Wall clock time and date at job start Tue Mar 31 2020 22:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.48260 * 2 1 4 4 C 1.53086 * 109.47985 * 120.02509 * 2 1 3 5 5 C 1.53182 * 109.15992 * 177.59430 * 4 2 1 6 6 H 1.09004 * 109.54257 * 183.06435 * 5 4 2 7 7 C 1.50701 * 109.54391 * 62.89029 * 5 4 2 8 8 O 1.21277 * 120.00099 * 0.17385 * 7 5 4 9 9 N 1.34778 * 119.99998 * 180.17762 * 7 5 4 10 10 C 1.46500 * 119.99919 * 180.02562 * 9 7 5 11 11 H 1.09002 * 112.85132 * 25.33083 * 10 9 7 12 12 C 1.53781 * 113.61711 * 156.52821 * 10 9 7 13 13 C 1.53785 * 87.08277 * 89.19510 * 12 10 9 14 14 H 1.08995 * 113.61449 * 270.88726 * 13 12 10 15 15 N 1.46901 * 113.61190 * 139.98033 * 13 12 10 16 16 C 1.46903 * 110.99653 * 155.00141 * 15 13 12 17 17 C 1.50703 * 109.46773 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99983 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99740 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99978 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00100 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99972 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00292 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99950 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47104 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46886 * 119.99784 * 24 22 20 27 27 H 1.48499 * 109.47239 * 239.99466 * 24 22 20 28 28 C 1.53776 * 87.07661 * 25.43397 * 13 12 10 29 29 C 1.53180 * 109.11206 * 302.97635 * 5 4 2 30 30 C 1.53280 * 109.06022 * 56.94298 * 29 5 4 31 31 O 1.42902 * 109.48141 * 239.97361 * 2 1 3 32 32 H 1.08995 * 109.47065 * 299.96793 * 1 2 3 33 33 H 1.09002 * 109.46965 * 59.97450 * 1 2 3 34 34 H 1.08999 * 109.46479 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.52376 * 57.69404 * 4 2 1 36 36 H 1.08995 * 109.57938 * 297.53008 * 4 2 1 37 37 H 0.96998 * 120.00229 * 359.97438 * 9 7 5 38 38 H 1.08993 * 113.62030 * 203.74957 * 12 10 9 39 39 H 1.09006 * 113.61109 * 334.56882 * 12 10 9 40 40 H 1.00897 * 110.99872 * 278.95805 * 15 13 12 41 41 H 1.08992 * 109.47358 * 300.00306 * 16 15 13 42 42 H 1.08998 * 109.46626 * 60.00604 * 16 15 13 43 43 H 0.96999 * 119.99999 * 0.02562 * 19 17 16 44 44 H 0.96996 * 120.00054 * 180.02562 * 23 22 20 45 45 H 1.09003 * 113.61687 * 220.01420 * 28 13 12 46 46 H 1.09009 * 113.61565 * 89.11769 * 28 13 12 47 47 H 1.08997 * 109.52418 * 176.93068 * 29 5 4 48 48 H 1.08997 * 109.52097 * 297.11808 * 29 5 4 49 49 H 1.09000 * 109.45489 * 182.45570 * 30 29 5 50 50 H 1.08990 * 109.47022 * 62.44769 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 3.5711 -0.7707 1.2121 6 1 3.9393 -1.3311 2.0715 7 6 4.1211 0.6318 1.2518 8 8 3.3649 1.5783 1.3079 9 7 5.4533 0.8343 1.2247 10 6 5.9879 2.1977 1.2638 11 1 5.3087 2.9052 1.7394 12 6 7.4303 2.2790 1.7910 13 6 7.8895 2.0857 0.3361 14 1 8.0120 1.0405 0.0521 15 7 9.0429 2.9175 -0.0323 16 6 9.7934 2.3148 -1.1421 17 6 10.9661 3.1945 -1.4916 18 8 11.1580 4.2220 -0.8765 19 7 11.8015 2.8394 -2.4878 20 6 12.8686 3.6393 -2.8055 21 1 13.0395 4.5543 -2.2578 22 6 13.7296 3.2735 -3.8329 23 7 13.5214 2.1605 -4.4997 24 14 15.1831 4.3639 -4.2662 25 1 15.1952 5.5506 -3.3736 26 1 16.4445 3.5998 -4.0916 27 1 15.0650 4.8083 -5.6782 28 6 6.5379 2.6846 -0.0872 29 6 4.0196 -1.4606 -0.0799 30 6 3.4308 -0.7091 -1.2790 31 8 2.0066 -0.6741 -1.1664 32 1 -0.3633 0.5133 0.8902 33 1 -0.3633 0.5142 -0.8898 34 1 -0.3632 -1.0277 -0.0005 35 1 1.6444 -1.7374 1.2709 36 1 1.7148 -0.1852 2.1404 37 1 6.0581 0.0773 1.1801 38 1 7.6897 3.2533 2.2050 39 1 7.7017 1.4535 2.4492 40 1 8.7534 3.8569 -0.2595 41 1 10.1534 1.3299 -0.8448 42 1 9.1418 2.2167 -2.0103 43 1 11.6478 2.0178 -2.9800 44 1 14.1226 1.9049 -5.2167 45 1 6.0892 2.1862 -0.9465 46 1 6.5532 3.7701 -0.1868 47 1 5.1079 -1.4504 -0.1395 48 1 3.6633 -2.4907 -0.0852 49 1 3.7100 -1.2202 -2.2004 50 1 3.8192 0.3091 -1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752672175.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:29 Heat of formation + Delta-G solvation = -131.498021 kcal Electronic energy + Delta-G solvation = -29595.194945 eV Core-core repulsion = 25428.416072 eV Total energy + Delta-G solvation = -4166.778873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87695 -40.57033 -39.91908 -38.84879 -36.13912 -35.47682 -34.81665 -33.84094 -33.29496 -32.92900 -28.87133 -28.47289 -26.65948 -26.42526 -25.62805 -24.16320 -23.56737 -22.60419 -21.22415 -20.71799 -20.43152 -19.87592 -18.00994 -17.67803 -17.28905 -17.25549 -16.92922 -16.84029 -16.38731 -16.20652 -16.11755 -15.67703 -15.66657 -15.31480 -15.01996 -14.83111 -14.36494 -14.27995 -13.77752 -13.53684 -13.49659 -13.47060 -13.37010 -13.28034 -13.11291 -12.94715 -12.85640 -12.81586 -12.57717 -12.40621 -12.12008 -12.05386 -11.79376 -11.70905 -11.52091 -11.46932 -11.37169 -10.80907 -10.33719 -10.24591 -10.06717 -10.01736 -9.24325 -8.47469 -5.96004 1.36191 1.41762 1.55754 1.56909 2.05011 2.11148 2.28898 2.84818 2.94782 3.19922 3.43409 3.53375 3.60601 3.68972 3.70736 3.80704 3.95711 3.96577 4.06148 4.10883 4.26679 4.32138 4.41399 4.50949 4.52128 4.56509 4.60415 4.67185 4.71599 4.79273 4.80188 4.83217 4.85523 4.95832 4.96141 5.02583 5.05145 5.08795 5.12548 5.23519 5.29984 5.40878 5.56615 5.93268 6.16234 6.30316 6.38841 6.53160 6.59870 7.12422 7.23513 7.56102 8.11542 8.70048 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021415 B = 0.001842 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.195377 B =15200.960334 C =15933.839860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.054 0.946 4 C -0.126 4.126 5 C -0.109 4.109 6 H 0.132 0.868 7 C 0.515 3.485 8 O -0.575 6.575 9 N -0.698 5.698 10 C 0.127 3.873 11 H 0.087 0.913 12 C -0.122 4.122 13 C 0.070 3.930 14 H 0.114 0.886 15 N -0.671 5.671 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.177 4.177 29 C -0.140 4.140 30 C 0.051 3.949 31 O -0.399 6.399 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.415 0.585 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.345 0.655 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.100 0.900 49 H 0.108 0.892 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.797 -13.274 10.629 28.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.163 4.163 5 C -0.130 4.130 6 H 0.150 0.850 7 C 0.303 3.697 8 O -0.455 6.455 9 N -0.350 5.350 10 C 0.021 3.979 11 H 0.105 0.895 12 C -0.161 4.161 13 C -0.041 4.041 14 H 0.132 0.868 15 N -0.302 5.302 16 C -0.067 4.067 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.218 4.218 29 C -0.177 4.177 30 C -0.026 4.026 31 O -0.319 6.319 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.253 0.747 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.164 0.836 41 H 0.126 0.874 42 H 0.083 0.917 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.126 0.874 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -22.789 -12.354 11.266 28.265 hybrid contribution 0.663 0.492 -1.300 1.540 sum -22.126 -11.863 9.966 27.011 Atomic orbital electron populations 1.21744 0.92409 1.03089 1.02553 1.22373 0.95819 0.95629 0.84954 0.92797 1.21986 0.93437 1.02375 0.98546 1.21518 0.97130 0.92205 1.02157 0.84980 1.21155 0.82158 0.92061 0.74344 1.90660 1.58444 1.45522 1.50835 1.45630 1.06793 1.08356 1.74186 1.21554 0.95126 0.84507 0.96762 0.89525 1.23367 0.92142 1.04063 0.96548 1.23252 0.86248 0.97868 0.96693 0.86795 1.60056 1.24719 1.05791 1.39650 1.21586 0.93057 0.97833 0.94201 1.20978 0.86473 0.88198 0.82035 1.90493 1.76555 1.29107 1.54996 1.41941 1.24580 1.23308 1.31222 1.19695 1.04593 1.05331 1.16720 0.90415 1.26028 1.01448 0.98153 0.95655 1.69670 1.39765 1.23594 1.23020 0.84880 0.77471 0.77920 0.78122 1.19886 1.19533 1.19641 1.24134 0.97952 1.01507 0.98170 1.22239 1.02609 1.00900 0.91993 1.22734 0.80777 0.99062 0.99980 1.87887 1.21700 1.78127 1.44148 0.90246 0.92715 0.91173 0.88807 0.90616 0.74725 0.89029 0.89156 0.83551 0.87400 0.91738 0.76923 0.91290 0.91476 0.89668 0.88173 0.88131 0.87400 0.95246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.56 71.98 0.69 -1.47 16 2 C 0.07 1.30 2.97 30.62 0.09 1.39 16 3 H 0.05 1.33 5.81 -2.39 -0.01 1.32 16 4 C -0.13 -1.70 4.56 30.68 0.14 -1.56 16 5 C -0.11 -1.19 3.04 -11.42 -0.03 -1.23 16 6 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 7 C 0.51 8.79 5.82 87.66 0.51 9.30 16 8 O -0.58 -14.78 13.47 -3.02 -0.04 -14.82 16 9 N -0.70 -9.34 5.15 -440.04 -2.27 -11.60 16 10 C 0.13 2.21 4.30 45.52 0.20 2.40 16 11 H 0.09 1.85 7.50 -2.39 -0.02 1.83 16 12 C -0.12 -2.09 7.62 31.12 0.24 -1.85 16 13 C 0.07 1.37 4.07 45.44 0.18 1.55 16 14 H 0.11 1.80 7.87 -2.39 -0.02 1.78 16 15 N -0.67 -19.66 6.24 -492.86 -3.08 -22.73 16 16 C 0.07 2.11 6.01 85.56 0.51 2.63 16 17 C 0.44 20.37 7.82 87.66 0.69 21.06 16 18 O -0.62 -34.46 15.78 -3.05 -0.05 -34.51 16 19 N -0.57 -29.05 5.29 -306.99 -1.62 -30.67 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 24 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 C -0.18 -3.43 7.50 31.12 0.23 -3.20 16 29 C -0.14 -1.24 5.58 30.75 0.17 -1.07 16 30 C 0.05 0.78 6.62 72.08 0.48 1.26 16 31 O -0.40 -8.03 10.41 -148.98 -1.55 -9.58 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.10 8.02 -2.39 -0.02 1.08 16 37 H 0.42 3.14 8.11 -92.71 -0.75 2.39 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.34 11.01 7.89 -89.70 -0.71 10.30 16 41 H 0.11 3.03 8.13 -2.39 -0.02 3.01 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 44 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.81 7.82 -2.38 -0.02 1.79 16 47 H 0.10 0.49 7.51 -2.39 -0.02 0.47 16 48 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.03 0.55 7.38 -2.39 -0.02 0.54 16 Total: -1.00 -74.05 399.87 -2.14 -76.19 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -1.22 Total: 40.87 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 5.37 Total: 10.90 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -6.68 Total: -113.83 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -1.64 Total: -58.91 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -74.05 -2.14 -76.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752672175.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.310 kcal (2) G-P(sol) polarization free energy of solvation -74.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds