63379 5.66072 5.71511 5.75384 5.81291 5.84735 5.90610 5.95904 5.97835 6.22276 6.34750 6.96859 7.14501 7.21498 7.53429 7.61661 7.88185 8.04296 8.58752 9.15773 9.51863 10.03126 10.73733 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.001842 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.195377 B =15200.960334 C =15933.839860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.084 0.916 4 C -0.127 4.127 5 C -0.113 4.113 6 H 0.102 0.898 7 C 0.518 3.482 8 O -0.534 6.534 9 N -0.710 5.710 10 C 0.118 3.882 11 H 0.103 0.897 12 C -0.132 4.132 13 C 0.069 3.931 14 H 0.093 0.907 15 N -0.657 5.657 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C -0.180 4.180 29 C -0.147 4.147 30 C 0.059 3.941 31 O -0.381 6.381 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.401 0.599 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.353 0.647 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.877 -10.943 10.247 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.135 4.135 6 H 0.121 0.879 7 C 0.305 3.695 8 O -0.411 6.411 9 N -0.361 5.361 10 C 0.012 3.988 11 H 0.121 0.879 12 C -0.171 4.171 13 C -0.043 4.043 14 H 0.111 0.889 15 N -0.288 5.288 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.220 4.220 29 C -0.185 4.185 30 C -0.018 4.018 31 O -0.300 6.300 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.235 0.765 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.173 0.827 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.115 0.885 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -22.870 -9.967 10.887 27.220 hybrid contribution 0.748 -0.266 -1.186 1.427 sum -22.123 -10.232 9.701 26.234 Atomic orbital electron populations 1.21735 0.93250 1.02471 1.02487 1.22377 0.95009 0.96881 0.84101 0.89832 1.22007 0.92619 1.01934 0.99980 1.21455 0.97860 0.93679 1.00473 0.87947 1.20632 0.82177 0.91355 0.75334 1.90664 1.57429 1.44006 1.48996 1.45749 1.06852 1.08558 1.74904 1.21777 0.95528 0.83860 0.97621 0.87936 1.23459 0.92596 1.03854 0.97178 1.23087 0.87796 0.97539 0.95839 0.88908 1.60016 1.22778 1.05565 1.40430 1.21712 0.95246 0.98659 0.92635 1.19830 0.85771 0.88253 0.83638 1.90524 1.75314 1.26992 1.53921 1.41874 1.24502 1.23277 1.30391 1.19759 1.02516 1.05075 1.15508 0.87849 1.25270 0.99450 0.96933 0.96343 1.69618 1.38941 1.22857 1.22908 0.85796 0.80424 0.79810 0.78295 1.19203 1.20726 1.20767 1.24193 0.98189 1.01952 0.97712 1.22244 1.01479 1.00862 0.93932 1.22574 0.81565 0.99569 0.98052 1.87915 1.20418 1.78173 1.43519 0.91088 0.91933 0.92166 0.90476 0.90119 0.76457 0.88040 0.90894 0.82654 0.89689 0.93864 0.77484 0.91916 0.91351 0.88793 0.90260 0.89625 0.88461 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.56 37.16 0.36 -0.75 16 2 C 0.07 0.69 2.97 -26.69 -0.08 0.61 16 3 H 0.08 0.98 5.81 -51.93 -0.30 0.68 16 4 C -0.13 -0.96 4.56 -26.59 -0.12 -1.08 16 5 C -0.11 -0.76 3.04 -91.58 -0.28 -1.04 16 6 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 7 C 0.52 4.77 5.82 -10.98 -0.06 4.70 16 8 O -0.53 -6.79 13.47 5.56 0.07 -6.72 16 9 N -0.71 -5.50 5.15 -53.02 -0.27 -5.77 16 10 C 0.12 1.09 4.30 -67.12 -0.29 0.80 16 11 H 0.10 1.09 7.50 -51.93 -0.39 0.70 16 12 C -0.13 -1.25 7.62 -25.92 -0.20 -1.45 16 13 C 0.07 0.75 4.07 -66.90 -0.27 0.48 16 14 H 0.09 0.91 7.87 -51.93 -0.41 0.50 16 15 N -0.66 -10.01 6.24 -107.13 -0.67 -10.68 16 16 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 17 C 0.44 10.24 7.82 -10.98 -0.09 10.16 16 18 O -0.58 -15.73 15.78 5.55 0.09 -15.64 16 19 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 20 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 24 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 C -0.18 -1.83 7.50 -25.92 -0.19 -2.02 16 29 C -0.15 -0.88 5.58 -26.49 -0.15 -1.02 16 30 C 0.06 0.49 6.62 37.30 0.25 0.74 16 31 O -0.38 -3.93 10.41 -35.23 -0.37 -4.30 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.63 8.02 -51.93 -0.42 0.21 16 37 H 0.40 2.22 8.11 -40.82 -0.33 1.89 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.35 5.64 7.89 -39.29 -0.31 5.33 16 41 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.99 7.82 -51.92 -0.41 0.58 16 47 H 0.08 0.35 7.51 -51.93 -0.39 -0.04 16 48 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.05 0.47 7.38 -51.93 -0.38 0.08 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -33.26 399.87 -9.12 -42.38 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -8.24 Total: 13.67 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.40 Total: 2.97 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.28 Total: -54.32 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.20 Total: -26.66 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.26 -9.12 -42.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672175.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.394 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds